From 4e688d0a898f6bc0338adc0aa49b2c10b8bc8507 Mon Sep 17 00:00:00 2001 From: Eric Coissac Date: Mon, 5 Oct 2015 23:28:09 -0300 Subject: [PATCH] add gitignore files Former-commit-id: 955ee956322e30388eac7e5322113e0783513e45 Former-commit-id: 212c98038aeb0c99043ef70048bf205766b75610 --- ports/.gitignore | 1 + src/aragorn/.gitignore | 2 ++ src/clustalo/argtable/.gitignore | 1 + src/clustalo/clustalo/.gitignore | 1 + src/exonerate/.gitignore | 1 + src/exonerate/exonerate/.gitignore | 1 + src/exonerate/gettext/.gitignore | 1 + src/exonerate/glib2/.gitignore | 1 + src/exonerate/libffi/.gitignore | 1 + src/exonerate/pkg-config/.gitignore | 1 + src/hmmer3/hmmer3/.gitignore | 1 + src/ncbiblast/binaries/.gitignore | 1 + src/repseek/repseek-2014.09/.gitignore | 23 +++++++++++++++++++ src/sequtils/lxpack/src/Abisrc/.gitignore | 2 ++ src/sequtils/lxpack/src/Biosrc/.gitignore | 3 +++ src/sequtils/lxpack/src/Fastasrc/.gitignore | 2 ++ src/sequtils/lxpack/src/Utilsrc/.gitignore | 13 +++++++++++ src/sumaclust/sumaclust_v1.0.10/.gitignore | 3 +++ .../sumalibs/libfasta/.gitignore | 6 +++++ .../sumalibs/libfile/.gitignore | 2 ++ .../sumalibs/liblcs/.gitignore | 3 +++ .../sumalibs/libutils/.gitignore | 3 +++ src/sumatra/sumatra-1.0.10/.gitignore | 3 +++ 23 files changed, 76 insertions(+) create mode 100644 ports/.gitignore create mode 100644 src/aragorn/.gitignore create mode 100644 src/clustalo/argtable/.gitignore create mode 100644 src/clustalo/clustalo/.gitignore create mode 100644 src/exonerate/.gitignore create mode 100644 src/exonerate/exonerate/.gitignore create mode 100644 src/exonerate/gettext/.gitignore create mode 100644 src/exonerate/glib2/.gitignore create mode 100644 src/exonerate/libffi/.gitignore create mode 100644 src/exonerate/pkg-config/.gitignore create mode 100644 src/hmmer3/hmmer3/.gitignore create mode 100644 src/ncbiblast/binaries/.gitignore create mode 100644 src/repseek/repseek-2014.09/.gitignore create mode 100644 src/sequtils/lxpack/src/Abisrc/.gitignore create mode 100644 src/sequtils/lxpack/src/Biosrc/.gitignore create mode 100644 src/sequtils/lxpack/src/Fastasrc/.gitignore create mode 100644 src/sequtils/lxpack/src/Utilsrc/.gitignore create mode 100644 src/sumaclust/sumaclust_v1.0.10/.gitignore create mode 100644 src/sumaclust/sumaclust_v1.0.10/sumalibs/libfasta/.gitignore create mode 100644 src/sumaclust/sumaclust_v1.0.10/sumalibs/libfile/.gitignore create mode 100644 src/sumaclust/sumaclust_v1.0.10/sumalibs/liblcs/.gitignore create mode 100644 src/sumaclust/sumaclust_v1.0.10/sumalibs/libutils/.gitignore create mode 100644 src/sumatra/sumatra-1.0.10/.gitignore diff --git a/ports/.gitignore b/ports/.gitignore new file mode 100644 index 0000000..7eb7828 --- /dev/null +++ b/ports/.gitignore @@ -0,0 +1 @@ +/i386-darwin/ diff --git a/src/aragorn/.gitignore b/src/aragorn/.gitignore new file mode 100644 index 0000000..d78571d --- /dev/null +++ b/src/aragorn/.gitignore @@ -0,0 +1,2 @@ +/aragorn +/aragorn1.2.36.o diff --git a/src/clustalo/argtable/.gitignore b/src/clustalo/argtable/.gitignore new file mode 100644 index 0000000..3f0916a --- /dev/null +++ b/src/clustalo/argtable/.gitignore @@ -0,0 +1 @@ +/build.i386-darwin/ diff --git a/src/clustalo/clustalo/.gitignore b/src/clustalo/clustalo/.gitignore new file mode 100644 index 0000000..3f0916a --- /dev/null +++ b/src/clustalo/clustalo/.gitignore @@ -0,0 +1 @@ +/build.i386-darwin/ diff --git a/src/exonerate/.gitignore b/src/exonerate/.gitignore new file mode 100644 index 0000000..3f0916a --- /dev/null +++ b/src/exonerate/.gitignore @@ -0,0 +1 @@ +/build.i386-darwin/ diff --git a/src/exonerate/exonerate/.gitignore b/src/exonerate/exonerate/.gitignore new file mode 100644 index 0000000..3f0916a --- /dev/null +++ b/src/exonerate/exonerate/.gitignore @@ -0,0 +1 @@ +/build.i386-darwin/ diff --git a/src/exonerate/gettext/.gitignore b/src/exonerate/gettext/.gitignore new file mode 100644 index 0000000..3f0916a --- /dev/null +++ b/src/exonerate/gettext/.gitignore @@ -0,0 +1 @@ +/build.i386-darwin/ diff --git a/src/exonerate/glib2/.gitignore b/src/exonerate/glib2/.gitignore new file mode 100644 index 0000000..3f0916a --- /dev/null +++ b/src/exonerate/glib2/.gitignore @@ -0,0 +1 @@ +/build.i386-darwin/ diff --git a/src/exonerate/libffi/.gitignore b/src/exonerate/libffi/.gitignore new file mode 100644 index 0000000..3f0916a --- /dev/null +++ b/src/exonerate/libffi/.gitignore @@ -0,0 +1 @@ +/build.i386-darwin/ diff --git a/src/exonerate/pkg-config/.gitignore b/src/exonerate/pkg-config/.gitignore new file mode 100644 index 0000000..3f0916a --- /dev/null +++ b/src/exonerate/pkg-config/.gitignore @@ -0,0 +1 @@ +/build.i386-darwin/ diff --git a/src/hmmer3/hmmer3/.gitignore b/src/hmmer3/hmmer3/.gitignore new file mode 100644 index 0000000..3f0916a --- /dev/null +++ b/src/hmmer3/hmmer3/.gitignore @@ -0,0 +1 @@ +/build.i386-darwin/ diff --git a/src/ncbiblast/binaries/.gitignore b/src/ncbiblast/binaries/.gitignore new file mode 100644 index 0000000..5b0895b --- /dev/null +++ b/src/ncbiblast/binaries/.gitignore @@ -0,0 +1 @@ +/bin.i386-darwin/ diff --git a/src/repseek/repseek-2014.09/.gitignore b/src/repseek/repseek-2014.09/.gitignore new file mode 100644 index 0000000..f491581 --- /dev/null +++ b/src/repseek/repseek-2014.09/.gitignore @@ -0,0 +1,23 @@ +/align_blast2like.o +/align_di.o +/align_matrix.o +/align_seeds.o +/families_2seqs.o +/families.o +/filter.o +/filter2seq.o +/help.o +/KMRK_mask.o +/KMRK_merge_seeds.o +/KMRK_Seeds.o +/KMRK.o +/lmin.o +/memory_align.o +/memory.o +/output.o +/read_seeds.o +/readfst.o +/repseek +/sequence.o +/smin.o +/sort.o diff --git a/src/sequtils/lxpack/src/Abisrc/.gitignore b/src/sequtils/lxpack/src/Abisrc/.gitignore new file mode 100644 index 0000000..8de6e7f --- /dev/null +++ b/src/sequtils/lxpack/src/Abisrc/.gitignore @@ -0,0 +1,2 @@ +/libaabi.a +/libaabi.o diff --git a/src/sequtils/lxpack/src/Biosrc/.gitignore b/src/sequtils/lxpack/src/Biosrc/.gitignore new file mode 100644 index 0000000..5e7e88a --- /dev/null +++ b/src/sequtils/lxpack/src/Biosrc/.gitignore @@ -0,0 +1,3 @@ +/bioseq.o +/libbio.a +/string.o diff --git a/src/sequtils/lxpack/src/Fastasrc/.gitignore b/src/sequtils/lxpack/src/Fastasrc/.gitignore new file mode 100644 index 0000000..fbd51a9 --- /dev/null +++ b/src/sequtils/lxpack/src/Fastasrc/.gitignore @@ -0,0 +1,2 @@ +/libfasta.a +/libfasta.o diff --git a/src/sequtils/lxpack/src/Utilsrc/.gitignore b/src/sequtils/lxpack/src/Utilsrc/.gitignore new file mode 100644 index 0000000..41331ee --- /dev/null +++ b/src/sequtils/lxpack/src/Utilsrc/.gitignore @@ -0,0 +1,13 @@ +/util_codon_skew +/util_codon_skew_corr +/util_complinv +/util_cut +/util_skew +/util_skew_chi_mono +/util_skew_mono +/util_skew_teta +/util_tab_aa +/util_tab_codon +/util_tab_dinuc +/util_tab_nuc +/util_translate diff --git a/src/sumaclust/sumaclust_v1.0.10/.gitignore b/src/sumaclust/sumaclust_v1.0.10/.gitignore new file mode 100644 index 0000000..35c0f0e --- /dev/null +++ b/src/sumaclust/sumaclust_v1.0.10/.gitignore @@ -0,0 +1,3 @@ +/mtcompare_sumaclust.o +/sumaclust +/sumaclust.o diff --git a/src/sumaclust/sumaclust_v1.0.10/sumalibs/libfasta/.gitignore b/src/sumaclust/sumaclust_v1.0.10/sumalibs/libfasta/.gitignore new file mode 100644 index 0000000..141ef27 --- /dev/null +++ b/src/sumaclust/sumaclust_v1.0.10/sumalibs/libfasta/.gitignore @@ -0,0 +1,6 @@ +/fasta_header_handler.o +/fasta_header_parser.o +/fasta_seq_writer.o +/header_mem_handler.o +/libfasta.a +/sequence.o diff --git a/src/sumaclust/sumaclust_v1.0.10/sumalibs/libfile/.gitignore b/src/sumaclust/sumaclust_v1.0.10/sumalibs/libfile/.gitignore new file mode 100644 index 0000000..2d356ae --- /dev/null +++ b/src/sumaclust/sumaclust_v1.0.10/sumalibs/libfile/.gitignore @@ -0,0 +1,2 @@ +/fileHandling.o +/libfile.a diff --git a/src/sumaclust/sumaclust_v1.0.10/sumalibs/liblcs/.gitignore b/src/sumaclust/sumaclust_v1.0.10/sumalibs/liblcs/.gitignore new file mode 100644 index 0000000..cce097b --- /dev/null +++ b/src/sumaclust/sumaclust_v1.0.10/sumalibs/liblcs/.gitignore @@ -0,0 +1,3 @@ +/liblcs.a +/sse_banded_LCS_alignment.o +/upperband.o diff --git a/src/sumaclust/sumaclust_v1.0.10/sumalibs/libutils/.gitignore b/src/sumaclust/sumaclust_v1.0.10/sumalibs/libutils/.gitignore new file mode 100644 index 0000000..6a80a09 --- /dev/null +++ b/src/sumaclust/sumaclust_v1.0.10/sumalibs/libutils/.gitignore @@ -0,0 +1,3 @@ +/debug.o +/libutils.a +/utilities.o diff --git a/src/sumatra/sumatra-1.0.10/.gitignore b/src/sumatra/sumatra-1.0.10/.gitignore new file mode 100644 index 0000000..6f12ae8 --- /dev/null +++ b/src/sumatra/sumatra-1.0.10/.gitignore @@ -0,0 +1,3 @@ +/mtcompare_sumatra.o +/sumatra +/sumatra.o