From 54413e7420a145d38b929c65879aafb8e5cc294e Mon Sep 17 00:00:00 2001
From: Eric Coissac <eric.coissac@metabarcoding.org>
Date: Sun, 9 Oct 2016 01:25:57 -0300
Subject: [PATCH] Change awk to $AwkCmd

Signed-off-by: Eric Coissac <eric.coissac@metabarcoding.org>
Former-commit-id: 79d7c6cc4333c8f72cef71f9c5323c151bb0e6b7
Former-commit-id: 869cf28bb894c95297fc0f80e424a55d347f2a65
---
 detectors/cds/bin/do_exonerate.csh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/detectors/cds/bin/do_exonerate.csh b/detectors/cds/bin/do_exonerate.csh
index c57b7fb..7a20987 100755
--- a/detectors/cds/bin/do_exonerate.csh
+++ b/detectors/cds/bin/do_exonerate.csh
@@ -185,7 +185,7 @@ $AwkCmd -v MAX_SPAN=$PASS1_MAX_SPAN         \
 # get annotations
 #
 
-egrep "^$ProtName " $ProtDir/Annot.lst | awk '{print "c annot", $0}' > T_$$
+egrep "^$ProtName " $ProtDir/Annot.lst | $AwkCmd '{print "c annot", $0}' > T_$$
 
 #
 # extend start/stop