chore: bump version to 1.1.21 and update obikindex features

Disables default features for the `obikindex` dependency and introduces a `[features]` block. The new `numa` feature is set as the default, conditionally enabling NUMA support in `obikindex`.

.gitea/workflows/ci.yml

@@ -1,9 +1,8 @@
 name: CI
 
 on:
-  push:
-    branches: ['main']
   pull_request:
+    branches: ['main']
 
 jobs:
   build:

.gitea/workflows/release.yml

@@ -11,6 +11,10 @@ jobs:
     outputs:
       release_id: ${{ steps.create.outputs.release_id }}
     steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
       - name: Create Gitea release
         id: create
         env:
@@ -18,11 +22,12 @@ jobs:
           TAG: ${{ github.ref_name }}
         run: |
           sudo apt-get update -qq && sudo apt-get install -y -qq jq
+          body=$(git for-each-ref --format='%(contents)' "refs/tags/$TAG")
           release_id=$(curl -s -X POST \
             "${{ github.server_url }}/api/v1/repos/${{ github.repository }}/releases" \
             -H "Authorization: token $GITEA_TOKEN" \
             -H "Content-Type: application/json" \
-            -d "{\"tag_name\":\"$TAG\",\"name\":\"$TAG\"}" | jq -r '.id')
+            -d "{\"tag_name\":\"$TAG\",\"name\":\"$TAG\",\"body\":$(echo "$body" | jq -Rs .)}" | jq -r '.id')
           echo "release_id=$release_id" >> $GITHUB_OUTPUT
 
   build-linux-x86_64:

Makefile

@@ -90,5 +90,9 @@ release: bump-version
 	@jj git push --change @
 	@new_version=$$(grep '^version = ' $(CARGO_TOML) | head -n 1 | sed 's/version = "\(.*\)"/\1/'); \
 	git_hash=$$(jj log -r @ --no-graph -T 'commit_id'); \
-	git tag "v$$new_version" "$$git_hash" && \
+	commits=$$(jj log -r 'latest(tags())..@' --no-graph -T 'description ++ "\n"' 2>/dev/null || \
+	           jj log --no-graph -T 'description ++ "\n"' --limit 30); \
+	notes=$$(printf 'Write concise markdown release notes for obikmer (a Rust kmer genomics tool). Be technical and direct. Base them strictly on these commit messages:\n\n%s' "$$commits" | aichat 2>/dev/null); \
+	tag_msg="$${notes:-Release v$$new_version}"; \
+	git tag -a "v$$new_version" -m "$$tag_msg" "$$git_hash" && \
 	git push origin "v$$new_version"

src/Cargo.lock

@@ -1704,7 +1704,7 @@ dependencies = [
 
 [[package]]
 name = "obikmer"
-version = "1.1.16"
+version = "1.1.21"
 dependencies = [
  "clap",
  "csv",

src/obikmer/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "obikmer"
-version = "1.1.16"
+version = "1.1.21"
 edition = "2024"
 
 [[bin]]
@@ -18,7 +18,7 @@ obikrope      = { path = "../obikrope" }
 obikpartitionner = { path = "../obikpartitionner" }
 obisys        = { path = "../obisys" }
 obiskio       = { path = "../obiskio" }
-obikindex     = { path = "../obikindex" }
+obikindex     = { path = "../obikindex", default-features = false }
 obitaxonomy   = { path = "../obitaxonomy" }
 obilayeredmap = { path = "../obilayeredmap" }
 clap          = { version = "4", features = ["derive"] }
@@ -33,4 +33,6 @@ tracing-subscriber = { version = "0.3", features = ["fmt", "env-filter"] }
 pprof = { version = "0.13", features = ["prost-codec"], optional = true }
 
 [features]
+default   = ["numa"]
+numa      = ["obikindex/numa"]
 profiling = ["dep:pprof"]