diff --git a/src/Makefile b/src/Makefile
index ba89d91..1ba116a 100755
--- a/src/Makefile
+++ b/src/Makefile
@@ -19,7 +19,6 @@ include ../config/auto.conf
 
 DIRS = aragorn   \
        clustalo  \
-       gnuparallel \
        exonerate \
        hmmer3    \
        kimono    \