diff --git a/data/trna/CAU_tRNA_DB.fasta b/data/trna/CAU_tRNA_DB.fasta new file mode 100644 index 0000000..9856db5 --- /dev/null +++ b/data/trna/CAU_tRNA_DB.fasta @@ -0,0 +1,1257 @@ +>trnI_NC_000927_29 gbac=NC_000927; trna=trnI; taxid=31312; distance=0; count=2; cluster=trnI_NC_000927; cluster_score=1.000000; cluster_center=True; +gcatccatagcctagcggttaaggcagtcgactcataatcggaatatcgctggttcgaatccagctggat +gca +>trnI_NC_001568_40 gbac=NC_001568; trna=trnI; taxid=4177; distance=1; count=2; cluster=trnI_NC_001568; cluster_score=1.000000; cluster_center=True; +gcatccatggcttaatggttaaagcgcccaactcataattggcgaatttgtaggttcaattcctactgga +tgcac +>trnI_NC_001865_92 gbac=NC_001865; trna=trnI; taxid=3077; distance=0; count=1; cluster=trnI_NC_001865; cluster_score=1.000000; cluster_center=True; +gcacctatggcagagtggtcgattgcaccgcactcataatgcggtttcgaaagaacatcgttggttcaaa +cccaactgggtgca +>trnI_NC_003386_117 gbac=NC_003386; trna=trnI; taxid=3240; distance=0; count=1; cluster=trnI_NC_003386; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggtaaaagcacccgactcataatcggcgaattcgcaggttcaattcctgttgga +tgca +>trnI_NC_005087_100 gbac=NC_005087; trna=trnI; taxid=3218; distance=0; count=1; cluster=trnI_NC_005087; cluster_score=1.000000; cluster_center=True; +gcatccatagctgaacggttaaagcacccaactcataattggagaattcgcaggttcaactcctgttgga +tgca +>trnI_NC_006084_2 gbac=NC_006084; trna=trnI; taxid=717233; distance=1; count=137; cluster=trnI_NC_006084; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggtaaatttgcgggttcaattcctgctgga +tgcac +>trnI_NC_008097_91 gbac=NC_008097; trna=trnI; taxid=55564; distance=2; count=1; cluster=trnI_NC_008097; cluster_score=1.000000; cluster_center=True; +tgtatccatggctgagcggttaaagcgcccaactcataattggagaattcgcaggttcgaatcctgctgg +atgcatc +>trnI_NC_008100_54 gbac=NC_008100; trna=trnI; taxid=145475; distance=0; count=1; cluster=trnI_NC_008100; cluster_score=1.000000; cluster_center=True; +gcatctatggcagagtggtcgaatgcaccgcactcataatgcggaattataaacgtcgttggttcaaacc +caactggatgca +>trnI_NC_008116_50 gbac=NC_008116; trna=trnI; taxid=102822; distance=1; count=1; cluster=trnI_NC_008116; cluster_score=1.000000; cluster_center=True; +gcatccatggctgagtggttaaagcacccaactcataattggttttttcgcgggttcgagtcctgctgga +tgcac +>trnI_NC_008117_49 gbac=NC_008117; trna=trnI; taxid=35869; distance=0; count=1; cluster=trnI_NC_008117; cluster_score=1.000000; cluster_center=True; +gcatccatggctgagtggttaaagcacccaactcataattgggcacttcgcgggttcgagtcctgctgga +tgca +>trnI_NC_008336_7 gbac=NC_008336; trna=trnI; taxid=41776; distance=1; count=8; cluster=trnI_NC_008336; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcgaattcgtaggttcaattcctgctgga +tgcac +>trnI_NC_008372_89 gbac=NC_008372; trna=trnI; taxid=55999; distance=1; count=1; cluster=trnI_NC_008372; cluster_score=1.000000; cluster_center=True; +tgtactcttggccgagcggtttaggcaatcgactcataatcgattttaggtaggttcaactcctacaggg +tgcag +>trnI_NC_008796_20 gbac=NC_008796; trna=trnI; taxid=334596; distance=0; count=4; cluster=trnI_NC_008796; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcaaattcgtaggttcaattcctgctgga +tgca +>trnI_NC_009600_128 gbac=NC_009600; trna=trnI; taxid=145286; distance=1; count=1; cluster=trnI_NC_009600; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcgaattcgtgggttcaattcctgctgga +tgcac +>trnI_NC_009681_84 gbac=NC_009681; trna=trnI; taxid=34116; distance=1; count=1; cluster=trnI_NC_009681; cluster_score=1.000000; cluster_center=True; +tgcatgcatggctgagtggtcgatagcaacagactcataatctgtctccgttaggacatcacaggttcaa +accctgttgcatgcaa +>trnI_NC_009766_108 gbac=NC_009766; trna=trnI; taxid=4129; distance=0; count=1; cluster=trnI_NC_009766; cluster_score=1.000000; cluster_center=True; +gcatccatggctaagcggttaaagcgcccaactcataattggtgaagtcgtaggttcaattcctactgga +tgca +>trnI_NC_009808_17 gbac=NC_009808; trna=trnI; taxid=4121; distance=1; count=4; cluster=trnI_NC_009808; cluster_score=1.000000; cluster_center=True; +gcatccatggctgagtggtgaaagcgcccaactcataattggcgaagtcgtaggttcaattcctactgga +tgcac +>trnI_NC_009949_23 gbac=NC_009949; trna=trnI; taxid=437280; distance=1; count=4; cluster=trnI_NC_009949; cluster_score=1.000000; cluster_center=True; +gcatccatggctaagtggttaaagcgcccaactcataattggcgaagtcgtaggttcaattcctactgga +tgcac +>trnI_NC_009963_109 gbac=NC_009963; trna=trnI; taxid=476139; distance=0; count=1; cluster=trnI_NC_009963; cluster_score=1.000000; cluster_center=True; +gcatccatggctaagtggttaaagcgcccaactcataattggtgaagtcgtaggttcaattcctactgga +tgca +>trnI_NC_010093_11 gbac=NC_010093; trna=trnI; taxid=263995; distance=0; count=6; cluster=trnI_NC_010093; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcgaattcgtaggttcaattcctgctgga +tgca +>trnI_NC_010109_19 gbac=NC_010109; trna=trnI; taxid=4472; distance=1; count=4; cluster=trnI_NC_010109; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcaaattcgtaggttcaattcctactgga +tgcac +>trnI_NC_010359_71 gbac=NC_010359; trna=trnI; taxid=280810; distance=1; count=1; cluster=trnI_NC_010359; cluster_score=1.000000; cluster_center=True; +gcattcatggctgaatggttaaggcacccaactcataattggcgaactcacaggttcaattcctgttgaa +tgcac +>trnI_NC_010361_5 gbac=NC_010361; trna=trnI; taxid=3942; distance=1; count=14; cluster=trnI_NC_010361; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcgaattcgtgggttcaattcctactgga +tgcac +>trnI_NC_010442_70 gbac=NC_010442; trna=trnI; taxid=28494; distance=1; count=1; cluster=trnI_NC_010442; cluster_score=1.000000; cluster_center=True; +gcattcatggctgaatggttaaagcacccaactcataattggcgaattcgtaggttcaattcctactgga +tgcac +>trnI_NC_010654_42 gbac=NC_010654; trna=trnI; taxid=3377; distance=1; count=2; cluster=trnI_NC_010654; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcgaactcgcaggttcaattcctgctgga +tgcac +>trnI_NC_011031_96 gbac=NC_011031; trna=trnI; taxid=55995; distance=0; count=1; cluster=trnI_NC_011031; cluster_score=1.000000; cluster_center=True; +gcacttttggccgagcggtttaggcaatcgactcataatcgattttaggtgggttcaactcctacaaggt +gca +>trnI_NC_011152_10 gbac=NC_011152; trna=trnI; taxid=3332; distance=0; count=6; cluster=trnI_NC_011152; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggtgaactcgcgggttcaattcctgctgga +tgca +>trnI_NC_011828_13 gbac=NC_011828; trna=trnI; taxid=3900; distance=1; count=5; cluster=trnI_NC_011828; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcacccaactcataattggcgaagtcgtaggttcaattcctactgga +tgcac +>trnI_NC_011930_18 gbac=NC_011930; trna=trnI; taxid=3324; distance=0; count=4; cluster=trnI_NC_011930; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcacccaactcataattggcgaactcgcgggttcaattcctgctgga +tgca +>trnI_NC_011942_114 gbac=NC_011942; trna=trnI; taxid=33153; distance=1; count=1; cluster=trnI_NC_011942; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatgggtaaagcgcccaactcataattggcgaactcgcggggttcaattcctggctg +gatgcac +>trnI_NC_012978_33 gbac=NC_012978; trna=trnI; taxid=3074; distance=1; count=2; cluster=trnI_NC_012978; cluster_score=1.000000; cluster_center=True; +tgcatccgtggcagagtggtcgattgcaccgcactcataatgcggctccgaaaggacatcgttggttcaa +gtccaaccggatgcaa +>trnI_NC_014057_125 gbac=NC_014057; trna=trnI; taxid=3888; distance=0; count=1; cluster=trnI_NC_014057; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggagaagtcgtaggttcaattcctactgga +tgca +>trnI_NC_014063_47 gbac=NC_014063; trna=trnI; taxid=3860; distance=0; count=1; cluster=trnI_NC_014063; cluster_score=1.000000; cluster_center=True; +gcatccatggctgagtggttaaagcacccaactcataattggcgaagtcgtgggttcaattcctactgga +tgca +>trnI_NC_014573_135 gbac=NC_014573; trna=trnI; taxid=326026; distance=1; count=1; cluster=trnI_NC_014573; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggtgaagtcgtaggttcaattcctactgga +tgcac +>trnI_NC_014582_129 gbac=NC_014582; trna=trnI; taxid=163694; distance=0; count=1; cluster=trnI_NC_014582; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcgaatttgtaggttcaattcctactgga +tgca +>trnI_NC_014675_45 gbac=NC_014675; trna=trnI; taxid=49763; distance=1; count=1; cluster=trnI_NC_014675; cluster_score=1.000000; cluster_center=True; +gcatccatggctgagtggtcaaagcacccaactcataattggagaattcgcaggttcaattcctgctgga +tgcac +>trnI_NC_014699_37 gbac=NC_014699; trna=trnI; taxid=3258; distance=0; count=2; cluster=trnI_NC_014699; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaacggttaaagcacccgactcataatcggcgaattcacaggttcaactcctgttgga +tgca +>trnI_NC_014874_39 gbac=NC_014874; trna=trnI; taxid=112168; distance=0; count=2; cluster=trnI_NC_014874; cluster_score=1.000000; cluster_center=True; +gcatccgtggctgaatggttaaagcgcccaactcataattggcaaattcgtaggttcaattcctgctgga +tgcac +>trnI_NC_015402_122 gbac=NC_015402; trna=trnI; taxid=70216; distance=0; count=1; cluster=trnI_NC_015402; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcacccaactcataattggcgaacttacaggttcaactcctgttgga +tgca +>trnI_NC_015645_95 gbac=NC_015645; trna=trnI; taxid=104533; distance=0; count=1; cluster=trnI_NC_015645; cluster_score=1.000000; cluster_center=True; +gcacttttggccgagcggttgaggcaatcgactcataatcgatttaaggtaggttcaactcctacaaggt +gca +>trnI_NC_016065_12 gbac=NC_016065; trna=trnI; taxid=50187; distance=1; count=6; cluster=trnI_NC_016065; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggtaaaagcacccaactcataattgggaagtcgcgggttcaattcctgctggat +gcac +>trnI_NC_016986_127 gbac=NC_016986; trna=trnI; taxid=3311; distance=1; count=1; cluster=trnI_NC_016986; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcgaattcgcgggttcaattcctgctgga +tgcac +>trnI_NC_017006_113 gbac=NC_017006; trna=trnI; taxid=996148; distance=1; count=1; cluster=trnI_NC_017006; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaacggttaaagcacccgactcataatcggcgaattcacaggttcaactcctgttgga +tgcac +>trnI_NC_019616_126 gbac=NC_019616; trna=trnI; taxid=13750; distance=0; count=1; cluster=trnI_NC_019616; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggagagttcgtaggttcaattcctactgga +tgca +>trnI_NC_020147_111 gbac=NC_020147; trna=trnI; taxid=1267209; distance=0; count=1; cluster=trnI_NC_020147; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaacggtcaaagcacccgactcataatcggcgaattcgcaggttcaacccctgctgga +tgca +>trnI_NC_020259_14 gbac=NC_020259; trna=trnI; taxid=13813; distance=0; count=5; cluster=trnI_NC_020259; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaacggtcaaagcacccaactcataattggcgaattcacaggttcaactcctgttgga +tgca +>trnI_NC_020321_118 gbac=NC_020321; trna=trnI; taxid=120273; distance=0; count=1; cluster=trnI_NC_020321; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggtcaaagcacccaactcataattgggaagtcgcgggttcaattcctgctggat +gca +>trnI_NC_020321_119 gbac=NC_020321; trna=trnI; taxid=120273; distance=1; count=1; cluster=trnI_NC_020321; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggtcaaagcacccaactcataattgggaagtcgcgggttcaattcctgctggat +gcac +>trnI_NC_020438_75 gbac=NC_020438; trna=trnI; taxid=33097; distance=1; count=1; cluster=trnI_NC_020438; cluster_score=1.000000; cluster_center=True; +tgcactgttggccgagcggatgaggcaaacgactcataatcgttaccagataggttcaactcctatacgg +tgcaa +>trnI_NC_021109_94 gbac=NC_021109; trna=trnI; taxid=330485; distance=0; count=1; cluster=trnI_NC_021109; cluster_score=1.000000; cluster_center=True; +gcactgttggccgagcggataaggcaaacgactcataatcgttctaagataggttcaactcctatacagt +gca +>trnI_NC_021110_115 gbac=NC_021110; trna=trnI; taxid=147282; distance=1; count=1; cluster=trnI_NC_021110; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggtaaaagcacccaactcataattgggaagtcgcaggttcaattcctgttggat +gcac +>trnI_NC_022136_38 gbac=NC_022136; trna=trnI; taxid=13824; distance=0; count=2; cluster=trnI_NC_022136; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaacggtcaaagcacccaactcataattggcgaattcgcaggttcaactcctgttgga +tgca +>trnI_NC_023119_120 gbac=NC_023119; trna=trnI; taxid=60851; distance=2; count=1; cluster=trnI_NC_023119; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggtcaaagcgcccaactcataattgggaagtcgcgggttcaattcctgctggat +gcacc +>trnI_NC_023119_55 gbac=NC_023119; trna=trnI; taxid=60851; distance=0; count=1; cluster=trnI_NC_023119; cluster_score=1.000000; cluster_center=True; +gcatctatggctgaatggtcaaagcgcccaactcataattgggaagtcacgggttcaattcctgctggat +gca +>trnI_NC_023120_6 gbac=NC_023120; trna=trnI; taxid=36012; distance=0; count=11; cluster=trnI_NC_023120; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggtaaaagcacccaactcataattgggaagtcgcgggttcaattcctgctggat +gca +>trnI_NC_023131_132 gbac=NC_023131; trna=trnI; taxid=4179; distance=1; count=1; cluster=trnI_NC_023131; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggctaatttgtaggttcaattcctactgga +tgcac +>trnI_NC_023132_131 gbac=NC_023132; trna=trnI; taxid=223125; distance=1; count=1; cluster=trnI_NC_023132; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcgattttgtaggttcaattcctactgga +tgcac +>trnI_NC_023260_24 gbac=NC_023260; trna=trnI; taxid=253189; distance=0; count=3; cluster=trnI_NC_023260; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcgaattcgtaggttcaattcctactgga +tgca +>trnI_NC_023356_121 gbac=NC_023356; trna=trnI; taxid=120072; distance=1; count=1; cluster=trnI_NC_023356; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcacccaactcataattggcaaattcgtaggttcaattcctgctgga +tgcac +>trnI_NC_023449_22 gbac=NC_023449; trna=trnI; taxid=93677; distance=1; count=4; cluster=trnI_NC_023449; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcaaatttgcgggttcaattcctgctgga +tgcac +>trnI_NC_023465_130 gbac=NC_023465; trna=trnI; taxid=46066; distance=1; count=1; cluster=trnI_NC_023465; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcgatttcgtaggttcaattcctactgga +tgcac +>trnI_NC_023805_123 gbac=NC_023805; trna=trnI; taxid=1030197; distance=0; count=1; cluster=trnI_NC_023805; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcacccaactcataattgggaagtcgcgggttcaattcctgctggat +gca +>trnI_NC_023833_3 