feat: add selective k-mer filtering to dump and rebuild commands

Add the `obidebruinj` dependency and introduce `FilterArgs` CLI arguments for ingroup/outgroup predicates and count/fraction thresholds. Extend `GroupFilterParams` to support outgroup filtering, and integrate the filter collection into `KmerIndex::dump` and `rebuild` commands. This enables selective k-mer filtering during index operations and CSV exports.
2026-06-04 20:54:31 +02:00
parent a1499e6153
commit 3e62ffe010
6 changed files with 112 additions and 92 deletions
@@ -1525,6 +1525,7 @@ dependencies = [
 "csv",
 "indicatif",
 "kodama",
+ "obidebruinj",
 "obifastwrite",
 "obikindex",
 "obikpartitionner",