Eric Coissac
469e53b6f5
Introduces scripts to compute and validate pairwise genomic distance matrices across multiple metrics. Updates the Makefile with build and comparison targets, adds .gitignore rules for generated outputs, and includes test CSV matrices and a Newick phylogenetic tree for validating the distance computation pipeline.
24 lines
438 B
Plaintext
24 lines
438 B
Plaintext
.venv/
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src/target
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data-stress
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*.fasta
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*.fasta.gz
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*.zst
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*.zst.meta
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*.pb
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./**/*.json
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*.bin
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Betula_exilis--IGA-24-33
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benchmark/genomes
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benchmark/simulated_data
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benchmark/specimen_index_presence
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benchmark/specimen_index_count
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benchmark/global_index_presence
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benchmark/global_index_count
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benchmark/stats
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benchmark/reference_index
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benchmark/reference_dist
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benchmark/obikmer_dist
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benchmark/specific_index_count
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benchmark/specific_index_presence
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