gbac=NC_023833; trna=trnI; taxid=287011; distance=1; count=49; cluster=trnI_NC_023833; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcacccaactcataattggcgaattcgtaggttcaattcctactgga +tgcac +>trnI_NC_024022_21 gbac=NC_024022; trna=trnI; taxid=487038; distance=1; count=4; cluster=trnI_NC_024022; cluster_score=1.000000; cluster_center=True; +tgtatccatggctgaatggtaaaagcacccaactcataattgggaagtcgcgggttcaattcctgctgga +tgcat +>trnI_NC_024035_27 gbac=NC_024035; trna=trnI; taxid=361561; distance=2; count=3; cluster=trnI_NC_024035; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcgaagtcgtaggttcaattcctactgga +tgcacc +>trnI_NC_024036_44 gbac=NC_024036; trna=trnI; taxid=3899; distance=0; count=2; cluster=trnI_NC_024036; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcacccaactcataattggcgaagtcgtaggttcaattcctactgga +tgca +>trnI_NC_024157_110 gbac=NC_024157; trna=trnI; taxid=3284; distance=1; count=1; cluster=trnI_NC_024157; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaacggtcaaagcacccaactcataattggcgaattcacaggttcaactcctgttgga +tgcac +>trnI_NC_024165_134 gbac=NC_024165; trna=trnI; taxid=38716; distance=0; count=1; cluster=trnI_NC_024165; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggtaaatttgcgggttcaattcctgctgga +tgca +>trnI_NC_024168_48 gbac=NC_024168; trna=trnI; taxid=43943; distance=0; count=1; cluster=trnI_NC_024168; cluster_score=1.000000; cluster_center=True; +gcatccatggctgagtggttaaagcacccaactcataattgggcaattcgcgggttcgagtcctgctgga +tgca +>trnI_NC_024169_80 gbac=NC_024169; trna=trnI; taxid=184485; distance=1; count=1; cluster=trnI_NC_024169; cluster_score=1.000000; cluster_center=True; +tgcatccatggctgagtggttaaagcacccgactcataattgggcacttcgcaggttcgaaccctgctgg +atgcag +>trnI_NC_024291_112 gbac=NC_024291; trna=trnI; taxid=37420; distance=0; count=1; cluster=trnI_NC_024291; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaacggttaaagcacccaactcataattggcgaactcacaggttcaactcctgttgga +tgca +>trnI_NC_024717_28 gbac=NC_024717; trna=trnI; taxid=111431; distance=1; count=2; cluster=trnI_NC_024717; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggtaaatttgcgggttcaattccggctgga +tgcac +>trnI_NC_024718_133 gbac=NC_024718; trna=trnI; taxid=145987; distance=1; count=1; cluster=trnI_NC_024718; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggtaaatttgcgggttcaactcctgctgga +tgcac +>trnI_NC_024719_30 gbac=NC_024719; trna=trnI; taxid=862994; distance=1; count=2; cluster=trnI_NC_024719; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggtaaatttgcgggttcaattcttgctgga +tgcac +>trnI_NC_024722_43 gbac=NC_024722; trna=trnI; taxid=863024; distance=1; count=2; cluster=trnI_NC_024722; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggtaaatttgcgggttcaattcatgctgga +tgcac +>trnI_NC_024732_124 gbac=NC_024732; trna=trnI; taxid=103032; distance=1; count=1; cluster=trnI_NC_024732; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcacccaactcataattggtgaattcgtaggttcaattcctactgga +tgccc +>trnI_NC_024845_26 gbac=NC_024845; trna=trnI; taxid=223102; distance=1; count=3; cluster=trnI_NC_024845; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcacccaactcataattggcgacttcgtaggttcaattcctactgga +tgcac +>trnI_NC_024945_116 gbac=NC_024945; trna=trnI; taxid=50176; distance=0; count=1; cluster=trnI_NC_024945; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggtaaaagcacccaactcataattgggaagtcgcgggttcgattcctgctggat +gca +>trnI_NC_025232_31 gbac=NC_025232; trna=trnI; taxid=65975; distance=1; count=2; cluster=trnI_NC_025232; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggtaatttgcgggttcaattcctgctggat +gcac +>trnI_NC_025305_34 gbac=NC_025305; trna=trnI; taxid=101708; distance=2; count=2; cluster=trnI_NC_025305; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcggattcgtaggttcaattcctactgga +tgcacc +>trnI_NC_025524_85 gbac=NC_025524; trna=trnI; taxid=40981; distance=1; count=1; cluster=trnI_NC_025524; cluster_score=1.000000; cluster_center=True; +tgcatgcgtggctgagtggtcgatagcaacagactcataatctgtctccgataggacgtcacaggttcaa +accctgtcgcatgcaa +>trnI_NC_025528_77 gbac=NC_025528; trna=trnI; taxid=3083; distance=1; count=1; cluster=trnI_NC_025528; cluster_score=1.000000; cluster_center=True; +tgcatccatggcagagcggtcgattgcaccgcactcataatgcggttctgaaaagacatcgttggttcaa +acccaactggatgcaa +>trnI_NC_025529_68 gbac=NC_025529; trna=trnI; taxid=173497; distance=0; count=1; cluster=trnI_NC_025529; cluster_score=1.000000; cluster_center=True; +gcattcatggcagagtggtcgattgcaccgcactcataatgcggttctgaaaagacgtcgttggttcaaa +cccaactgaatgca +>trnI_NC_025531_107 gbac=NC_025531; trna=trnI; taxid=33092; distance=0; count=1; cluster=trnI_NC_025531; cluster_score=1.000000; cluster_center=True; +gcatccatggcagagtggtcgattgcaccgcactcataatgcggttctgaaaagacgtcgttggttcaaa +cccaactggatgca +>trnI_NC_025532_105 gbac=NC_025532; trna=trnI; taxid=3102; distance=0; count=1; cluster=trnI_NC_025532; cluster_score=1.000000; cluster_center=True; +gcatccatggcagagtggtcgattgcaccgcactcataatgcggctccgaaaggacatcgttggttcaaa +cccaactggatgca +>trnI_NC_025535_104 gbac=NC_025535; trna=trnI; taxid=1065496; distance=0; count=1; cluster=trnI_NC_025535; cluster_score=1.000000; cluster_center=True; +gcatccatggcagagtggtcgattgcaccgcactcataatgcggccccgaaaggacgtcgttggttcaaa +cccaactggatgca +>trnI_NC_025536_61 gbac=NC_025536; trna=trnI; taxid=155904; distance=0; count=1; cluster=trnI_NC_025536; cluster_score=1.000000; cluster_center=True; +gcatgcatggctgagtggtcgatagcaacggactcataatccgtctctttttagacatcgcaggttcaaa +ccctgctgcatgca +>trnI_NC_025537_59 gbac=NC_025537; trna=trnI; taxid=34148; distance=0; count=1; cluster=trnI_NC_025537; cluster_score=1.000000; cluster_center=True; +gcatgcatggctgagcggttgaaagcagcagactcataatctgtttccctttagggcacacaggttcaaa +tcctgttgcatgca +>trnI_NC_025538_60 gbac=NC_025538; trna=trnI; taxid=160069; distance=0; count=1; cluster=trnI_NC_025538; cluster_score=1.000000; cluster_center=True; +gcatgcatggctgagtggtcgatagcaacggactcataatccgtatccgaaaggacatcgcaggttcaaa +ccctgctgcatgct +>trnI_NC_025541_106 gbac=NC_025541; trna=trnI; taxid=415190; distance=0; count=1; cluster=trnI_NC_025541; cluster_score=1.000000; cluster_center=True; +gcatccatggcagagtggtcgattgcaccgcactcataatgcggttcctaaaggacatcgttggttcaaa +cccaactggatgca +>trnI_NC_025542_63 gbac=NC_025542; trna=trnI; taxid=163310; distance=0; count=1; cluster=trnI_NC_025542; cluster_score=1.000000; cluster_center=True; +gcatgcatggctgagtggtcgatagcagcggactcataatccgtctccgaaaggacatcgcaggttcaaa +ccctgctgcatgca +>trnI_NC_025543_64 gbac=NC_025543; trna=trnI; taxid=106203; distance=0; count=1; cluster=trnI_NC_025543; cluster_score=1.000000; cluster_center=True; +gcatgcatggctgagtggttgaaagcaccagactcataatctgtttcctcttgaaggcacacaggttcaa +atcctgttgcatgca +>trnI_NC_025544_62 gbac=NC_025544; trna=trnI; taxid=163309; distance=0; count=1; cluster=trnI_NC_025544; cluster_score=1.000000; cluster_center=True; +gcatgcatggctgagtggtcgatagcagcggactcataatccgtatccgaaaggacaacgcaggttcaaa +ccctgctgcatgca +>trnI_NC_025546_32 gbac=NC_025546; trna=trnI; taxid=91190; distance=1; count=2; cluster=trnI_NC_025546; cluster_score=1.000000; cluster_center=True; +tgcatccgtggcagagtggtcgattgcaccgcactcataatgcagctcctttgggacatcgttggttcaa +gtccaaccggatgcaa +>trnI_NC_025549_103 gbac=NC_025549; trna=trnI; taxid=97105; distance=0; count=1; cluster=trnI_NC_025549; cluster_score=1.000000; cluster_center=True; +gcatccatggcagagaggtcgattgcatcgcactcataatgcgatttcgaaagaacaccgttggttcaaa +cccaactggatgta +>trnI_NC_025668_99 gbac=NC_025668; trna=trnI; taxid=140003; distance=0; count=1; cluster=trnI_NC_025668; cluster_score=1.000000; cluster_center=True; +gcatccatagctgaacggttaaagcacccaactcataattggagaatccgcaggttcaactcctgttgga +tgca +>trnI_NC_025745_25 gbac=NC_025745; trna=trnI; taxid=97044; distance=1; count=3; cluster=trnI_NC_025745; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcgaagtcgtaggttcaattcctactgga +tgcac +>trnI_NC_026041_15 gbac=NC_026041; trna=trnI; taxid=34343; distance=1; count=5; cluster=trnI_NC_026041; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaacggttaaagcgcccaactcataattggcgaattcgcaggttcaattcctgctgga +tgcac +>trnI_NC_026203_36 gbac=NC_026203; trna=trnI; taxid=989334; distance=2; count=2; cluster=trnI_NC_026203; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcacccaactcataattggcgaattcgtaggttcaattcctactgga +tgcacc +>trnI_NC_026212_101 gbac=NC_026212; trna=trnI; taxid=1592803; distance=1; count=1; cluster=trnI_NC_026212; cluster_score=1.000000; cluster_center=True; +gcatccatagctgaacggttaaagcacccaactcataattggagaattcgcaggttcaactcctgttgga +tgcac +>trnI_NC_026296_16 gbac=NC_026296; trna=trnI; taxid=13469; distance=2; count=5; cluster=trnI_NC_026296; cluster_score=1.000000; cluster_center=True; +gtatccatggctgaatggtaaaagcacccaactcataattgggaagtcgcgggttcaattcctgctggat +gcac +>trnI_NC_026300_8 gbac=NC_026300; trna=trnI; taxid=491814; distance=0; count=7; cluster=trnI_NC_026300; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaacggttaaagcacccaactcataattggcgaattcacaggttcaactcctgttgga +tgca +>trnI_NC_026301_9 gbac=NC_026301; trna=trnI; taxid=3382; distance=1; count=7; cluster=trnI_NC_026301; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcgaactcgcgggttcaattcctgctgga +tgcac +>trnI_NC_026448_73 gbac=NC_026448; trna=trnI; taxid=556037; distance=0; count=1; cluster=trnI_NC_026448; cluster_score=1.000000; cluster_center=True; +gtatccatggctgaaaggttaaagcactcaactcataattggaaaatttgtgggttcaattcctgctgga +tgca +>trnI_NC_026449_41 gbac=NC_026449; trna=trnI; taxid=449980; distance=1; count=2; cluster=trnI_NC_026449; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggaaaagttgtgggttcaattcctgctaga +tgcac +>trnI_NC_026450_52 gbac=NC_026450; trna=trnI; taxid=34341; distance=0; count=1; cluster=trnI_NC_026450; cluster_score=1.000000; cluster_center=True; +gcatctagggctgaatggtcaaagcgcccaactcataattgggaagtcacgggttcaattcctgctggat +gca +>trnI_NC_026778_35 gbac=NC_026778; trna=trnI; taxid=51239; distance=1; count=2; cluster=trnI_NC_026778; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcaaactcgtaggttcaattcctactgga +tgcac +>trnI_NC_026786_1 gbac=NC_026786; trna=trnI; taxid=108411; distance=1; count=146; cluster=trnI_NC_026786; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcaaattcgtaggttcaattcctgctgga +tgcac +>trnI_NC_026892_4 gbac=NC_026892; trna=trnI; taxid=97170; distance=0; count=28; cluster=trnI_NC_026892; cluster_score=1.000000; cluster_center=True; +gcatccatggctgaatggttaaagcgcccaactcataattggcgaactcgcgggttcaattcctgctgga +tgca +>trnM_NC_000927_160 gbac=NC_000927; trna=trnM; taxid=31312; distance=1; count=1; cluster=trnM_NC_000927; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagttggttagagcgtccgtttcatacgcggattgtcactagttcaaatctagtagca +ggcac +>trnM_NC_001865_155 gbac=NC_001865; trna=trnM; taxid=3077; distance=0; count=1; cluster=trnM_NC_001865; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagttggttagagcatccgtctcatacgcggaatgtcactagttcgaatctagtagca +ggcacca +>trnM_NC_003386_115 gbac=NC_003386; trna=trnM; taxid=3240; distance=0; count=1; cluster=trnM_NC_003386; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtatcgctttcataaggcgagagtcattggttcaaatccaatagtag +gta +>trnM_NC_004115_106 gbac=NC_004115; trna=trnM; taxid=96477; distance=0; count=1; cluster=trnM_NC_004115; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagcggttagagtgtcgctttcatacggcgaaggtcattggttcaaatccaatagtag +gta +>trnM_NC_004543_219 gbac=NC_004543; trna=trnM; taxid=48387; distance=0; count=1; cluster=trnM_NC_004543; cluster_score=1.000000; cluster_center=True; +acctacttaacttagtggttagagtatcgctttcatacggcgagagtcattggttcaaatccaatagtag +gta +>trnM_NC_004766_101 gbac=NC_004766; trna=trnM; taxid=13818; distance=0; count=1; cluster=trnM_NC_004766; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagcggtgagagtatcgctttcatacggcgagagtcattggttcgaatccaatagtag +gta +>trnM_NC_005087_37 gbac=NC_005087; trna=trnM; taxid=3218; distance=0; count=3; cluster=trnM_NC_005087; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggtttagagtatcgctttcatacggcgagagtcattggttcaaatccaatagta +ggta +>trnM_NC_005353_56 gbac=NC_005353; trna=trnM; taxid=3055; distance=0; count=2; cluster=trnM_NC_005353; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagttggttagagcgtccgtttcataagctgattgtcactagttcaaatctagtagca +ggca +>trnM_NC_006050_42 gbac=NC_006050; trna=trnM; taxid=34301; distance=0; count=2; cluster=trnM_NC_006050; cluster_score=1.000000; cluster_center=True; +acctacttaacccagtggttagagtgttgctttcatacggcgggagtcattggttcaaatccaatagtag +gta +>trnM_NC_006084_200 gbac=NC_006084; trna=trnM; taxid=717233; distance=1; count=1; cluster=trnM_NC_006084; cluster_score=1.000000; cluster_center=True; +tgcctacttaactcagtggttagagtatagctttcatacggcgggagtcattggttcaaatccaatagta +ggtag +>trnM_NC_008097_201 gbac=NC_008097; trna=trnM; taxid=55564; distance=1; count=1; cluster=trnM_NC_008097; cluster_score=1.000000; cluster_center=True; +tgcctacttaactcagtggttagagtattgctttcataaggcaagagtcattggttcaagtccaatagta +ggcaa +>trnM_NC_008099_138 gbac=NC_008099; trna=trnM; taxid=51324; distance=0; count=1; cluster=trnM_NC_008099; cluster_score=1.000000; cluster_center=True; +gcctgcttaactcagtggtagagtacccgtctcatacgcggagtgtcactagttcgactctagtagcagg +ca +>trnM_NC_008101_147 gbac=NC_008101; trna=trnM; taxid=3088; distance=0; count=1; cluster=trnM_NC_008101; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagttggccagagcatccgtttcatacgcggaaagtcactagttcgaatctagtagca +ggca +>trnM_NC_008101_230 gbac=NC_008101; trna=trnM; taxid=3088; distance=0; count=1; cluster=trnM_NC_008101; cluster_score=1.000000; cluster_center=True; +cgcaggatagagcagtctggtagctcgtggggctcataatcccaatgtcgcaggttcaaatcctgctcct +gcaa +>trnM_NC_008114_216 gbac=NC_008114; trna=trnM; taxid=160070; distance=0; count=1; cluster=trnM_NC_008114; cluster_score=1.000000; cluster_center=True; +tgcggagtagagcagtctggtagctcgcgaggctcataatcttgaggtcgtaggttcgaatcctacctcc +gcta +>trnM_NC_008114_98 gbac=NC_008114; trna=trnM; taxid=160070; distance=0; count=1; cluster=trnM_NC_008114; cluster_score=1.000000; cluster_center=True; +gcctaattagctcagttggttagagcgtccgtctcatacgcggaatgtcactagttcgaatctagtatta +ggca +>trnM_NC_008116_112 gbac=NC_008116; trna=trnM; taxid=102822; distance=0; count=1; cluster=trnM_NC_008116; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggttagagtatcgctttcatacggcgagagtcattggttcaaatccaatagtag +gca +>trnM_NC_008117_107 gbac=NC_008117; trna=trnM; taxid=35869; distance=0; count=1; cluster=trnM_NC_008117; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagcggttagagtgtcgctttcatacggcgagagtcattggttcaagtccaatagtag +gca +>trnM_NC_008289_172 gbac=NC_008289; trna=trnM; taxid=70448; distance=0; count=1; cluster=trnM_NC_008289; cluster_score=1.000000; cluster_center=True; +ggctcggtagctcagtggtagagcagaggactcataatcctaaggtcacaggttcaatccccgttcgagc +ca +>trnM_NC_008289_187 gbac=NC_008289; trna=trnM; taxid=70448; distance=1; count=1; cluster=trnM_NC_008289; cluster_score=1.000000; cluster_center=True; +tagcgggatagagcagtctggtagcttgtaaggctcataatcttaaggtcacaggttcaaatcctgttcc +cgccat +>trnM_NC_008325_26 gbac=NC_008325; trna=trnM; taxid=4039; distance=1; count=3; cluster=trnM_NC_008325; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggttagagtattgctttcatacggcaggagtcattggttcaaatccaatagtag +gta +>trnM_NC_008372_212 gbac=NC_008372; trna=trnM; taxid=55999; distance=1; count=1; cluster=trnM_NC_008372; cluster_score=1.000000; cluster_center=True; +tgcctgcttagctcagttggttagagcatccgtttcatacgcgggatgtcactagttcaagtctagtagt +aggcaa +>trnM_NC_008372_227 gbac=NC_008372; trna=trnM; taxid=55999; distance=2; count=1; cluster=trnM_NC_008372; cluster_score=1.000000; cluster_center=True; +ttgctgggtagagcagtctggtagcttgtggggctcataaccctaaggtcgcaggttcgaatcctgcccc +agccatc +>trnM_NC_008454_116 gbac=NC_008454; trna=trnM; taxid=4031; distance=0; count=1; cluster=trnM_NC_008454; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggttagagtattgctttcatacggcaggagtcgttggttcaaatccaatagtag +gca +>trnM_NC_008457_126 gbac=NC_008457; trna=trnM; taxid=398741; distance=1; count=1; cluster=trnM_NC_008457; cluster_score=1.000000; cluster_center=True; +acctacttaactcagcggttagagtattgctttcatacggcagaagtcattggttcaaatccaatagtag +gtac +>trnM_NC_008535_18 gbac=NC_008535; trna=trnM; taxid=13443; distance=1; count=5; cluster=trnM_NC_008535; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtattgctttcatacggcgagagtcattggttcaaatccaatagtag +gta +>trnM_NC_008590_9 gbac=NC_008590; trna=trnM; taxid=112509; distance=1; count=16; cluster=trnM_NC_008590; cluster_score=1.000000; cluster_center=True; +tgcctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaatccaatagta +ggtaa +>trnM_NC_009599_203 gbac=NC_009599; trna=trnM; taxid=153571; distance=0; count=1; cluster=trnM_NC_009599; cluster_score=1.000000; cluster_center=True; +acctacttaacccagcggttagagtattgctttcatacggcgggagtcattggttcaaatccaatagtag +gta +>trnM_NC_009600_199 gbac=NC_009600; trna=trnM; taxid=145286; distance=0; count=1; cluster=trnM_NC_009600; cluster_score=1.000000; cluster_center=True; +acctacttaacccagtggttagagtattgctttcatacggcaagagtcattggttcaaatccaatagtag +gta +>trnM_NC_009601_73 gbac=NC_009601; trna=trnM; taxid=145284; distance=1; count=1; cluster=trnM_NC_009601; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtattgctttcatacggcggaagtcattggttcaaatccaatagtag +gtac +>trnM_NC_009681_131 gbac=NC_009681; trna=trnM; taxid=34116; distance=0; count=1; cluster=trnM_NC_009681; cluster_score=1.000000; cluster_center=True; +gcctacttagctcagttggttagagcgtccgtctcatacgcggaatgtcactagttcaaatctagtagtg +ggta +>trnM_NC_009681_66 gbac=NC_009681; trna=trnM; taxid=34116; distance=0; count=1; cluster=trnM_NC_009681; cluster_score=1.000000; cluster_center=True; +cgcgggatagagcagtctggtagctcgtagggctcataatcctaaggtcacaggttcaaatcctgttccc +gcta +>trnM_NC_009765_48 gbac=NC_009765; trna=trnM; taxid=35886; distance=0; count=2; cluster=trnM_NC_009765; cluster_score=1.000000; cluster_center=True; +atctacttaactcagtggttagagtactgctttcatacggcgggagtcattggttcaaatccaatagtag +atc +>trnM_NC_009808_44 gbac=NC_009808; trna=trnM; taxid=4121; distance=0; count=2; cluster=trnM_NC_009808; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtaccgctttcatacggcgggagtcattggttcaaatccaatagtag +gta +>trnM_NC_009963_57 gbac=NC_009963; trna=trnM; taxid=476139; distance=1; count=2; cluster=trnM_NC_009963; cluster_score=1.000000; cluster_center=True; +tacctacttaactcagtggttagagtactgctttcatacggcgggaggcattggttcaaatccaatagta +ggtag +>trnM_NC_010093_32 gbac=NC_010093; trna=trnM; taxid=263995; distance=2; count=3; cluster=trnM_NC_010093; cluster_score=1.000000; cluster_center=True; +tacctacttaacccagtggttagagtattgctttcatacggcgggagtcattggttcaaatccaatagta +ggtag +>trnM_NC_010359_124 gbac=NC_010359; trna=trnM; taxid=280810; distance=1; count=1; cluster=trnM_NC_010359; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggttggagtatcgcttccatacggcgagagtcattggttcgaatccaatagtag +gtcc +>trnM_NC_010433_77 gbac=NC_010433; trna=trnM; taxid=3983; distance=1; count=1; cluster=trnM_NC_010433; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtattgctttcatacggcgatagtcattggttcaaatccaatagtag +gta +>trnM_NC_011031_159 gbac=NC_011031; trna=trnM; taxid=55995; distance=0; count=1; cluster=trnM_NC_011031; cluster_score=1.000000; cluster_center=True; +tgctgggtagagcagtctggtagcttgtggggctcataatcccgaggtcgcgggttcgaatcctgcccca +gcac +>trnM_NC_011031_162 gbac=NC_011031; trna=trnM; taxid=55995; distance=0; count=1; cluster=trnM_NC_011031; cluster_score=1.000000; cluster_center=True; +gcctgtttagctcagttggtcagagcatccgtttcatacgcgggatgtcactagttcaaatctagtaaca +ggca +>trnM_NC_012052_139 gbac=NC_012052; trna=trnM; taxid=38588; distance=1; count=1; cluster=trnM_NC_012052; cluster_score=1.000000; cluster_center=True; +gcctgcttaactcagtggtttagagtgtcgctttcatacggcgagagtcattggttcaaatccaatagta +ggta +>trnM_NC_012097_208 gbac=NC_012097; trna=trnM; taxid=41880; distance=1; count=1; cluster=trnM_NC_012097; cluster_score=1.000000; cluster_center=True; +tgcctgcttagctcagtggtagagcgtccgtctcatacgcggcttgtcactagttcgaatctagtagcag +gcaa +>trnM_NC_012575_173 gbac=NC_012575; trna=trnM; taxid=296587; distance=0; count=1; cluster=trnM_NC_012575; cluster_score=1.000000; cluster_center=True; +ggctcggtagcttagtggtagagcaggggactcataatcccaaggtcacaggttcaatccccgttcgagc +ca +>trnM_NC_012575_186 gbac=NC_012575; trna=trnM; taxid=296587; distance=1; count=1; cluster=trnM_NC_012575; cluster_score=1.000000; cluster_center=True; +tagcgggatagagcagtctggtagcttgtaaggctcataatcttaaggtcacaggttcaaatcctgttcc +cgccaa +>trnM_NC_012818_102 gbac=NC_012818; trna=trnM; taxid=204586; distance=0; count=1; cluster=trnM_NC_012818; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagcggttagagtatcgctttcatacggcgagaggcattggttcgaatccaatagtag +gta +>trnM_NC_012978_47 gbac=NC_012978; trna=trnM; taxid=3074; distance=0; count=2; cluster=trnM_NC_012978; cluster_score=1.000000; cluster_center=True; +agcggagtagagcagtctggtagctcgtaaggctcataaccttaaggtcgtaggttcaaatcctatctcc +gctc +>trnM_NC_013086_150 gbac=NC_013086; trna=trnM; taxid=88036; distance=1; count=1; cluster=trnM_NC_013086; cluster_score=1.000000; cluster_center=True; +acctacttaactcagcggtcagagtatcgctttcatacggcgagggtcattggttcgaatccaatagtag +gta +>trnM_NC_013823_58 gbac=NC_013823; trna=trnM; taxid=4733; distance=2; count=2; cluster=trnM_NC_013823; cluster_score=1.000000; cluster_center=True; +tacctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaatccaatagta +ggtag +>trnM_NC_014062_202 gbac=NC_014062; trna=trnM; taxid=38684; distance=1; count=1; cluster=trnM_NC_014062; cluster_score=1.000000; cluster_center=True; +tgcctacttaactcagtggttagagtattgctttcatacggcgagagtcattggttcaaatccaatagta +ggtag +>trnM_NC_014346_145 gbac=NC_014346; trna=trnM; taxid=51328; distance=1; count=1; cluster=trnM_NC_014346; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagtggttagagcacccgtttcatacgcggggtgtcactagttcaactctagtagcag +gcac +>trnM_NC_014346_81 gbac=NC_014346; trna=trnM; taxid=51328; distance=0; count=1; cluster=trnM_NC_014346; cluster_score=1.000000; cluster_center=True; +cgctgggtagagcagtctggtagctcgtggggctcataatcctgaggtcgcaggttcaaatcctgcccca +gcac +>trnM_NC_014348_132 gbac=NC_014348; trna=trnM; taxid=104588; distance=0; count=1; cluster=trnM_NC_014348; cluster_score=1.000000; cluster_center=True; +gcctacttgactcagcggttagagtatcgctttcatacggcgacagtcattggttcgaatccaatagtag +gta +>trnM_NC_014675_12 gbac=NC_014675; trna=trnM; taxid=49763; distance=0; count=7; cluster=trnM_NC_014675; cluster_score=1.000000; cluster_center=True; +acctacttaactcagcggttagagtatcgctttcatacggcgagagtcattggttcaaatccaatagtag +gta +>trnM_NC_015084_62 gbac=NC_015084; trna=trnM; taxid=574566; distance=0; count=2; cluster=trnM_NC_015084; cluster_score=1.000000; cluster_center=True; +tgcgggatagagcagcctggtagctcgcaaggctcataatcttgaagtcgtaggttcaaatcctactccc +gcta +>trnM_NC_015308_8 gbac=NC_015308; trna=trnM; taxid=3981; distance=1; count=16; cluster=trnM_NC_015308; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtatcgctttcatacggcgagagtcattggttcaaatccaatagtag +gta +>trnM_NC_015359_158 gbac=NC_015359; trna=trnM; taxid=554065; distance=3; count=1; cluster=trnM_NC_015359; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagttggttagagcgtccgtctcatacgcggaatgtcactagttcgagtctagtagca +ggcacca +>trnM_NC_015359_223 gbac=NC_015359; trna=trnM; taxid=554065; distance=0; count=1; cluster=trnM_NC_015359; cluster_score=1.000000; cluster_center=True; +agcggagtagagcagtctggtagctcgtaaggctcataaccttaaggccgtgggttcgaatcctacctcc +gctc +>trnM_NC_015402_113 gbac=NC_015402; trna=trnM; taxid=70216; distance=1; count=1; cluster=trnM_NC_015402; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggttagagtatcgttttcatacggcgagagtcattggttcaaatccaatagtag +gta +>trnM_NC_015645_149 gbac=NC_015645; trna=trnM; taxid=104533; distance=0; count=1; cluster=trnM_NC_015645; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagttggtcagagcatccgtttcatacgcgggatgtcactagttcaaatctagtagca +ggca +>trnM_NC_015645_197 gbac=NC_015645; trna=trnM; taxid=104533; distance=1; count=1; cluster=trnM_NC_015645; cluster_score=1.000000; cluster_center=True; +tcgctgggtagagcagtctggtagcttgtggggctcataaccctaaggtcgcaggttcaaatcctgcccc +agccat +>trnM_NC_015899_46 gbac=NC_015899; trna=trnM; taxid=161112; distance=1; count=2; cluster=trnM_NC_015899; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaatccaatagtag +gtac +>trnM_NC_015983_10 gbac=NC_015983; trna=trnM; taxid=412675; distance=0; count=10; cluster=trnM_NC_015983; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtatcgctttcatacggcgggagtcattggttcaaatccaatagtag +gta +>trnM_NC_016063_41 gbac=NC_016063; trna=trnM; taxid=50179; distance=0; count=2; cluster=trnM_NC_016063; cluster_score=1.000000; cluster_center=True; +acccgcttaactcagtggttagagtttcgctttcatacggcgagagtccttggttcaaatctaatagtag +ata +>trnM_NC_016065_39 gbac=NC_016065; trna=trnM; taxid=50187; distance=0; count=2; cluster=trnM_NC_016065; cluster_score=1.000000; cluster_center=True; +acccacttaactcagtggttagagtatcgctctcatacggcgagggtcattggttcaaatccaatagtgg +gta +>trnM_NC_016471_99 gbac=NC_016471; trna=trnM; taxid=48534; distance=0; count=1; cluster=trnM_NC_016471; cluster_score=1.000000; cluster_center=True; +gcctacttaacccagtggttagagtattgctttcatacggcggtagccattggttcaaatccaatagtag +gta +>trnM_NC_016728_3 gbac=NC_016728; trna=trnM; taxid=39899; distance=0; count=37; cluster=trnM_NC_016728; cluster_score=1.000000; cluster_center=True; +acctacttaactcagcggttagagtattgctttcatacggcgggagtcattggttcaaatccaatagtag +gta +>trnM_NC_016732_184 gbac=NC_016732; trna=trnM; taxid=3046; distance=1; count=1; cluster=trnM_NC_016732; cluster_score=1.000000; cluster_center=True; +tagcagggtagagcagtctggtagctcgtggggctcataatcccaaggtcgcaggttcaaatcctgcccc +tgcaaa +>trnM_NC_016733_193 gbac=NC_016733; trna=trnM; taxid=3159; distance=1; count=1; cluster=trnM_NC_016733; cluster_score=1.000000; cluster_center=True; +tcgcgggatagagcagcctggtagctcgcaaggctcataatcttgaggtcgtaggttcgaatcctgctcc +cgctaa +>trnM_NC_016733_60 gbac=NC_016733; trna=trnM; taxid=3159; distance=1; count=2; cluster=trnM_NC_016733; cluster_score=1.000000; cluster_center=True; +tgcctgcttagctcagttggctagagcatccgtttcatacgcggagtgtcactagttcgaatctagtagc +aggcaa +>trnM_NC_016921_11 gbac=NC_016921; trna=trnM; taxid=519533; distance=0; count=10; cluster=trnM_NC_016921; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaatccaatagtag +gta +>trnM_NC_016986_182 gbac=NC_016986; trna=trnM; taxid=3311; distance=0; count=1; cluster=trnM_NC_016986; cluster_score=1.000000; cluster_center=True; +acccacttaactcagtggttagagtatcgcttccatacggcgggagtcattggttcaaatccaatagtag +gta +>trnM_NC_018051_31 gbac=NC_018051; trna=trnM; taxid=3917; distance=2; count=3; cluster=trnM_NC_018051; cluster_score=1.000000; cluster_center=True; +tacctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaatccaatagta +ggtaa +>trnM_NC_018569_157 gbac=NC_018569; trna=trnM; taxid=1208065; distance=0; count=1; cluster=trnM_NC_018569; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagttggttagagcatccgtctcatacgcgggttgtcactggttcaaatctagtagca +ggca +>trnM_NC_018569_224 gbac=NC_018569; trna=trnM; taxid=1208065; distance=0; count=1; cluster=trnM_NC_018569; cluster_score=1.000000; cluster_center=True; +tgcgggatagagcagcctggtagctcgcgaggctcataatcttgaggtcgtaggttcaaatcctactccc +gcta +>trnM_NC_019616_114 gbac=NC_019616; trna=trnM; taxid=13750; distance=1; count=1; cluster=trnM_NC_019616; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggttagagtattgctttcatacggcaagagtcattggttcaaatccaatagtag +gta +>trnM_NC_019628_177 