diff --git a/detectors/cds/bin/do_rps12.sh b/detectors/cds/bin/do_rps12.sh index 30a57ed..a4ffeb7 100755 --- a/detectors/cds/bin/do_rps12.sh +++ b/detectors/cds/bin/do_rps12.sh @@ -398,6 +398,17 @@ blastx \ { print $0 } + ' | \ + $AwkCmd ' + # + # Adds the trans_splicing qualifier + # + /^FT \/translation=/ { + print "FT /trans_splicing" + } + { + print $0 + } ' > $dest done @@ -446,4 +457,4 @@ exit 0 # BRR.chloro_1 NC_018117_rps12_2 94.87 39 2 0 70611 70495 1 39 2e-16 78.6 - +# /trans_splicing