refactor: update CI toolchain setup and optimize parallel indexing

Update CI workflows to explicitly install the Rust toolchain via rustup and configure musl targets for deterministic static builds in Docker containers. Bump obikmer dependency to 0.1.3. Refactor obicompactvec to reduce peak memory usage by computing column sizes from filesystem metadata, add atomic writes, and implement cleanup guards. Replace parallel iteration patterns in obikindex with a structured PartitionRunner pipeline for simplified error handling and progress tracking.
2026-06-22 10:40:50 +02:00
parent 9578f991f4 a522c0907e
commit 4e625afaba
83 changed files with 5959 additions and 1010 deletions
@@ -0,0 +1,36 @@
+name: CI
+
+on:
+  push:
+    branches: ['**']
+  pull_request:
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        working-directory: src
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Install Rust
+        run: |
+          curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y --default-toolchain stable
+          echo "$HOME/.cargo/bin" >> $GITHUB_PATH
+
+      - name: Cache cargo registry
+        uses: actions/cache@v4
+        with:
+          path: |
+            ~/.cargo/registry
+            ~/.cargo/git
+            src/target
+          key: ${{ runner.os }}-cargo-${{ hashFiles('src/Cargo.lock') }}
+          restore-keys: ${{ runner.os }}-cargo-
+
+      - name: Build
+        run: cargo build --release
+
+      - name: Test
+        run: cargo test --release
@@ -0,0 +1,48 @@
+name: Release
+
+on:
+  push:
+    tags:
+      - 'v*'
+
+jobs:
+  build-linux-static:
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        working-directory: src
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Install Rust + musl target
+        run: |
+          curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y --default-toolchain stable
+          echo "$HOME/.cargo/bin" >> $GITHUB_PATH
+          sudo apt-get update -qq && sudo apt-get install -y -qq musl-tools
+          $HOME/.cargo/bin/rustup target add x86_64-unknown-linux-musl
+
+      - name: Cache cargo registry
+        uses: actions/cache@v4
+        with:
+          path: |
+            ~/.cargo/registry
+            ~/.cargo/git
+            src/target
+          key: linux-musl-cargo-${{ hashFiles('src/Cargo.lock') }}
+          restore-keys: linux-musl-cargo-
+
+      - name: Build static binary
+        run: cargo build --release --target x86_64-unknown-linux-musl
+
+      - name: Prepare artifact
+        run: |
+          mkdir -p /tmp/dist
+          cp target/x86_64-unknown-linux-musl/release/obikmer /tmp/dist/obikmer-linux-x86_64
+          strip /tmp/dist/obikmer-linux-x86_64
+
+      - name: Upload release asset
+        uses: actions/upload-artifact@v4
+        with:
+          name: obikmer-linux-x86_64
+          path: /tmp/dist/obikmer-linux-x86_64
+          if-no-files-found: error