gbac=NC_019628; trna=trnM; taxid=304445; distance=0; count=1; cluster=trnM_NC_019628; cluster_score=1.000000; cluster_center=True; +acctacttaactcaatggttagagtatcgctttcatacggcgagagtcattggttcaagtccaatagtag +gta +>trnM_NC_020147_110 gbac=NC_020147; trna=trnM; taxid=1267209; distance=0; count=1; cluster=trnM_NC_020147; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggttagaggatcgctttcatacggcgatagtcattggttcgaatccaatagtag +gta +>trnM_NC_020259_127 gbac=NC_020259; trna=trnM; taxid=13813; distance=1; count=1; cluster=trnM_NC_020259; cluster_score=1.000000; cluster_center=True; +gcctacttaacttagtggttatagtatcgctttcatacggcgagagtcattggttcaaatccaatagtag +gtac +>trnM_NC_020321_204 gbac=NC_020321; trna=trnM; taxid=120273; distance=3; count=1; cluster=trnM_NC_020321; cluster_score=1.000000; cluster_center=True; +acccacttaactcagtggttagagtatcgctttcatacggcgagagtcattggttcaaatccaatagtag +aaa +>trnM_NC_020438_59 gbac=NC_020438; trna=trnM; taxid=33097; distance=1; count=2; cluster=trnM_NC_020438; cluster_score=1.000000; cluster_center=True; +tagcagggtagagcagtctggtagctcgtggggctcataatcctgaggtcgcaggttcaaatcctgcccc +tgccat +>trnM_NC_021109_190 gbac=NC_021109; trna=trnM; taxid=330485; distance=1; count=1; cluster=trnM_NC_021109; cluster_score=1.000000; cluster_center=True; +tcgcagggtagagcagtctggcagctcgtggggctcataatcctaaggtcgtaggttcaaatcctacccc +tgccat +>trnM_NC_021109_213 gbac=NC_021109; trna=trnM; taxid=330485; distance=1; count=1; cluster=trnM_NC_021109; cluster_score=1.000000; cluster_center=True; +tgcctgcttagctcagttggttagagcgtccgtttcataagctgattgtcactagttcaaatctagtagc +aggcat +>trnM_NC_021111_43 gbac=NC_021111; trna=trnM; taxid=161395; distance=0; count=2; cluster=trnM_NC_021111; cluster_score=1.000000; cluster_center=True; +acctacttaactcagcggttagagtattgctttcatacggcaggagtcgttggttcaaatccaatagtag +gta +>trnM_NC_021121_16 gbac=NC_021121; trna=trnM; taxid=1265925; distance=0; count=7; cluster=trnM_NC_021121; cluster_score=1.000000; cluster_center=True; +acctacttaactcagcggttagagtattgctttcatacggcaggagtcattggttcaaatccaatagtag +gta +>trnM_NC_021423_35 gbac=NC_021423; trna=trnM; taxid=4058; distance=0; count=3; cluster=trnM_NC_021423; cluster_score=1.000000; cluster_center=True; +acctacttaactcagcggttagagtattgctttcatacggcaagagtcattggttcaaatccaatagtag +gta +>trnM_NC_021432_20 gbac=NC_021432; trna=trnM; taxid=160538; distance=1; count=5; cluster=trnM_NC_021432; cluster_score=1.000000; cluster_center=True; +acctacttaacccagtggttagagtattgctttcatacggcaggagtcattggttcaaatccaatagtag +gta +>trnM_NC_021433_4 gbac=NC_021433; trna=trnM; taxid=1324860; distance=1; count=31; cluster=trnM_NC_021433; cluster_score=1.000000; cluster_center=True; +acctacttaacccagtggttagagtattgctttcatacggcgggagtcattggttcaaatccaatagtag +gta +>trnM_NC_021456_38 gbac=NC_021456; trna=trnM; taxid=3329; distance=0; count=3; cluster=trnM_NC_021456; cluster_score=1.000000; cluster_center=True; +acccacttaactcagtggttagagtatcgctttcatacggcgagagtcgttggttcaaatccaatagtag +gta +>trnM_NC_021936_100 gbac=NC_021936; trna=trnM; taxid=29650; distance=1; count=1; cluster=trnM_NC_021936; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagaggttagagtattgctttcatacggcgagagtcattggttcaaatccaatagtag +gta +>trnM_NC_022431_21 gbac=NC_022431; trna=trnM; taxid=528293; distance=0; count=5; cluster=trnM_NC_022431; cluster_score=1.000000; cluster_center=True; +acctacttaactcagcggttagagtattgctttcatacggcgagagtcattggttcaaatccaatagtag +gta +>trnM_NC_022928_27 gbac=NC_022928; trna=trnM; taxid=136219; distance=0; count=3; cluster=trnM_NC_022928; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtattgctttcatacggcggtagtcattggttcaaatccaatagtag +gta +>trnM_NC_022958_217 gbac=NC_022958; trna=trnM; taxid=29695; distance=3; count=1; cluster=trnM_NC_022958; cluster_score=1.000000; cluster_center=True; +ttgctacttaactcagtggttagagtactgctttcatacggcgggagtcattggttcaaatccaatagta +ggtag +>trnM_NC_023115_133 gbac=NC_023115; trna=trnM; taxid=86091; distance=0; count=1; cluster=trnM_NC_023115; cluster_score=1.000000; cluster_center=True; +acctacttaactcagcggttagagtattgctttcatacggcagaagtcattggttcaaatccaatagtag +gta +>trnM_NC_023131_220 gbac=NC_023131; trna=trnM; taxid=4179; distance=0; count=1; cluster=trnM_NC_023131; cluster_score=1.000000; cluster_center=True; +acctatttaactcagtggttagagtcttgctttcatatggcagaagtcattggttcaaatccaatagtag +gta +>trnM_NC_023132_117 gbac=NC_023132; trna=trnM; taxid=223125; distance=1; count=1; cluster=trnM_NC_023132; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggttagagtattgctttcatacggcagtagtcattggttcaaatccaatagtag +gta +>trnM_NC_023260_91 gbac=NC_023260; trna=trnM; taxid=253189; distance=0; count=1; cluster=trnM_NC_023260; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtatcgctttcatacggcgggagtcattggttcaagtccaatagtag +gta +>trnM_NC_023261_119 gbac=NC_023261; trna=trnM; taxid=73178; distance=0; count=1; cluster=trnM_NC_023261; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggttagagtattgctttcatacggcgggagtcgttggttcaaatccaatagtag +gca +>trnM_NC_023357_15 gbac=NC_023357; trna=trnM; taxid=39848; distance=0; count=7; cluster=trnM_NC_023357; cluster_score=1.000000; cluster_center=True; +acctacttaactcagcggttagagtatcgctttcatacggcgggagtcattggttcaaatccaatagtag +gta +>trnM_NC_023465_120 gbac=NC_023465; trna=trnM; taxid=46066; distance=0; count=1; cluster=trnM_NC_023465; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggttagagtattgctttcatacggcggtagtcattggttcaaatccaatagtag +gta +>trnM_NC_023775_128 gbac=NC_023775; trna=trnM; taxid=3075; distance=0; count=1; cluster=trnM_NC_023775; cluster_score=1.000000; cluster_center=True; +gcctacttagctcagctggttagagcatccgtctcatacgcggaatgtcactggttcaaatccagtagta +ggcac +>trnM_NC_023959_233 gbac=NC_023959; trna=trnM; taxid=744259; distance=1; count=1; cluster=trnM_NC_023959; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtattgctttcatacggcgggagtcgttggttcaaatccaatagtag +gta +>trnM_NC_024106_1 gbac=NC_024106; trna=trnM; taxid=1243775; distance=1; count=53; cluster=trnM_NC_024106; cluster_score=1.000000; cluster_center=True; +tgcctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaatccaatagta +ggtag +>trnM_NC_024153_36 gbac=NC_024153; trna=trnM; taxid=13824; distance=0; count=3; cluster=trnM_NC_024153; cluster_score=1.000000; cluster_center=True; +gcctacttgactcagcggttagagtatcgctttcatacggcgagagtcattggttcgaatccaatagtag +gta +>trnM_NC_024158_125 gbac=NC_024158; trna=trnM; taxid=397682; distance=0; count=1; cluster=trnM_NC_024158; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggttggagtatcgctttcatacggcgagagtcattggttcgaatccaatagtag +gta +>trnM_NC_024168_122 gbac=NC_024168; trna=trnM; taxid=43943; distance=0; count=1; cluster=trnM_NC_024168; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggttagagtgtcgctttcatacggcgagagtcattggttcaagtccaatagtag +gca +>trnM_NC_024169_105 gbac=NC_024169; trna=trnM; taxid=184485; distance=0; count=1; cluster=trnM_NC_024169; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagcggttagagtgtcgctttcatacggcgaaagtcattggttcaagtccaatagtag +gca +>trnM_NC_024170_78 gbac=NC_024170; trna=trnM; taxid=55577; distance=1; count=1; cluster=trnM_NC_024170; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtattgctttcatacggcagaagtcattggttcaaatccaatagtag +gtac +>trnM_NC_024291_123 gbac=NC_024291; trna=trnM; taxid=37420; distance=1; count=1; cluster=trnM_NC_024291; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggttcagagtatcgctttcatacggcgagagtcattggttcaaatccaatagta +ggca +>trnM_NC_024735_19 gbac=NC_024735; trna=trnM; taxid=73824; distance=1; count=5; cluster=trnM_NC_024735; cluster_score=1.000000; cluster_center=True; +tacctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaatccaatagta +ggtat +>trnM_NC_024813_45 gbac=NC_024813; trna=trnM; taxid=4679; distance=1; count=2; cluster=trnM_NC_024813; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtattgctttcatacggcggaagtcattggttcaaatccaatagtag +gta +>trnM_NC_024828_151 gbac=NC_024828; trna=trnM; taxid=88271; distance=0; count=1; cluster=trnM_NC_024828; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagttggttagagcacccgtctcatacgcgggttgtcactagttcaaatctagtagca +ggca +>trnM_NC_024829_146 gbac=NC_024829; trna=trnM; taxid=259378; distance=0; count=1; cluster=trnM_NC_024829; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagttggccagagcatccgtctcatacgcggatcgtcactagttcgaatctagtagca +ggca +>trnM_NC_024845_152 gbac=NC_024845; trna=trnM; taxid=223102; distance=1; count=1; cluster=trnM_NC_024845; cluster_score=1.000000; cluster_center=True; +acctacttaactcaatggttagagtattgctttcatacggcgggagtcattggttcaaatccaatagtag +gta +>trnM_NC_025230_14 gbac=NC_025230; trna=trnM; taxid=58215; distance=1; count=7; cluster=trnM_NC_025230; cluster_score=1.000000; cluster_center=True; +tgcctacttaactcagtggttagagtactgctttcatacggcgggagtcattggttcaaatccaatagta +ggtag +>trnM_NC_025233_111 gbac=NC_025233; trna=trnM; taxid=1056921; distance=0; count=1; cluster=trnM_NC_025233; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggttagagtactgctttcatacggcgggagtcattggttcaaatccaatagtag +gta +>trnM_NC_025524_214 gbac=NC_025524; trna=trnM; taxid=40981; distance=1; count=1; cluster=trnM_NC_025524; cluster_score=1.000000; cluster_center=True; +tgcctgtttagctcagttggttagagcatccgcttcatacgcggattgtcactagttcaaatctagtaac +aggtag +>trnM_NC_025524_89 gbac=NC_025524; trna=trnM; taxid=40981; distance=0; count=1; cluster=trnM_NC_025524; cluster_score=1.000000; cluster_center=True; +tgcgggatagagcagtctggcagctcgcaaggctcataatcttgaggtcgtgggttcgaatcctactccc +gcta +>trnM_NC_025525_205 gbac=NC_025525; trna=trnM; taxid=415195; distance=1; count=1; cluster=trnM_NC_025525; cluster_score=1.000000; cluster_center=True; +tgcctacttagctcagtggtagagcgtccgtctcatacgcggaacgtcactagttcaaatctagtagtag +gcaa +>trnM_NC_025526_163 gbac=NC_025526; trna=trnM; taxid=191674; distance=0; count=1; cluster=trnM_NC_025526; cluster_score=1.000000; cluster_center=True; +gcctgtttagctcagttggttagagcatccgtctcatacgcggaatgtcactagttcaaatctagtagca +ggca +>trnM_NC_025526_209 gbac=NC_025526; trna=trnM; taxid=191674; distance=1; count=1; cluster=trnM_NC_025526; cluster_score=1.000000; cluster_center=True; +ttgcgggatagagcagtctggtagctcgcgaggctcataaccttgaggtcgcaggttcaaatcctgctcc +cgctaa +>trnM_NC_025527_167 gbac=NC_025527; trna=trnM; taxid=37433; distance=0; count=1; cluster=trnM_NC_025527; cluster_score=1.000000; cluster_center=True; +ggcggggtagagcagtctggtagctcgtgaggctcataatcttaaagtcgcaggttcaaatccggctccc +gcta +>trnM_NC_025528_130 gbac=NC_025528; trna=trnM; taxid=3083; distance=0; count=1; cluster=trnM_NC_025528; cluster_score=1.000000; cluster_center=True; +gcctacttagctcagttggtagagcatccgtctcatacgcggattgtcactagttcaaatctagtagtag +gca +>trnM_NC_025528_211 gbac=NC_025528; trna=trnM; taxid=3083; distance=1; count=1; cluster=trnM_NC_025528; cluster_score=1.000000; cluster_center=True; +ttgcgggatagagcagtctggtagctcgtgaggctcataatcttaaggtcgcaggttcgaatcctgctcc +cgctat +>trnM_NC_025529_64 gbac=NC_025529; trna=trnM; taxid=173497; distance=0; count=1; cluster=trnM_NC_025529; cluster_score=1.000000; cluster_center=True; +cgcgggatagagcagcctggtagctcgcaaggctcataatcttgaggtcgcaggttcgaatcctgctccc +gcta +>trnM_NC_025530_235 gbac=NC_025530; trna=trnM; taxid=160064; distance=0; count=1; cluster=trnM_NC_025530; cluster_score=1.000000; cluster_center=True; +cgcgggatagagcagcctggtagctcgcaaggctcataatcttgaggtcgtaggttcgaatcctactccc +gcta +>trnM_NC_025530_55 gbac=NC_025530; trna=trnM; taxid=160064; distance=0; count=2; cluster=trnM_NC_025530; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagttggctagagcatccgtctcatacgcggattgtcactagttcgaatctagtagca +ggca +>trnM_NC_025531_218 gbac=NC_025531; trna=trnM; taxid=33092; distance=0; count=1; cluster=trnM_NC_025531; cluster_score=1.000000; cluster_center=True; +tgcgggatagagcagcctggtagctcgcaaggctcataatcttgaggtcgtaggttcgaatcctgctccc +gcta +>trnM_NC_025531_52 gbac=NC_025531; trna=trnM; taxid=33092; distance=0; count=2; cluster=trnM_NC_025531; cluster_score=1.000000; cluster_center=True; +gcctacttagctcagttggtagagcatccgtctcatacgcggatcgtcactagttcaagtctagtagtag +gca +>trnM_NC_025533_210 gbac=NC_025533; trna=trnM; taxid=312850; distance=1; count=1; cluster=trnM_NC_025533; cluster_score=1.000000; cluster_center=True; +tgcctgcttagctcagttggttagagcatccgtctcatacgcggaatgtcactagttcaaatctagtagc +aggcaa +>trnM_NC_025533_231 gbac=NC_025533; trna=trnM; taxid=312850; distance=0; count=1; cluster=trnM_NC_025533; cluster_score=1.000000; cluster_center=True; +cgcgagatagagcagtctggtagctcgcaaggctcataatcttgaggtcgcaggttcgaatcctgctctc +gcaa +>trnM_NC_025534_140 gbac=NC_025534; trna=trnM; taxid=480381; distance=0; count=1; cluster=trnM_NC_025534; cluster_score=1.000000; cluster_center=True; +tgcgggatagagcagtctggtagctcgcagggctcataatcctgaggtcataggttcaaatcctattccc +gcta +>trnM_NC_025534_154 gbac=NC_025534; trna=trnM; taxid=480381; distance=0; count=1; cluster=trnM_NC_025534; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagttggttagagcatccgtctcatacgcggaatgtcactagttcaagtctagtagca +ggca +>trnM_NC_025535_207 gbac=NC_025535; trna=trnM; taxid=1065496; distance=1; count=1; cluster=trnM_NC_025535; cluster_score=1.000000; cluster_center=True; +tgcctgcttagctcagctggttagagcatccgtctcatacgcggaatgtcactagttcaaatctagtagc +aggcaa +>trnM_NC_025535_92 gbac=NC_025535; trna=trnM; taxid=1065496; distance=0; count=1; cluster=trnM_NC_025535; cluster_score=1.000000; cluster_center=True; +tgcgggatagagcagtctggtagctcgcaaggctcataatcttgaggtcgcaggttcaaatcctgctccc +gcta +>trnM_NC_025536_54 gbac=NC_025536; trna=trnM; taxid=155904; distance=0; count=2; cluster=trnM_NC_025536; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagctggttagagcgtccgtctcatacgcggattgtcactagttcaaatctagtagca +ggca +>trnM_NC_025536_93 gbac=NC_025536; trna=trnM; taxid=155904; distance=0; count=1; cluster=trnM_NC_025536; cluster_score=1.000000; cluster_center=True; +tgcgggatagagcagtctggtagctcgcaaggctcataatcttgaggtcgcaggttcgaatcctgctccc +gcta +>trnM_NC_025537_161 gbac=NC_025537; trna=trnM; taxid=34148; distance=0; count=1; cluster=trnM_NC_025537; cluster_score=1.000000; cluster_center=True; +gcctgcttatctcagttggttagagaatccgtttcatacgcggaatgtcactagttcaaatctagtagca +ggca +>trnM_NC_025539_192 gbac=NC_025539; trna=trnM; taxid=41300; distance=1; count=1; cluster=trnM_NC_025539; cluster_score=1.000000; cluster_center=True; +tcgcgggatagagcagcctggtagctcgcaaggctcataatcttgaggtcgtaggttcgaatcctactcc +cgccaa +>trnM_NC_025540_61 gbac=NC_025540; trna=trnM; taxid=249350; distance=1; count=2; cluster=trnM_NC_025540; cluster_score=1.000000; cluster_center=True; +tgcctgcttagctcagttggttagagcatccgtctcatacgcggattgtcactagttcaaatctagtagc +aggcag +>trnM_NC_025541_185 gbac=NC_025541; trna=trnM; taxid=415190; distance=1; count=1; cluster=trnM_NC_025541; cluster_score=1.000000; cluster_center=True; +ttgcgggatagagcagtctggtagctcgcaaggctcataatcttgaggtcgcaggttcgaatcctgttcc +cgctat +>trnM_NC_025541_53 gbac=NC_025541; trna=trnM; taxid=415190; distance=0; count=2; cluster=trnM_NC_025541; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagctggttagagcatccgtctcatacgcggattgtcactagttcaaatctagtagca +ggca +>trnM_NC_025542_17 gbac=NC_025542; trna=trnM; taxid=163310; distance=0; count=6; cluster=trnM_NC_025542; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagttggttagagcatccgtctcatacgcggaatgtcactagttcaaatctagtagca +ggca +>trnM_NC_025542_25 gbac=NC_025542; trna=trnM; taxid=163310; distance=1; count=3; cluster=trnM_NC_025542; cluster_score=1.000000; cluster_center=True; +ttgcgggatagagcagcctggtagctcgcaaggctcataatcttgaggtcgtaggttcgaatcctgctcc +cgctat +>trnM_NC_025543_142 gbac=NC_025543; trna=trnM; taxid=106203; distance=1; count=1; cluster=trnM_NC_025543; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagctggttagagcatccgtctcatacgcgggatgtcactagttcaaatctagtagca +ggcac +>trnM_NC_025543_63 gbac=NC_025543; trna=trnM; taxid=106203; distance=0; count=2; cluster=trnM_NC_025543; cluster_score=1.000000; cluster_center=True; +tgcgggatagagcagcttggtagctcgcaaggctcataatcttgaggtcgcaggttcgaatcctgctccc +gcta +>trnM_NC_025545_141 gbac=NC_025545; trna=trnM; taxid=38881; distance=0; count=1; cluster=trnM_NC_025545; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagctggttagagcatccgtctcatacgcgggatgtcactagttcaaatctagtagca +ggca +>trnM_NC_025545_234 gbac=NC_025545; trna=trnM; taxid=38881; distance=0; count=1; cluster=trnM_NC_025545; cluster_score=1.000000; cluster_center=True; +cgcgggatagagcagcctggtagctcgcaaggctcataaccttgaggtcgtaggttcgaatcctgctccc +gcta +>trnM_NC_025546_33 gbac=NC_025546; trna=trnM; taxid=91190; distance=0; count=3; cluster=trnM_NC_025546; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagttggtcagagcgtccgtctcatacgcggaatgtcactagttcaaatctagtagca +ggca +>trnM_NC_025547_153 gbac=NC_025547; trna=trnM; taxid=1418016; distance=3; count=1; cluster=trnM_NC_025547; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagttggttagagcatccgtctcatacgcggaatgtcactagttcaaatctagtagca +ggcacca +>trnM_NC_025547_221 gbac=NC_025547; trna=trnM; taxid=1418016; distance=1; count=1; cluster=trnM_NC_025547; cluster_score=1.000000; cluster_center=True; +agcggagtagagcagcctggcagctcgttaggctcataacctaaaggtcgtaggttcgaatcctacctcc +gctcc +>trnM_NC_025548_129 gbac=NC_025548; trna=trnM; taxid=381761; distance=0; count=1; cluster=trnM_NC_025548; cluster_score=1.000000; cluster_center=True; +tgcgggatagagcagtctggtagctcgcaaggctcataatcttgaggtcgtaggttcgaatcctgctccc +gcta +>trnM_NC_025548_156 gbac=NC_025548; trna=trnM; taxid=381761; distance=0; count=1; cluster=trnM_NC_025548; cluster_score=1.000000; cluster_center=True; +gcctgcttagctcagttggttagagcatccgtctcatacgcgggttgtcactagttcaaatctagtagca +ggca +>trnM_NC_025549_206 gbac=NC_025549; trna=trnM; taxid=97105; distance=1; count=1; cluster=trnM_NC_025549; cluster_score=1.000000; cluster_center=True; +tgcctgcgtagctcagttggttagagcgtccgtctcatacgcggaatgtcactagttcgaatctagtcgc +aggcaa +>trnM_NC_025549_225 gbac=NC_025549; trna=trnM; taxid=97105; distance=0; count=1; cluster=trnM_NC_025549; cluster_score=1.000000; cluster_center=True; +agcggagtagagcagtctggtagctcgtaaggctcataaccttaaggtcgtaggttcgaatcctacctcc +gctc +>trnM_NC_025641_228 gbac=NC_025641; trna=trnM; taxid=1407619; distance=0; count=1; cluster=trnM_NC_025641; cluster_score=1.000000; cluster_center=True; +atctacttaactcagtggttagagtattgctttcatacggcaagagtcattggttcaaatccaatagtag +gta +>trnM_NC_025651_121 gbac=NC_025651; trna=trnM; taxid=271221; distance=0; count=1; cluster=trnM_NC_025651; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggttagagtattgctttcatacggtgggagtcattggttcaaatccaatagtag +gta +>trnM_NC_025652_82 gbac=NC_025652; trna=trnM; taxid=204340; distance=1; count=1; cluster=trnM_NC_025652; cluster_score=1.000000; cluster_center=True; +gacctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaatccaatagta +ggtct +>trnM_NC_025657_103 gbac=NC_025657; trna=trnM; taxid=351450; distance=0; count=1; cluster=trnM_NC_025657; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagcggttagagtattgctttcatacggcgagagtcattggttcaaatccaatagtag +gta +>trnM_NC_025659_24 gbac=NC_025659; trna=trnM; taxid=459585; distance=1; count=3; cluster=trnM_NC_025659; cluster_score=1.000000; cluster_center=True; +acctacttaacccagtggttagagtattgctttcatacggcgggagtcgttggttcaaatccaatagtag +gta +>trnM_NC_025906_104 gbac=NC_025906; trna=trnM; taxid=337368; distance=1; count=1; cluster=trnM_NC_025906; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagcggttagagtattgctttcatacggcgggagtcattggttcaaatccaatagtag +gta +>trnM_NC_025907_23 gbac=NC_025907; trna=trnM; taxid=337380; distance=0; count=4; cluster=trnM_NC_025907; cluster_score=1.000000; cluster_center=True; +gcctacttaactcaggggttagagtattgctttcatacggcgggagtcgttggttcaaatccaacagtag +gta +>trnM_NC_026202_109 gbac=NC_026202; trna=trnM; taxid=692148; distance=1; count=1; cluster=trnM_NC_026202; cluster_score=1.000000; cluster_center=True; +gcctacttaactcagtggtagagtattgctttcatacggcaggagtcattggttcaaatccaatagtagg +ta +>trnM_NC_026220_180 gbac=NC_026220; trna=trnM; taxid=4615; distance=1; count=1; cluster=trnM_NC_026220; cluster_score=1.000000; cluster_center=True; +tacctacttaactcagtggttagagtattgctttcatacggcaggagtcattggttcaaatccaatagta +ggtag +>trnM_NC_026296_90 gbac=NC_026296; trna=trnM; taxid=13469; distance=0; count=1; cluster=trnM_NC_026296; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtatcgttttcatacggcgagagtcattggttcaaatccaatagtag +gta +>trnM_NC_026301_108 gbac=NC_026301; trna=trnM; taxid=3382; distance=0; count=1; cluster=trnM_NC_026301; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtatcgctttcatacggcgagagtcattggttcaagtccaatagtag +gta +>trnM_NC_026446_2 gbac=NC_026446; trna=trnM; taxid=352370; distance=0; count=39; cluster=trnM_NC_026446; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtattgctttcatacggcaggagtcattggttcaaatccaatagtag +gta +>trnM_NC_026450_40 gbac=NC_026450; trna=trnM; taxid=34341; distance=0; count=2; cluster=trnM_NC_026450; cluster_score=1.000000; cluster_center=True; +acccacttaactcagtggttagagtgtcgctttcatacggcgagagtcattggttcaaatccaatagtag +gta +>trnM_NC_026541_178 gbac=NC_026541; trna=trnM; taxid=125431; distance=1; count=1; cluster=trnM_NC_026541; cluster_score=1.000000; cluster_center=True; +tacctacttaacccagtggttagagtattgctttcatatggcgggagtcattggttcaaatccaatagta +ggtag +>trnM_NC_026563_5 gbac=NC_026563; trna=trnM; taxid=362346; distance=0; count=25; cluster=trnM_NC_026563; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtactgctttcatacggcgggagtcattggttcaaatccaatagtag +gta +>trnM_NC_026565_30 gbac=NC_026565; trna=trnM; taxid=13007; distance=0; count=3; cluster=trnM_NC_026565; cluster_score=1.000000; cluster_center=True; +acctacttaacccagcggttagagtattgctttcatacggcaggagtcattggttcaaatccaatagtag +gta +>trnM_NC_026568_183 gbac=NC_026568; trna=trnM; taxid=1605147; distance=1; count=1; cluster=trnM_NC_026568; cluster_score=1.000000; cluster_center=True; +acctacttaacccagtggttagagtattgctttcatacggcggaagtcattggttcaaatccaatagtag +gta +>trnM_NC_026684_118 gbac=NC_026684; trna=trnM; taxid=35938; distance=0; count=1; cluster=trnM_NC_026684; cluster_score=1.000000; cluster_center=True; +acctacttaactcagtggttagagtatagctttcatacggctagagtcattggttcaaatccaatagtag +gta +>trnM_NC_026777_181 gbac=NC_026777; trna=trnM; taxid=125444; distance=1; count=1; cluster=trnM_NC_026777; cluster_score=1.000000; cluster_center=True; +acctacttaacccagtggttagagtattgctttcatatggcgggagtcattggttcaaatccaatagtag +gta +>trnM_NC_026795_136 gbac=NC_026795; trna=trnM; taxid=3130; distance=0; count=1; cluster=trnM_NC_026795; cluster_score=1.000000; cluster_center=True; +gcctatttagctcagatggttagagcattcgtctcatacgcggaaagtcactagttcgaatctagtaata +ggca +>trnM_NC_026795_194 gbac=NC_026795; trna=trnM; taxid=3130; distance=1; count=1; cluster=trnM_NC_026795; cluster_score=1.000000; cluster_center=True; +tcgcgggatagagcagtttggtagctcgcaaggctcataatcttgaggtcgtaggttcgaatcctactcc +cgctat +>trnM_NC_026892_7 gbac=NC_026892; trna=trnM; taxid=97170; distance=0; count=17; cluster=trnM_NC_026892; cluster_score=1.000000; cluster_center=True; +acccacttaactcagtggttagagtatcgctttcatacggcgagagtcattggttcaaatccaatagtag +gta +>trnfM_NC_003386_130 gbac=NC_003386; trna=trnfM; taxid=3240; distance=0; count=1; cluster=trnfM_NC_003386; cluster_score=1.000000; cluster_center=True; +cgcgggatagagcagcttggtagctcgtaaggctcataaccttgaggtcacgggttcaaatcccgtaccc +gcaa +>trnfM_NC_004543_133 gbac=NC_004543; trna=trnfM; taxid=48387; distance=0; count=1; cluster=trnfM_NC_004543; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcctggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcca +>trnfM_NC_004766_58 gbac=NC_004766; trna=trnfM; taxid=13818; distance=0; count=1; cluster=trnfM_NC_004766; cluster_score=1.000000; cluster_center=True; +cgcggggtggagcagcttggtagctcgcgaggctcataacctcgaggtcacgggttcaaatcccgtctcc +gcaa +>trnfM_NC_005087_78 gbac=NC_005087; trna=trnfM; taxid=3218; distance=1; count=1; cluster=trnfM_NC_005087; cluster_score=1.000000; cluster_center=True; +tcgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcatgggttcaaatcccgtctc +cgctaa +>trnfM_NC_006861_109 gbac=NC_006861; trna=trnfM; taxid=37429; distance=0; count=1; cluster=trnfM_NC_006861; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagcttggtagctcgcgaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcca +>trnfM_NC_008325_101 gbac=NC_008325; trna=trnfM; taxid=4039; distance=1; count=1; cluster=trnfM_NC_008325; cluster_score=1.000000; cluster_center=True; +agcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcaa +>trnfM_NC_008407_71 gbac=NC_008407; trna=trnfM; taxid=126431; distance=1; count=1; cluster=trnfM_NC_008407; cluster_score=1.000000; cluster_center=True; +gggcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacaggttcaaatcccgtctc +cgcact +>trnfM_NC_008454_37 gbac=NC_008454; trna=trnfM; taxid=4031; distance=2; count=2; cluster=trnfM_NC_008454; cluster_score=1.000000; cluster_center=True; +ggcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtcttc +gcaccc +>trnfM_NC_008454_65 gbac=NC_008454; trna=trnfM; taxid=4031; distance=0; count=1; cluster=trnfM_NC_008454; cluster_score=1.000000; cluster_center=True; +ggcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtcttc +gcac +>trnfM_NC_008796_7 gbac=NC_008796; trna=trnfM; taxid=334596; distance=0; count=16; cluster=trnfM_NC_008796; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcaa +>trnfM_NC_009259_102 gbac=NC_009259; trna=trnfM; taxid=3885; distance=3; count=1; cluster=trnfM_NC_009259; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcaacttggtagctcgcaaggctcataaccttgaagttacgggttcaaatcccgtctcc +gcaac +>trnfM_NC_009600_54 gbac=NC_009600; trna=trnfM; taxid=145286; distance=2; count=1; cluster=trnfM_NC_009600; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcaacc +>trnfM_NC_009601_45 gbac=NC_009601; trna=trnfM; taxid=145284; distance=0; count=2; cluster=trnfM_NC_009601; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggttacaggttcaaatcctgtctcc +gcaa +>trnfM_NC_009618_87 gbac=NC_009618; trna=trnfM; taxid=54799; distance=0; count=1; cluster=trnfM_NC_009618; cluster_score=1.000000; cluster_center=True; +tgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcca +>trnfM_NC_009766_13 gbac=NC_009766; trna=trnfM; taxid=4129; distance=1; count=6; cluster=trnfM_NC_009766; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacaggttcaaatcctgtctcc +gcaac +>trnfM_NC_009949_48 gbac=NC_009949; trna=trnfM; taxid=437280; distance=2; count=2; cluster=trnfM_NC_009949; cluster_score=1.000000; cluster_center=True; +agcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcaacc +>trnfM_NC_010358_15 gbac=NC_010358; trna=trnfM; taxid=3940; distance=2; count=5; cluster=trnfM_NC_010358; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagattggtagctcgcaaggctcataaccttgaggtcatgggttcgaatcccgtcccc +gcaccc +>trnfM_NC_010359_57 gbac=NC_010359; trna=trnfM; taxid=280810; distance=0; count=1; cluster=trnfM_NC_010359; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcggtttggtagctcgcaaggctcataaccttgaggtcataggttcgaatcctgtctcc +gcca +>trnfM_NC_010360_23 gbac=NC_010360; trna=trnfM; taxid=482428; distance=2; count=3; cluster=trnfM_NC_010360; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagattggtagctcgcaaggctcataaccttgaggtcatgggttcaaatcccgtcccc +gcaccc +>trnfM_NC_010433_143 gbac=NC_010433; trna=trnfM; taxid=3983; distance=1; count=1; cluster=trnfM_NC_010433; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaagtcacgggttcaaatcccgtctcc +gcaac +>trnfM_NC_010654_85 gbac=NC_010654; trna=trnfM; taxid=3377; distance=2; count=1; cluster=trnfM_NC_010654; cluster_score=1.000000; cluster_center=True; +tgcggagtagagtagtctggtagctcgcaaggctcatacccttgaggtcacgggttcaaatcccgtcttc +gcgt +>trnfM_NC_011152_83 gbac=NC_011152; trna=trnfM; taxid=3332; distance=0; count=1; cluster=trnfM_NC_011152; cluster_score=1.000000; cluster_center=True; +tgcggagtagagtagtctggtagctcgcaaggctcataaccttgaggtcacgggtcaaatcccgtctccg +cca +>trnfM_NC_011153_10 gbac=NC_011153; trna=trnfM; taxid=3339; distance=0; count=12; cluster=trnfM_NC_011153; cluster_score=1.000000; cluster_center=True; +tgcggagtagagtagtctggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcca +>trnfM_NC_011828_100 gbac=NC_011828; trna=trnfM; taxid=3900; distance=1; count=1; cluster=trnfM_NC_011828; cluster_score=1.000000; cluster_center=True; +agcggggtagagcagcttggtagctcgtaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcaac +>trnfM_NC_011930_81 gbac=NC_011930; trna=trnfM; taxid=3324; distance=0; count=1; cluster=trnfM_NC_011930; cluster_score=1.000000; cluster_center=True; +tgcggagtaaagtagtctggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcca +>trnfM_NC_011954_123 gbac=NC_011954; trna=trnfM; taxid=173280; distance=0; count=1; cluster=trnfM_NC_011954; cluster_score=1.000000; cluster_center=True; +cgcggagtagagtagcctggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcca +>trnfM_NC_012052_75 gbac=NC_012052; trna=trnfM; taxid=38588; distance=3; count=1; cluster=trnfM_NC_012052; cluster_score=1.000000; cluster_center=True; +tcgcggggtagagcagcctggtagctcgcaaggctcataaccttgaggtcatgggttcaaatcccgtctc +cgctaa +>trnfM_NC_012224_144 gbac=NC_012224; trna=trnfM; taxid=180498; distance=1; count=1; cluster=trnfM_NC_012224; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaagtcacgggttcaaatcctgtctcc +gcaac +>trnfM_NC_013843_29 gbac=NC_013843; trna=trnfM; taxid=157791; distance=1; count=3; cluster=trnfM_NC_013843; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcaacttggtagctcgcaaggctcataaccttgaggttacgggttcaaatcccgtctcc +gcaac +>trnfM_NC_014057_103 gbac=NC_014057; trna=trnfM; taxid=3888; distance=2; count=1; cluster=trnfM_NC_014057; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcaacttggtagctcgcaaggctcataaccttgaggttacgggttcaaatcccgtctcc +gcacc +>trnfM_NC_014062_97 gbac=NC_014062; trna=trnfM; taxid=38684; distance=2; count=1; cluster=trnfM_NC_014062; cluster_score=1.000000; cluster_center=True; +agcggagtagagcagtttggtagctcgcgaggctcataaccttgaggtcacgggttcgattcccgtctcc +gcta +>trnfM_NC_014063_68 gbac=NC_014063; trna=trnfM; taxid=3860; distance=2; count=1; cluster=trnfM_NC_014063; cluster_score=1.000000; cluster_center=True; +ggcggagtggagcaacttggtagctcgcaaggctcataaccttgaggttacgggttcaaatcctgtctcc +gcacc +>trnfM_NC_014569_121 gbac=NC_014569; trna=trnfM; taxid=28960; distance=1; count=1; cluster=trnfM_NC_014569; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagttcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcaac +>trnfM_NC_014569_137 gbac=NC_014569; trna=trnfM; taxid=28960; distance=1; count=1; cluster=trnfM_NC_014569; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtcccc +gcaac +>trnfM_NC_014569_69 gbac=NC_014569; trna=trnfM; taxid=28960; distance=1; count=1; cluster=trnfM_NC_014569; cluster_score=1.000000; cluster_center=True; +ggcggggtagagcagcttggtagctcgcaaggctcataacctcgaggtcacgggttcaaatcccgtcccc +gcaac +>trnfM_NC_014573_108 gbac=NC_014573; trna=trnfM; taxid=326026; distance=1; count=1; cluster=trnfM_NC_014573; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagcttggtagctcgcaaggctcatgaccttgaggtcacgggttcaaatcccgtcttc +gcaac +>trnfM_NC_014575_84 gbac=NC_014575; trna=trnfM; taxid=3322; distance=0; count=1; cluster=trnfM_NC_014575; cluster_score=1.000000; cluster_center=True; +tgcggagtagagtagtctggtagctcgcaaggctcataaccttgaggtcacgggttcgaatcctgtctcc +gcca +>trnfM_NC_014582_70 gbac=NC_014582; trna=trnfM; taxid=163694; distance=2; count=1; cluster=trnfM_NC_014582; cluster_score=1.000000; cluster_center=True; +ggcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtcccc +gcaacc +>trnfM_NC_014582_89 gbac=NC_014582; trna=trnfM; taxid=163694; distance=1; count=1; cluster=trnfM_NC_014582; cluster_score=1.000000; cluster_center=True; +tggcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtccc +cccaac +>trnfM_NC_014592_141 gbac=NC_014592; trna=trnfM; taxid=531291; distance=0; count=1; cluster=trnfM_NC_014592; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcttggtagctcgcgaggctcataacctcgaggtcacgggttcaaatcccgtctcc +gcaa +>trnfM_NC_014674_6 gbac=NC_014674; trna=trnfM; taxid=60419; distance=1; count=21; cluster=trnfM_NC_014674; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcaac +>trnfM_NC_014675_132 gbac=NC_014675; trna=trnfM; taxid=49763; distance=0; count=1; cluster=trnfM_NC_014675; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcctggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcca +>trnfM_NC_014699_73 gbac=NC_014699; trna=trnfM; taxid=3258; distance=1; count=1; cluster=trnfM_NC_014699; cluster_score=1.000000; cluster_center=True; +tagcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtccc +cgcaaa +>trnfM_NC_014874_120 gbac=NC_014874; trna=trnfM; taxid=112168; distance=0; count=1; cluster=trnfM_NC_014874; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtttcc +gcaac +>trnfM_NC_015083_22 gbac=NC_015083; trna=trnfM; taxid=337360; distance=1; count=4; cluster=trnfM_NC_015083; cluster_score=1.000000; cluster_center=True; +ggcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtcccc +gcaac +>trnfM_NC_015083_52 gbac=NC_015083; trna=trnfM; taxid=337360; distance=1; count=2; cluster=trnfM_NC_015083; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctac +gcaac +>trnfM_NC_015113_145 gbac=NC_015113; trna=trnfM; taxid=40888; distance=0; count=1; cluster=trnfM_NC_015113; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcaa +>trnfM_NC_015308_40 gbac=NC_015308; trna=trnfM; taxid=3981; distance=1; count=2; cluster=trnfM_NC_015308; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaagtcacgggttcaaatcccgtctcc +gcaac +>trnfM_NC_015402_142 gbac=NC_015402; trna=trnfM; taxid=70216; distance=1; count=1; cluster=trnfM_NC_015402; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagtctggtagctcgcaaggctcataaccttgaggtcataggttcgaatcctgtctcc +gccac +>trnfM_NC_015894_3 gbac=NC_015894; trna=trnfM; taxid=161126; distance=1; count=43; cluster=trnfM_NC_015894; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcaac +>trnfM_NC_015983_43 gbac=NC_015983; trna=trnfM; taxid=412675; distance=1; count=2; cluster=trnfM_NC_015983; cluster_score=1.000000; cluster_center=True; +tcgcggggtagagcagcttggtagctcgcaaggctcataaccttgaagtcacgggttcaaatcctgtctc +cgcaaa +>trnfM_NC_016063_39 gbac=NC_016063; trna=trnfM; taxid=50179; distance=1; count=2; cluster=trnfM_NC_016063; cluster_score=1.000000; cluster_center=True; +gggcggagtagagcagtttggtagctcgcaaggctcataaccttgaagtcacgggttcaaatcccgtctc +cgcaca +>trnfM_NC_016069_20 gbac=NC_016069; trna=trnfM; taxid=93926; distance=0; count=4; cluster=trnfM_NC_016069; cluster_score=1.000000; cluster_center=True; +tgcggagtagagtagtctggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcca +>trnfM_NC_016471_112 gbac=NC_016471; trna=trnfM; taxid=48534; distance=1; count=1; cluster=trnfM_NC_016471; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcacaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcaac +>trnfM_NC_016728_64 gbac=NC_016728; trna=trnfM; taxid=39899; distance=0; count=1; cluster=trnfM_NC_016728; cluster_score=1.000000; cluster_center=True; +ggcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcacaggttcaaatcctgtctcc +gcaa +>trnfM_NC_017006_139 gbac=NC_017006; trna=trnfM; taxid=996148; distance=0; count=1; cluster=trnfM_NC_017006; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcatgggttcaaatcccgtctcc +gcaa +>trnfM_NC_018767_135 gbac=NC_018767; trna=trnfM; taxid=538574; distance=1; count=1; cluster=trnfM_NC_018767; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcgtggtagctcgcaaggctcataacctggaggtcacgggttcaaatcccgtctcc +gcaac +>trnfM_NC_019601_9 gbac=NC_019601; trna=trnfM; taxid=101007; distance=1; count=12; cluster=trnfM_NC_019601; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcgtggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcaac +>trnfM_NC_019616_35 gbac=NC_019616; trna=trnfM; taxid=13750; distance=5; count=2; cluster=trnfM_NC_019616; cluster_score=1.000000; cluster_center=True; +cggggagtagagtagtctggtagctcgcaaggctcataaccttgaggtcgcgggttcaaatcccgcctcc +ccac +>trnfM_NC_020146_74 gbac=NC_020146; trna=trnfM; taxid=3262; distance=1; count=1; cluster=trnfM_NC_020146; cluster_score=1.000000; cluster_center=True; +tagcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctc +cgcaaa +>trnfM_NC_020147_55 gbac=NC_020147; trna=trnfM; taxid=1267209; distance=1; count=1; cluster=trnfM_NC_020147; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcatgggttcaaatcccttctcc +gcaa +>trnfM_NC_020259_134 gbac=NC_020259; trna=trnfM; taxid=13813; distance=0; count=1; cluster=trnfM_NC_020259; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcctggtagctcgcaaggctcataaccttgaggtcacgggttcgaatcctgtctcc +gcca +>trnfM_NC_020321_114 gbac=NC_020321; trna=trnfM; taxid=120273; distance=1; count=1; cluster=trnfM_NC_020321; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaagtcacgggttcaaatcccgtctcc +gcta +>trnfM_NC_020363_115 gbac=NC_020363; trna=trnfM; taxid=188518; distance=1; count=1; cluster=trnfM_NC_020363; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaagtcatgggttcaaatcctttctcc +gcaac +>trnfM_NC_020367_111 gbac=NC_020367; trna=trnfM; taxid=101696; distance=1; count=1; cluster=trnfM_NC_020367; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcacaaggctcataaccttgaggtcacaggttcaaatcctgtctcc +gcaac +>trnfM_NC_020607_14 gbac=NC_020607; trna=trnfM; taxid=395280; distance=0; count=6; cluster=trnfM_NC_020607; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacaggttcaaatcctgtctcc +gcaa +>trnfM_NC_021111_50 gbac=NC_021111; trna=trnfM; taxid=161395; distance=1; count=2; cluster=trnfM_NC_021111; cluster_score=1.000000; cluster_center=True; +tgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcaac +>trnfM_NC_021432_33 gbac=NC_021432; trna=trnfM; taxid=160538; distance=1; count=3; cluster=trnfM_NC_021432; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcaac +>trnfM_NC_021441_46 gbac=NC_021441; trna=trnfM; taxid=99815; distance=0; count=2; cluster=trnfM_NC_021441; cluster_score=1.000000; cluster_center=True; +agcggagtagagcagtctggtagctcgcaaggctcataaccttgaagtcacgggttcaaatcccgtctcc +gcgc +>trnfM_NC_021648_8 gbac=NC_021648; trna=trnfM; taxid=82538; distance=1; count=14; cluster=trnfM_NC_021648; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcaacttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcaac +>trnfM_NC_021936_129 gbac=NC_021936; trna=trnfM; taxid=29650; distance=4; count=1; cluster=trnfM_NC_021936; cluster_score=1.000000; cluster_center=True; +cgcggagttgagcagcctggcagctcgcaaggctcataaccttgaggtcacaggttcaaatcctgtctcc +gtgtc +>trnfM_NC_022431_51 gbac=NC_022431; trna=trnfM; taxid=528293; distance=1; count=2; cluster=trnfM_NC_022431; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtcccc +gcaac +>trnfM_NC_022457_116 gbac=NC_022457; trna=trnfM; taxid=13601; distance=0; count=1; cluster=trnfM_NC_022457; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacaggttcaaatcctgtctcc +gcaa +>trnfM_NC_022812_4 gbac=NC_022812; trna=trnfM; taxid=133946; distance=8; count=29; cluster=trnfM_NC_022812; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcaa +>trnfM_NC_022927_122 gbac=NC_022927; trna=trnfM; taxid=4664; distance=2; count=1; cluster=trnfM_NC_022927; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggttagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctc +cgcacc +>trnfM_NC_023090_34 gbac=NC_023090; trna=trnfM; taxid=3873; distance=1; count=2; cluster=trnfM_NC_023090; cluster_score=1.000000; cluster_center=True; +tcgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctc +cgcaag +>trnfM_NC_023115_119 gbac=NC_023115; trna=trnfM; taxid=86091; distance=1; count=1; cluster=trnfM_NC_023115; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcacc +>trnfM_NC_023119_90 gbac=NC_023119; trna=trnfM; taxid=60851; distance=1; count=1; cluster=trnfM_NC_023119; cluster_score=1.000000; cluster_center=True; +ttgcggagtagagcagcttggtagctcgcgaggctcataaccttgaggtcacgggttcaaatcccgtctc +cgctag +>trnfM_NC_023121_44 gbac=NC_023121; trna=trnfM; taxid=54798; distance=0; count=2; cluster=trnfM_NC_023121; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaagtcacgggttcaaatcccgtctcc +gcaa +>trnfM_NC_023131_56 gbac=NC_023131; trna=trnfM; taxid=4179; distance=0; count=1; cluster=trnfM_NC_023131; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcatgggttcaaatcctgtcttc +gcaa +>trnfM_NC_023132_127 gbac=NC_023132; trna=trnfM; taxid=223125; distance=0; count=1; cluster=trnfM_NC_023132; cluster_score=1.000000; cluster_center=True; +cgcggagtagagtagtttggtatctcgcaaggctcataaccttgagatcgcaggttcaaatcctgtctcc +gcaa +>trnfM_NC_023217_5 gbac=NC_023217; trna=trnfM; taxid=47602; distance=1; count=22; cluster=trnfM_NC_023217; cluster_score=1.000000; cluster_center=True; +cgcgggatagagcagtttggtagctcgcaaggctcataaccttgaggtcatgggttcaaatcccgttccc +gcaac +>trnfM_NC_023247_16 gbac=NC_023247; trna=trnfM; taxid=152093; distance=1; count=5; cluster=trnfM_NC_023247; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcgcaggttcaaatcctgtctcc +gcaac +>trnfM_NC_023259_76 gbac=NC_023259; trna=trnfM; taxid=28971; distance=1; count=1; cluster=trnfM_NC_023259; cluster_score=1.000000; cluster_center=True; +tcgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtccc +cgcaat +>trnfM_NC_023260_42 gbac=NC_023260; trna=trnfM; taxid=253189; distance=2; count=2; cluster=trnfM_NC_023260; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcgcgggttcaaatcccgtctcc +gcacc +>trnfM_NC_023261_82 