feat: integrate obikseq to configure global k-mer and minimizer sizes

This change adds the `obikseq` crate as a local dependency and inserts `set_k` and `set_m` calls across index creation and command modules. By synchronizing the runtime's global k-mer and minimizer dimensions with the loaded index parameters, downstream sequence processing and partitioning operations now consistently use the correct structural constraints.
2026-06-03 11:55:11 +02:00
parent 173ac9fb42
commit bfe0cb4b82
10 changed files with 9 additions and 20 deletions
@@ -1507,6 +1507,7 @@ dependencies = [
 "ndarray",
 "obicompactvec",
 "obikpartitionner",
+ "obikseq",
 "obilayeredmap",
 "obiskio",
 "obisys",