feat: add benchmark pipeline, expose APIs, and enforce strict paths

Introduces a Make-based orchestration for simulating, indexing, merging, filtering, and verifying k-mer counts and presence. Exposes internal builder and iterator APIs publicly, enforces mandatory leading slashes for predicate patterns, registers the `obitaxonomy` crate, and updates tooling configurations alongside documentation.

This commit is contained in:

Eric Coissac

2026-06-19 09:55:41 +02:00

parent 280ca1f5a3

commit c694e1f2b0

42 changed files with 2585 additions and 84 deletions

.serena/.gitignore

View File

@@ -0,0 +1,2 @@
 /cache
 /project.local.yml