gbac=NC_023261; trna=trnfM; taxid=73178; distance=2; count=1; cluster=trnfM_NC_023261; cluster_score=1.000000; cluster_center=True; +tgcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcgtgggttcaaatcccgtcttc +gcaacc +>trnfM_NC_023356_128 gbac=NC_023356; trna=trnfM; taxid=120072; distance=1; count=1; cluster=trnfM_NC_023356; cluster_score=1.000000; cluster_center=True; +cgcggagtggagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcaac +>trnfM_NC_023358_53 gbac=NC_023358; trna=trnfM; taxid=490730; distance=1; count=2; cluster=trnfM_NC_023358; cluster_score=1.000000; cluster_center=True; +ttgcggagtggagtagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctc +cgcaaa +>trnfM_NC_023360_26 gbac=NC_023360; trna=trnfM; taxid=129946; distance=0; count=3; cluster=trnfM_NC_023360; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacaggttcaaatcctgtctcc +gcaa +>trnfM_NC_023464_125 gbac=NC_023464; trna=trnfM; taxid=223107; distance=1; count=1; cluster=trnfM_NC_023464; cluster_score=1.000000; cluster_center=True; +cgcggagtagagtagtttggtagctcgcaaggctcataaccttgagatcacaggttcaaatcctgtctcc +gcaac +>trnfM_NC_023465_124 gbac=NC_023465; trna=trnfM; taxid=46066; distance=0; count=1; cluster=trnfM_NC_023465; cluster_score=1.000000; cluster_center=True; +cgcggagtagagtagtttggtagctcacaaggctcataaccttgaggtcgcaggttcaaatcctgtctcc +gcaa +>trnfM_NC_023790_38 gbac=NC_023790; trna=trnfM; taxid=103349; distance=1; count=2; cluster=trnfM_NC_023790; cluster_score=1.000000; cluster_center=True; +ggcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcaa +>trnfM_NC_023792_17 gbac=NC_023792; trna=trnfM; taxid=124943; distance=1; count=4; cluster=trnfM_NC_023792; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcaac +>trnfM_NC_023805_27 gbac=NC_023805; trna=trnfM; taxid=1030197; distance=0; count=3; cluster=trnfM_NC_023805; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaagtcacgggttcaaatcccgtctcc +gcta +>trnfM_NC_024023_18 gbac=NC_024023; trna=trnfM; taxid=466205; distance=0; count=4; cluster=trnfM_NC_024023; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaagtcatgggttcaaatcccatctcc +gcaa +>trnfM_NC_024035_28 gbac=NC_024035; trna=trnfM; taxid=361561; distance=1; count=3; cluster=trnfM_NC_024035; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcaacttggtagctcacaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcaac +>trnfM_NC_024036_104 gbac=NC_024036; trna=trnfM; taxid=3899; distance=1; count=1; cluster=trnfM_NC_024036; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcaacttggtagctcgtaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcaac +>trnfM_NC_024061_11 gbac=NC_024061; trna=trnfM; taxid=22978; distance=1; count=10; cluster=trnfM_NC_024061; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcaac +>trnfM_NC_024166_99 gbac=NC_024166; trna=trnfM; taxid=361940; distance=1; count=1; cluster=trnfM_NC_024166; cluster_score=1.000000; cluster_center=True; +agcggggtagagcagcttggtagctcgtaaggctcataaccttgaggtcacgggttcaaatcccgtcccc +gcaac +>trnfM_NC_024167_72 gbac=NC_024167; trna=trnfM; taxid=3175; distance=2; count=1; cluster=trnfM_NC_024167; cluster_score=1.000000; cluster_center=True; +tagcggagtagagcaactaggtagctcgcaaggctcataaccttgaggttacaggttcaaatcctgtctc +cgccaa +>trnfM_NC_024168_63 gbac=NC_024168; trna=trnfM; taxid=43943; distance=1; count=1; cluster=trnfM_NC_024168; cluster_score=1.000000; cluster_center=True; +ggcggagtagagcagcctggtagctcgcaaggctcataaccttgaggtcgcacgttcaaatcatgcctcc +gccc +>trnfM_NC_024169_67 gbac=NC_024169; trna=trnfM; taxid=184485; distance=1; count=1; cluster=trnfM_NC_024169; cluster_score=1.000000; cluster_center=True; +ggcggagtagagcagtctggtagctcgcaaggctcataaccttgaggtcgcacgttcaaatcatgcctcc +gccc +>trnfM_NC_024291_131 gbac=NC_024291; trna=trnfM; taxid=37420; distance=2; count=1; cluster=trnfM_NC_024291; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcctggtagctcgcaaggctcataaccttgaggccacgggttcaaatcccgtctcc +gcta +>trnfM_NC_024718_2 gbac=NC_024718; trna=trnfM; taxid=145987; distance=1; count=73; cluster=trnfM_NC_024718; cluster_score=1.000000; cluster_center=True; +gagcggagtagagcagtttggtagctcacgaggctcataaccttgaggtcacgggttcgattcccgtctc +cgcact +>trnfM_NC_024732_25 gbac=NC_024732; trna=trnfM; taxid=103032; distance=0; count=3; cluster=trnfM_NC_024732; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcaccggttcaaatccggtctcc +gcaa +>trnfM_NC_024845_126 gbac=NC_024845; trna=trnfM; taxid=223102; distance=1; count=1; cluster=trnfM_NC_024845; cluster_score=1.000000; cluster_center=True; +cgcggagtagagtagtttggtagctcgcaaggctcataaccttgaggtcacaggttcaaatcctgtctcc +gcaac +>trnfM_NC_024945_113 gbac=NC_024945; trna=trnfM; taxid=50176; distance=0; count=1; cluster=trnfM_NC_024945; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaagccacgggttcaaatcccgtctcc +gcaa +>trnfM_NC_025228_96 gbac=NC_025228; trna=trnfM; taxid=65970; distance=1; count=1; cluster=trnfM_NC_025228; cluster_score=1.000000; cluster_center=True; +agcggagtagagcagtttggtagctcacgaggctcataaccttgaggtcacgggttcgattcccgtctcc +gcacc +>trnfM_NC_025305_61 gbac=NC_025305; trna=trnfM; taxid=101708; distance=2; count=1; cluster=trnfM_NC_025305; cluster_score=1.000000; cluster_center=True; +gcgcggagtagagcagtttggtagctcgcaaggctcataatcttgaagtcgcgggttcgaatcccgtctc +cgcacgc +>trnfM_NC_025306_36 gbac=NC_025306; trna=trnfM; taxid=198697; distance=1; count=2; cluster=trnfM_NC_025306; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcatgggttcaaatcctgtctcc +gcaac +>trnfM_NC_025339_41 gbac=NC_025339; trna=trnfM; taxid=4432; distance=1; count=2; cluster=trnfM_NC_025339; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacaggttcaaatcctgtctcc +gcaac +>trnfM_NC_025641_79 gbac=NC_025641; trna=trnfM; taxid=1407619; distance=2; count=1; cluster=trnfM_NC_025641; cluster_score=1.000000; cluster_center=True; +tcgcggggtaggagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtct +tcgcaat +>trnfM_NC_025668_106 gbac=NC_025668; trna=trnfM; taxid=140003; distance=2; count=1; cluster=trnfM_NC_025668; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagcctggtagctcgcaaggctcataaccttgaggtcatgggttcaaatcctgtctcc +gcta +>trnfM_NC_025744_47 gbac=NC_025744; trna=trnfM; taxid=361918; distance=2; count=2; cluster=trnfM_NC_025744; cluster_score=1.000000; cluster_center=True; +agcggggtagagcaacttggtagctcgtaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcaacc +>trnfM_NC_025906_107 gbac=NC_025906; trna=trnfM; taxid=337368; distance=1; count=1; cluster=trnfM_NC_025906; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcgcgggttcaaatcccgtctcc +gcaac +>trnfM_NC_025906_62 gbac=NC_025906; trna=trnfM; taxid=337368; distance=1; count=1; cluster=trnfM_NC_025906; cluster_score=1.000000; cluster_center=True; +ggcgaggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtcccc +gcaac +>trnfM_NC_026040_21 gbac=NC_026040; trna=trnfM; taxid=42329; distance=0; count=4; cluster=trnfM_NC_026040; cluster_score=1.000000; cluster_center=True; +tgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gccg +>trnfM_NC_026041_88 gbac=NC_026041; trna=trnfM; taxid=34343; distance=0; count=1; cluster=trnfM_NC_026041; cluster_score=1.000000; cluster_center=True; +tgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcatgggttcaaatcccgtctcc +gctg +>trnfM_NC_026076_12 gbac=NC_026076; trna=trnfM; taxid=40716; distance=0; count=9; cluster=trnfM_NC_026076; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcaac +>trnfM_NC_026134_140 gbac=NC_026134; trna=trnfM; taxid=138025; distance=1; count=1; cluster=trnfM_NC_026134; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcttggtagctcgcaaggctcataatcttgaggtcacgggttcaaatcccgtctcc +gcaac +>trnfM_NC_026212_105 gbac=NC_026212; trna=trnfM; taxid=1592803; distance=2; count=1; cluster=trnfM_NC_026212; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagcctggtagctcgcaaggctcataaccttgaggtcatgggttcaaatcccgtctcc +gcta +>trnfM_NC_026291_1 gbac=NC_026291; trna=trnfM; taxid=54469; distance=1; count=88; cluster=trnfM_NC_026291; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcaac +>trnfM_NC_026298_19 gbac=NC_026298; trna=trnfM; taxid=257623; distance=1; count=4; cluster=trnfM_NC_026298; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaagtcatgggttcaaatcccgtctcc +gcaa +>trnfM_NC_026299_32 gbac=NC_026299; trna=trnfM; taxid=55184; distance=1; count=3; cluster=trnfM_NC_026299; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacaggttcaaatcctgtctcc +gcaac +>trnfM_NC_026301_31 gbac=NC_026301; trna=trnfM; taxid=3382; distance=0; count=3; cluster=trnfM_NC_026301; cluster_score=1.000000; cluster_center=True; +cgcggagtagagtagtctggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcta +>trnfM_NC_026450_91 gbac=NC_026450; trna=trnfM; taxid=34341; distance=1; count=1; cluster=trnfM_NC_026450; cluster_score=1.000000; cluster_center=True; +ttgcggggtagagcagcttggtagctcgcgaggctcataaccttgaggtcacgggttcaaatcccgtctc +cgctag +>trnfM_NC_026541_118 gbac=NC_026541; trna=trnfM; taxid=125431; distance=0; count=1; cluster=trnfM_NC_026541; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcctgtctcc +gcaa +>trnfM_NC_026562_138 gbac=NC_026562; trna=trnfM; taxid=3483; distance=0; count=1; cluster=trnfM_NC_026562; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcaa +>trnfM_NC_026680_30 gbac=NC_026680; trna=trnfM; taxid=198914; distance=1; count=3; cluster=trnfM_NC_026680; cluster_score=1.000000; cluster_center=True; +cgcggggtagagcaacttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcaac +>trnfM_NC_026685_77 gbac=NC_026685; trna=trnfM; taxid=58860; distance=1; count=1; cluster=trnfM_NC_026685; cluster_score=1.000000; cluster_center=True; +tcgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctc +cgcaaa +>trnfM_NC_026690_24 gbac=NC_026690; trna=trnfM; taxid=3625; distance=2; count=3; cluster=trnfM_NC_026690; cluster_score=1.000000; cluster_center=True; +ggcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacaggttcaaatcccgtctcc +gcacc +>trnfM_NC_026691_66 gbac=NC_026691; trna=trnfM; taxid=3627; distance=2; count=1; cluster=trnfM_NC_026691; cluster_score=1.000000; cluster_center=True; +ggcggagtagagcaggttggtagctcgcaaggctcataaccttgaggtcacaggttcaaatcccgtctcc +gcacc +>trnfM_NC_026778_110 gbac=NC_026778; trna=trnfM; taxid=51239; distance=1; count=1; cluster=trnfM_NC_026778; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtctggtagctcgcaaggctcataaccttgaggtcatgggttcaaatcccgtctcc +gcaac +>trnfM_NC_026839_117 gbac=NC_026839; trna=trnfM; taxid=105884; distance=0; count=1; cluster=trnfM_NC_026839; cluster_score=1.000000; cluster_center=True; +cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaatcccgtctcc +gcaa diff --git a/data/trna/CAU_tRNA_DB.log b/data/trna/CAU_tRNA_DB.log new file mode 100644 index 0000000..71e21ca --- /dev/null +++ b/data/trna/CAU_tRNA_DB.log @@ -0,0 +1,18 @@ +2015-10-10 18:52:35 [OA INFO ] 63859 -- Selecting Viridiplantae genebank entries... +2015-10-10 18:52:44 [OA INFO ] 63859 -- --> 695 entries selected +2015-10-10 18:52:44 [OA INFO ] 63859 -- Done +2015-10-10 18:52:44 [OA INFO ] 63859 -- Extracting the CAU tRNA from the plants entries... +2015-10-10 19:03:07 [OA INFO ] 63859 -- Done +2015-10-10 19:03:07 [OA INFO ] 63859 -- Sorting the CAU tRNA... +2015-10-10 19:03:07 [OA INFO ] 63859 -- Extract and dereplicate trnI... +2015-10-10 19:03:07 [OA INFO ] 63859 -- Extract and dereplicate trnM... +2015-10-10 19:03:07 [OA INFO ] 63859 -- Extract and dereplicate trnfM... +2015-10-10 19:03:07 [OA INFO ] 63859 -- Done +2015-10-10 19:03:07 [OA INFO ] 63859 -- Cleaning the CAU tRNA... +2015-10-10 19:03:07 [OA INFO ] 63859 -- First pass... +2015-10-10 19:03:09 [OA INFO ] 63859 -- --> 420 trnCAU.good.ids sequences kept +2015-10-10 19:03:09 [OA INFO ] 63859 -- Second pass... +2015-10-10 19:03:11 [OA INFO ] 63859 -- --> 419 trnCAU.good.ids sequences kept +2015-10-10 19:03:11 [OA INFO ] 63859 -- Done +2015-10-10 19:03:11 [OA INFO ] 63859 -- Installing the CAU tRNA database... +2015-10-10 19:03:11 [OA INFO ] 63859 -- Done diff --git a/data/trna/ncbi20150303.adx b/data/trna/ncbi20150303.adx deleted file mode 100644 index 8aaeba3..0000000 Binary files a/data/trna/ncbi20150303.adx and /dev/null differ diff --git a/data/trna/ncbi20150303.ndx.REMOVED.git-id b/data/trna/ncbi20150303.ndx.REMOVED.git-id deleted file mode 100644 index f023c0a..0000000 --- a/data/trna/ncbi20150303.ndx.REMOVED.git-id +++ /dev/null @@ -1 +0,0 @@ -0b9d49e3330cd8e6abe0c8b010e9931f7b2f22f3 \ No newline at end of file diff --git a/data/trna/ncbi20150303.rdx b/data/trna/ncbi20150303.rdx deleted file mode 100644 index 2eda8ab..0000000 Binary files a/data/trna/ncbi20150303.rdx and /dev/null differ diff --git a/data/trna/ncbi20150303.tdx.REMOVED.git-id b/data/trna/ncbi20150303.tdx.REMOVED.git-id deleted file mode 100644 index d24aa77..0000000 --- a/data/trna/ncbi20150303.tdx.REMOVED.git-id +++ /dev/null @@ -1 +0,0 @@ -87cabbb1913329a9e693acad81654beb01f0e9bc \ No newline at end of file diff --git a/data/trna/trnaCAU.ref.fasta b/data/trna/trnaCAU.ref.fasta deleted file mode 100644 index 343c8d5..0000000 --- a/data/trna/trnaCAU.ref.fasta +++ /dev/null @@ -1,1263 +0,0 @@ ->trnM count=1; merged_taxid={31312: 1}; species_name=Nephroselmis olivacea; family=-1; family_name=###; scientific_name=Nephroselmis olivacea; trna=trnM; gbac=NC_000927; taxid=31312; genus_name=Nephroselmis; rank=species; genus=31311; species=31312; distance=1; Nephroselmis olivacea chloroplast, complete genome. -gcctgcttagctcagttggttagagcgtccgtttcatacgcggattgtcactagttcaaa -tctagtagcaggcac ->trnfM count=1; merged_taxid={31312: 1}; species_name=Nephroselmis olivacea; family=-1; family_name=###; scientific_name=Nephroselmis