ci: update release workflow and bump obikmer to 1.1.26

Replaces the macOS ARM64 cross-compilation container with a custom internal registry image. Adds explicit steps to install the `aarch64-apple-darwin` Rust target and `jq`, and updates the build command to use `--no-default-features`. Bumps the `obikmer` package version from 1.1.25 to 1.1.26.
Merge pull request 'ci: update macOS ARM64 build workflow and bump obikmer version' (#49 ) from push-lllnsqlrqrut into main
2026-06-24 15:55:02 +02:00 · 2026-06-23 13:15:20 +00:00 · 2026-06-23 15:01:17 +02:00 · 2026-06-23 09:51:33 +00:00 · 2026-06-23 11:47:54 +02:00 · 2026-06-23 11:46:09 +02:00
3 changed files with 7 additions and 13 deletions
@@ -86,21 +86,13 @@ jobs:
  build-macos-arm64:
    needs: create-release
    runs-on: ubuntu-latest
+    container: registry.metabarcoding.org/cibuilder/rustcrossosx:latest
    defaults:
      run:
        working-directory: src
    steps:
      - uses: actions/checkout@v4

-      - name: Install Rust + zigbuild
-        run: |
-          curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y --default-toolchain stable
-          echo "$HOME/.cargo/bin" >> $GITHUB_PATH
-          sudo apt-get update -qq && sudo apt-get install -y -qq jq
-          pip install ziglang --quiet --break-system-packages
-          $HOME/.cargo/bin/cargo install cargo-zigbuild
-          $HOME/.cargo/bin/rustup target add aarch64-apple-darwin
-
      - name: Cache cargo registry
        uses: actions/cache@v4
        with:
@@ -112,7 +104,7 @@ jobs:
          restore-keys: macos-arm64-cargo-

      - name: Build macOS binary
-        run: cargo zigbuild --release --target aarch64-apple-darwin --no-default-features
+        run: cargo build --release --target aarch64-apple-darwin --no-default-features

      - name: Prepare and upload artifact
        env:
@@ -1704,7 +1704,7 @@ dependencies = [

 [[package]]
 name = "obikmer"
-version = "1.1.20"
+version = "1.1.26"
 dependencies = [
 "clap",
 "csv",
@@ -1,6 +1,6 @@
 [package]
 name = "obikmer"
-version = "1.1.20"
+version = "1.1.26"
 edition = "2024"

 [[bin]]
@@ -18,7 +18,7 @@ obikrope      = { path = "../obikrope" }
 obikpartitionner = { path = "../obikpartitionner" }
 obisys        = { path = "../obisys" }
 obiskio       = { path = "../obiskio" }
-obikindex     = { path = "../obikindex" }
+obikindex     = { path = "../obikindex", default-features = false }
 obitaxonomy   = { path = "../obitaxonomy" }
 obilayeredmap = { path = "../obilayeredmap" }
 clap          = { version = "4", features = ["derive"] }
@@ -33,4 +33,6 @@ tracing-subscriber = { version = "0.3", features = ["fmt", "env-filter"] }
 pprof = { version = "0.13", features = ["prost-codec"], optional = true }

 [features]
+default   = ["numa"]
+numa      = ["obikindex/numa"]
 profiling = ["dep:pprof"]
Author	SHA1	Message	Date
Eric Coissac	b9b2e42ad2	ci: update release workflow and bump obikmer to 1.1.26 Release / create-release (push) Successful in 2m32s Details CI / build (pull_request) Successful in 3m47s Details Release / build-linux-x86_64 (push) Successful in 8m18s Details Release / build-macos-arm64 (push) Failing after 0s Details Replaces the macOS ARM64 cross-compilation container with a custom internal registry image. Adds explicit steps to install the `aarch64-apple-darwin` Rust target and `jq`, and updates the build command to use `--no-default-features`. Bumps the `obikmer` package version from 1.1.25 to 1.1.26.	2026-06-24 15:55:02 +02:00
coissac	ca42fdff2f	Merge pull request 'ci: update macOS ARM64 build workflow and bump obikmer version' (#49 ) from push-lllnsqlrqrut into main Reviewed-on: #49	2026-06-23 13:15:20 +00:00
Eric Coissac	136cd89efb	ci: update macOS ARM64 build workflow and bump obikmer version Release / create-release (push) Successful in 2m27s Details Release / build-linux-x86_64 (push) Successful in 7m52s Details Release / build-macos-arm64 (push) Failing after 8m53s Details CI / build (pull_request) Successful in 5m31s Details Replace manual Zig/cargo-zigbuild setup with a pre-configured Docker container (`joseluisq/rust-linux-darwin-builder`). Use explicit Clang cross-compilers for native macOS ARM64 compilation. Bump the `obikmer` package version to 1.1.25.	2026-06-23 15:01:17 +02:00
coissac	a4bbf607b7	Merge pull request 'Push kxsopnzprltv' (#48 ) from push-kxsopnzprltv into main Reviewed-on: #48	2026-06-23 09:51:33 +00:00
Eric Coissac	9927100a1c	chore: update obikmer to 1.1.24 Release / create-release (push) Successful in 2m24s Details Release / build-linux-x86_64 (push) Successful in 7m49s Details Release / build-macos-arm64 (push) Failing after 3m31s Details CI / build (pull_request) Successful in 3m22s Details Bumps the obikmer version in Cargo.toml from 1.1.21 to 1.1.24 and updates Cargo.lock to align with the upstream patch release (1.1.23). This ensures consistent dependency resolution across builds.	2026-06-23 11:47:54 +02:00
Eric Coissac	527258f822	ci: enforce macOS 11.0 deployment target for ARM builds Adds MACOSX_DEPLOYMENT_TARGET=11.0 environment variable and updates the cargo zigbuild target to aarch64-apple-darwin11.0 to explicitly require macOS 11.0 for ARM binary compilation.	2026-06-23 11:46:09 +02:00
coissac	ef62f1947e	Merge pull request 'chore: bump version to 1.1.21 and update obikindex features' (#47 ) from push-xwutoxpnxorz into main Reviewed-on: #47	2026-06-23 08:31:31 +00:00
Eric Coissac	d02316dcf6	chore: bump version to 1.1.21 and update obikindex features Release / create-release (push) Successful in 2m29s Details CI / build (pull_request) Successful in 4m36s Details Release / build-linux-x86_64 (push) Successful in 10m25s Details Release / build-macos-arm64 (push) Failing after 4m50s Details Disables default features for the `obikindex` dependency and introduces a `[features]` block. The new `numa` feature is set as the default, conditionally enabling NUMA support in `obikindex`.	2026-06-23 10:30:39 +02:00
coissac	c323b3eaef	Merge pull request 'Bump obikmer to 1.1.20 and update release workflow' (#46 ) from push-wpnywwlwxrps into main Reviewed-on: #46	2026-06-23 08:03:58 +00:00