diff --git a/detectors/cds/bin/do_exonerate.csh b/detectors/cds/bin/do_exonerate.csh index c57b7fb..7a20987 100755 --- a/detectors/cds/bin/do_exonerate.csh +++ b/detectors/cds/bin/do_exonerate.csh @@ -185,7 +185,7 @@ $AwkCmd -v MAX_SPAN=$PASS1_MAX_SPAN \ # get annotations # -egrep "^$ProtName " $ProtDir/Annot.lst | awk '{print "c annot", $0}' > T_$$ +egrep "^$ProtName " $ProtDir/Annot.lst | $AwkCmd '{print "c annot", $0}' > T_$$ # # extend start/stop