From 06f36ccdd39d7613900ba21c675cfa765c4cf088 Mon Sep 17 00:00:00 2001
From: Eric Coissac <eric.coissac@metabarcoding.org>
Date: Sat, 29 Apr 2023 07:08:26 +0200
Subject: [PATCH] Add the transsplicing qualifier

Former-commit-id: 1b155125047cbee1cccd12ee6865502f36172566
Former-commit-id: bf4174556214216eeb4e1720c5e9e3cb482bae2b
---
 detectors/cds/bin/do_rps12.sh | 13 ++++++++++++-
 1 file changed, 12 insertions(+), 1 deletion(-)

diff --git a/detectors/cds/bin/do_rps12.sh b/detectors/cds/bin/do_rps12.sh
index 30a57ed..a4ffeb7 100755
--- a/detectors/cds/bin/do_rps12.sh
+++ b/detectors/cds/bin/do_rps12.sh
@@ -398,6 +398,17 @@ blastx \
             {
                 print $0
             }       
+        ' | \
+        $AwkCmd '
+            #
+            # Adds the trans_splicing qualifier
+            #
+            /^FT                   \/translation=/ {
+                print "FT                   /trans_splicing"
+            }
+            {
+                print $0
+            }       
         ' > $dest
         done
          
@@ -446,4 +457,4 @@ exit 0
 # BRR.chloro_1	NC_018117_rps12_2	94.87	39	2	0	70611	70495	1	39	2e-16	78.6
 
 
-
+# /trans_splicing