From 0066211385359abc084d49dd922cce60bafbb3a1 Mon Sep 17 00:00:00 2001 From: alain viari Date: Sun, 8 Nov 2015 20:43:18 +0100 Subject: [PATCH] fixed bug : CDS product not quoted Former-commit-id: 412798e7efc6648f611fa205e893f097c1c3f583 Former-commit-id: daaa9808ca1990dda6cd137bb2ac3aaf1fb55600 --- detectors/cds/lib/toEmbl.awk | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/detectors/cds/lib/toEmbl.awk b/detectors/cds/lib/toEmbl.awk index bf3f206..e6df42d 100644 --- a/detectors/cds/lib/toEmbl.awk +++ b/detectors/cds/lib/toEmbl.awk @@ -63,6 +63,7 @@ function SQualifier(qual, val, _local_, s) { } function QQualifier(qual, val) { + gsub("\"", "''", val) SQualifier(qual, "\"" val "\"") } @@ -124,7 +125,7 @@ function QQualifier(qual, val) { SQualifier("transl_table", 11) QQualifier("gene", gname) QQualifier("locus_tag", locus) - SQualifier("product", Product) + QQualifier("product", Product) QQualifier("inference", "similar to DNA sequence:" Simil) QQualifier("translation", Translat)