From 478a6bdca72f4aeda60c640cb9027a968a94921e Mon Sep 17 00:00:00 2001 From: Eric Coissac Date: Sun, 25 May 2025 13:43:43 +0200 Subject: [PATCH] Patch RPS12 detection --- detectors/cds/bin/do_rps12.sh | 7 +------ 1 file changed, 1 insertion(+), 6 deletions(-) diff --git a/detectors/cds/bin/do_rps12.sh b/detectors/cds/bin/do_rps12.sh index 5259c4e..633f9c5 100755 --- a/detectors/cds/bin/do_rps12.sh +++ b/detectors/cds/bin/do_rps12.sh @@ -276,11 +276,7 @@ blastx \ # n=0 - for f in *.res ; do - loginfo "processing $f" - xxx=$(cat $f) - echo -e "\n==============\n$xxx\n==============\n" 1>&2 - + for f in *.res ; do ((n=n+1)) mv $f $f.ori if [[ -z "$TEMP" ]] ; then @@ -288,7 +284,6 @@ blastx \ else dest="$TEMP/$f" fi - loginfo "Destination file $dest" header=$(head -1 ${f/.rps12.res/.fasta}) loginfo "Header: $header" L2=$(sed -E 's/^.*limit=([0-9]+);.*$/\1/' <<< $header)