olivacea; trna=trnfM; gbac=NC_000927; taxid=31312; genus_name=Nephroselmis; rank=species; genus=31311; species=31312; distance=0; Nephroselmis olivacea chloroplast, complete genome. -tgcggggtagagcagtctggtagctcgcagggctcataaccctgaagtcgtgggttcaaa -tcctacctccgcac ->trnI count=2; merged_taxid={31312: 2}; species_name=Nephroselmis olivacea; family=-1; distance=0; scientific_name=Nephroselmis olivacea; trna=trnI; gbac=NC_000927; taxid=31312; genus_name=Nephroselmis; family_name=###; rank=species; genus=31311; species=31312; Nephroselmis olivacea chloroplast, complete genome. -gcatccatagcctagcggttaaggcagtcgactcataatcggaatatcgctggttcgaat -ccagctggatgca ->trnfM count=88; merged_taxid={4096: 1, 4097: 1, 4098: 1, 542733: 1, 4113: 1, 4120: 1, 4121: 1, 182317: 1, 86093: 1, 175694: 1, 4182: 1, 126905: 1, 352370: 1, 3702: 1, 362345: 1, 105594: 1, 3708: 1, 13443: 1, 3719: 1, 452972: 1, 3726: 1, 396313: 2, 194713: 1, 144545: 1, 86722: 1, 54469: 1, 13006: 1, 351450: 1, 166117: 1, 1265925: 1, 50452: 1, 106773: 1, 1454364: 1, 141598: 1, 1454370: 1, 171822: 1, 4403: 1, 77108: 1, 4428: 1, 3406: 1, 114512: 1, 33113: 1, 4442: 1, 85856: 1, 362342: 1, 85864: 1, 85865: 1, 362346: 1, 385388: 1, 82286: 1, 78191: 1, 78192: 1, 271221: 1, 362363: 1, 362364: 1, 44926: 1, 362373: 1, 153490: 1, 65948: 1, 226208: 1, 142759: 1, 59292: 1, 62890: 1, 62891: 1, 41396: 1, 319925: 1, 126903: 1, 319928: 1, 118713: 1, 147918: 1, 1523625: 1, 315350: 1, 4058: 1, 1339356: 1, 74718: 1, 224735: 1, 147425: 1, 4072: 1, 4076: 1, 34301: 1, 4081: 1, 4082: 1, 4083: 1, 4084: 1, 63479: 1, 414717: 1, 542719: 1}; species_name=###; family=-1; distance=1; scientific_name=Magnoliophyta; trna=trnfM; taxid=3398; genus_name=###; family_name=###; rank=no rank; genus=-1; species=-1; Arabidopsis thaliana chloroplast, complete genome. -cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcaac ->trnM count=39; merged_taxid={97024: 1, 75712: 1, 226051: 1, 85636: 1, 3719: 1, 77065: 1, 91146: 1, 434059: 1, 3726: 1, 3860: 1, 106773: 1, 50458: 1, 65948: 1, 3880: 1, 59292: 1, 171822: 1, 3888: 1, 904691: 1, 1278906: 1, 3900: 1, 377280: 1, 97014: 1, 414717: 1, 72657: 1, 361940: 1, 361561: 1, 74718: 1, 3940: 1, 3942: 1, 3708: 1, 58860: 1, 82286: 1, 78191: 1, 78192: 1, 352370: 1, 3827: 1, 3702: 1, 482428: 1, 482429: 1}; species_name=###; family=-1; distance=0; scientific_name=Pentapetalae; trna=trnM; taxid=1437201; genus_name=###; family_name=###; rank=no rank; genus=-1; species=-1; Arabidopsis thaliana chloroplast, complete genome. -acctacttaactcagtggttagagtattgctttcatacggcaggagtcattggttcaaat -ccaatagtaggta ->trnI count=435; merged_taxid={4096: 2, 4097: 2, 4098: 2, 412675: 2, 1495044: 2, 47622: 2, 34305: 2, 91146: 2, 101015: 2, 337410: 1, 321550: 2, 124943: 2, 4113: 2, 47634: 2, 47635: 2, 47636: 2, 47637: 2, 396313: 4, 129566: 2, 29729: 2, 29730: 2, 248361: 2, 44586: 2, 3627: 2, 1125932: 2, 182317: 2, 192264: 2, 3634: 2, 3635: 2, 3636: 2, 3641: 2, 42043: 2, 103349: 2, 29760: 2, 3649: 2, 3659: 2, 86093: 2, 542733: 2, 3512: 2, 49684: 2, 167439: 2, 157791: 2, 73824: 2, 35938: 2, 4146: 2, 497767: 2, 82538: 2, 123495: 2, 3694: 2, 352370: 2, 161395: 2, 3702: 2, 45689: 2, 45690: 2, 96944: 2, 3708: 2, 377280: 2, 13443: 2, 3719: 2, 452972: 2, 3726: 2, 101007: 2, 2711: 2, 194713: 2, 101020: 2, 713886: 2, 54469: 2, 144545: 2, 329890: 2, 319928: 2, 1454364: 2, 158383: 2, 3760: 2, 158385: 2, 109171: 2, 3870: 2, 3767: 2, 229049: 2, 396994: 1, 38596: 2, 230597: 2, 87754: 2, 13748: 2, 23250: 2, 147918: 2, 137943: 2, 4312: 1, 351450: 2, 102107: 1, 715485: 2, 478946: 2, 166117: 2, 362364: 2, 490730: 2, 228393: 2, 4083: 2, 56065: 2, 198914: 2, 226051: 2, 1265925: 2, 3847: 2, 3848: 2, 77065: 2, 40716: 2, 204340: 2, 180498: 2, 50452: 2, 106773: 2, 76056: 2, 37657: 2, 50458: 2, 48924: 2, 141598: 2, 28960: 2, 3873: 2, 1454370: 2, 597284: 2, 102697: 2, 192300: 2, 3885: 1, 171822: 2, 472368: 1, 126905: 2, 133939: 2, 57655: 2, 159033: 2, 133946: 2, 597311: 2, 1308043: 2, 3625: 2, 147425: 2, 3914: 2, 3917: 2, 86091: 2, 71139: 2, 33113: 2, 103483: 2, 34278: 2, 362342: 2, 362345: 2, 362346: 2, 1186155: 2, 385388: 2, 519533: 2, 82286: 2, 78191: 2, 78192: 2, 34280: 2, 34284: 2, 20340: 2, 271221: 2, 362363: 2, 1186172: 2, 34282: 2, 63359: 2, 362373: 2, 58860: 2, 434059: 2, 3981: 2, 3983: 1, 153490: 2, 744259: 2, 3988: 2, 129946: 2, 692148: 1, 59292: 2, 295326: 2, 48545: 2, 3483: 2, 528293: 2, 142759: 2, 39848: 2, 65948: 2, 62890: 2, 64939: 2, 4082: 2, 39855: 2, 191923: 2, 41396: 2, 319925: 2, 75702: 2, 126903: 2, 40888: 2, 118713: 2, 1278906: 2, 62891: 2, 60419: 2, 22978: 2, 39875: 2, 75712: 2, 4039: 2, 63479: 2, 1143245: 2, 538574: 1, 337360: 1, 72657: 2, 315350: 2, 167385: 2, 4058: 2, 1339356: 2, 126429: 2, 74718: 2, 34273: 2, 34274: 2, 34275: 2, 34276: 2, 34277: 2, 157670: 1, 4072: 2, 3818: 2, 3562: 2, 4076: 2, 44015: 2, 47600: 2, 4081: 2, 47602: 2, 904691: 2, 4084: 2, 1523625: 2, 180217: 2, 414717: 2, 542719: 2}; species_name=###; family=-1; family_name=###; scientific_name=Pentapetalae; trna=trnI; taxid=1437201; genus_name=###; rank=no rank; genus=-1; species=-1; Arabidopsis thaliana chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcgaattcgtaggttcaat -tcctactggatgcac ->trnI count=2; merged_taxid={4177: 2}; species_name=Epifagus virginiana; family=91896; distance=1; scientific_name=Epifagus virginiana; trna=trnI; gbac=NC_001568; taxid=4177; genus_name=Epifagus; family_name=Orobanchaceae; rank=species; genus=4176; species=4177; Epifagus virginiana chloroplast, complete genome. -gcatccatggcttaatggttaaagcgcccaactcataattggcgaatttgtaggttcaat -tcctactggatgcac ->trnI count=28; merged_taxid={151562: 2, 3339: 2, 3342: 2, 3343: 2, 71632: 2, 3352: 2, 97170: 2, 3348: 2, 64686: 2, 3350: 2, 88728: 2, 88730: 2, 71643: 2, 71402: 2}; species_name=###; family=3318; family_name=Pinaceae; scientific_name=Pinaceae; trna=trnI; taxid=3318; genus_name=###; rank=family; genus=-1; species=-1; Pinus thunbergii chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcgaactcgcgggttcaat -tcctgctggatgca ->trnfM count=12; merged_taxid={151562: 1, 3339: 1, 3342: 1, 3343: 1, 71632: 1, 3352: 1, 97170: 1, 3348: 1, 3350: 1, 88728: 1, 88730: 1, 71643: 1}; species_name=###; family=3318; distance=0; scientific_name=Pinaceae; trna=trnfM; taxid=3318; genus_name=###; family_name=Pinaceae; rank=family; genus=-1; species=-1; Pinus thunbergii chloroplast, complete genome. -tgcggagtagagtagtctggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcca ->trnfM count=73; merged_taxid={4608: 1, 65975: 1, 387591: 1, 15368: 1, 862985: 1, 338574: 1, 63632: 1, 66008: 1, 280850: 1, 146652: 1, 29678: 1, 280854: 1, 1056921: 1, 4505: 1, 38687: 1, 416032: 1, 863009: 1, 91528: 1, 941476: 1, 196901: 1, 717233: 1, 4521: 1, 4522: 1, 145835: 1, 548140: 1, 863024: 1, 38705: 1, 548148: 1, 548150: 1, 193079: 1, 158136: 1, 4532: 1, 1243775: 1, 145980: 1, 221757: 1, 98750: 1, 4543: 1, 159298: 1, 145987: 1, 145989: 1, 38727: 1, 1010633: 1, 524874: 1, 4555: 1, 4558: 1, 1235664: 1, 4565: 1, 886359: 1, 4568: 1, 717604: 1, 1547847: 1, 4572: 1, 38729: 1, 146655: 1, 4577: 1, 257763: 1, 4582: 1, 58215: 1, 591208: 1, 38716: 1, 69994: 1, 93677: 1, 591214: 1, 4591: 1, 111431: 1, 110453: 1, 42072: 1, 591225: 1, 862994: 1, 29695: 1, 112509: 1, 4606: 1, 40149: 1}; species_name=###; family=4479; family_name=Poaceae; scientific_name=Poaceae; trna=trnfM; taxid=4479; genus_name=###; rank=family; genus=-1; species=-1; Zea mays chloroplast, complete genome. -gagcggagtagagcagtttggtagctcacgaggctcataaccttgaggtcacgggttcga -ttcccgtctccgcact ->trnM count=53; merged_taxid={387591: 1, 15368: 1, 862985: 1, 338574: 1, 280850: 1, 280854: 1, 4505: 1, 38686: 1, 38687: 1, 863009: 1, 91528: 1, 941476: 1, 196901: 1, 4529: 1, 111431: 1, 548140: 1, 863024: 1, 38705: 1, 65970: 1, 548148: 1, 548150: 1, 193079: 1, 158136: 1, 4532: 1, 145980: 1, 4543: 1, 145987: 1, 145989: 1, 38727: 1, 1010633: 1, 524874: 1, 4555: 1, 4558: 1, 1235664: 1, 40149: 1, 886359: 1, 66008: 1, 717604: 1, 146652: 1, 38729: 1, 146655: 1, 4577: 1, 257763: 1, 4582: 1, 591208: 1, 38716: 1, 93677: 1, 591214: 1, 4591: 1, 110453: 1, 591225: 1, 862994: 1, 1243775: 1}; species_name=###; family=4479; family_name=Poaceae; scientific_name=Poaceae; trna=trnM; taxid=4479; genus_name=###; rank=family; genus=-1; species=-1; Zea mays chloroplast, complete genome. -tgcctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaa -tccaatagtaggtag ->trnI count=137; merged_taxid={4608: 2, 387591: 2, 15368: 2, 862985: 2, 338574: 2, 63632: 2, 66008: 2, 280850: 2, 146652: 2, 29678: 2, 280854: 2, 1056921: 2, 130456: 1, 4505: 2, 130459: 1, 416032: 2, 863009: 2, 91528: 2, 941476: 2, 196901: 2, 717233: 2, 4521: 2, 4522: 2, 145835: 2, 548140: 2, 65970: 2, 38705: 2, 37682: 1, 548148: 2, 548150: 2, 193079: 2, 158136: 2, 4532: 2, 1243775: 2, 145980: 2, 221757: 2, 98750: 2, 4543: 2, 159298: 2, 145987: 1, 145989: 2, 4550: 1, 38727: 2, 1010633: 2, 524874: 2, 4555: 2, 4558: 2, 1235664: 2, 4529: 2, 4565: 2, 886359: 2, 4568: 1, 717604: 2, 1547847: 2, 4572: 1, 4573: 1, 38729: 2, 146655: 2, 4577: 2, 257763: 1, 4582: 2, 58215: 2, 591208: 2, 69994: 2, 591214: 2, 4591: 2, 110453: 2, 42072: 2, 591225: 2, 29695: 2, 112509: 2, 4606: 2, 40149: 2}; species_name=###; family=4479; distance=1; scientific_name=Poaceae; trna=trnI; taxid=4479; genus_name=###; family_name=Poaceae; rank=family; genus=-1; species=-1; Zea mays chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggtaaatttgcgggttcaat -tcctgctggatgcac ->trnI count=1; merged_taxid={3077: 1}; species_name=Chlorella vulgaris; family=35461; family_name=Chlorellaceae; scientific_name=Chlorella vulgaris; trna=trnI; gbac=NC_001865; taxid=3077; genus_name=Chlorella; rank=species; genus=3071; species=3077; distance=0; Chlorella vulgaris chloroplast, complete genome. -gcacctatggcagagtggtcgattgcaccgcactcataatgcggtttcgaaagaacatcg -ttggttcaaacccaactgggtgca ->trnfM count=1; merged_taxid={3077: 1}; species_name=Chlorella vulgaris; family=35461; family_name=Chlorellaceae; scientific_name=Chlorella vulgaris; trna=trnfM; gbac=NC_001865; taxid=3077; genus_name=Chlorella; rank=species; genus=3071; species=3077; distance=0; Chlorella vulgaris chloroplast, complete genome. -agcggagtagagcagtctggtagctcgtaaggctcataaccttaaggccgtgggttcgaa -tcctacctccgctc ->trnM count=1; merged_taxid={3077: 1}; species_name=Chlorella vulgaris; family=35461; family_name=Chlorellaceae; scientific_name=Chlorella vulgaris; trna=trnM; gbac=NC_001865; taxid=3077; genus_name=Chlorella; rank=species; genus=3071; species=3077; distance=0; Chlorella vulgaris chloroplast, complete genome. -gcctgcttagctcagttggttagagcatccgtctcatacgcggaatgtcactagttcgaa -tctagtagcaggcacca ->trnM count=25; merged_taxid={4096: 1, 4097: 1, 4098: 1, 362373: 1, 4113: 1, 142759: 1, 62890: 1, 62891: 1, 126903: 1, 118713: 1, 315350: 1, 126905: 1, 33113: 1, 147425: 1, 362342: 1, 4072: 1, 362345: 1, 362346: 1, 4076: 1, 4081: 1, 4082: 1, 4083: 1, 4084: 1, 362363: 1, 362364: 1}; species_name=###; family=4070; distance=0; scientific_name=Solanaceae; trna=trnM; taxid=4070; genus_name=###; family_name=Solanaceae; rank=family; genus=-1; species=-1; Nicotiana tabacum plastid, complete genome. -acctacttaactcagtggttagagtactgctttcatacggcgggagtcattggttcaaat -ccaatagtaggta ->trnI count=1; merged_taxid={41882: 1}; species_name=Mesostigma viride; family=35428; family_name=Mesostigmataceae; scientific_name=Mesostigma viride; trna=trnI; gbac=NC_002186; taxid=41882; genus_name=Mesostigma; rank=species; genus=41881; species=41882; distance=0; Mesostigma viride chloroplast, complete genome. -gcatctattgccgagaggccgaaggcggcggactcataatccgttatctcgaaagagaca -tcgctggttcgaatccagctggatgca ->trnfM count=1; merged_taxid={41882: 1}; species_name=Mesostigma viride; family=35428; family_name=Mesostigmataceae; scientific_name=Mesostigma viride; trna=trnfM; gbac=NC_002186; taxid=41882; genus_name=Mesostigma; rank=species; genus=41881; species=41882; distance=1; Mesostigma viride chloroplast, complete genome. -tcgcggtgtagagcagtctggtagctcgtcgggctcataacccgaaggtcgatggttcaa -atccaccctccgcaat ->trnfM count=29; merged_taxid={4230: 1, 4232: 1, 4233: 1, 13333: 1, 73285: 1, 98722: 1, 287011: 1, 228393: 1, 44586: 1, 82096: 1, 192264: 1, 4146: 1, 133939: 1, 13748: 1, 204340: 1, 133946: 1, 73283: 1, 230597: 1, 73288: 1, 73291: 1, 73293: 1, 73297: 1, 4054: 1, 137943: 1, 382522: 1, 153571: 1, 176616: 1, 3562: 1, 397682: 1}; species_name=###; family=-1; family_name=###; scientific_name=Euphyllophyta; trna=trnfM; taxid=78536; genus_name=###; rank=no rank; genus=-1; species=-1; Spinacia oleracea plastid, complete genome. -cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcaa ->trnM count=37; merged_taxid={124929: 1, 4230: 1, 4232: 1, 4233: 1, 100364: 1, 47634: 1, 47635: 1, 47636: 1, 47637: 1, 989334: 1, 129946: 1, 29730: 1, 287011: 1, 47622: 1, 3636: 1, 59062: 1, 382522: 1, 73283: 1, 73285: 1, 73288: 1, 4236: 1, 73291: 1, 73293: 1, 28494: 1, 73297: 1, 39899: 1, 106335: 1, 34274: 1, 34278: 1, 161126: 1, 176616: 1, 3562: 1, 47600: 1, 47602: 1, 20340: 1, 103032: 1, 34282: 1}; species_name=###; family=-1; family_name=###; scientific_name=Mesangiospermae; trna=trnM; taxid=1437183; genus_name=###; rank=no rank; genus=-1; species=-1; Spinacia oleracea plastid, complete genome. -acctacttaactcagcggttagagtattgctttcatacggcgggagtcattggttcaaat -ccaatagtaggta ->trnI count=14; merged_taxid={3940: 2, 3942: 2, 28971: 2, 85636: 2, 39899: 2, 482428: 2, 482429: 2}; species_name=###; family=-1; distance=1; scientific_name=Pentapetalae; trna=trnI; taxid=1437201; genus_name=###; family_name=###; rank=no rank; genus=-1; species=-1; Oenothera elata subsp. hookeri plastid plastome I, complete sequence. -gcatccatggctgaatggttaaagcgcccaactcataattggcgaattcgtgggttcaat -tcctactggatgcac ->trnM count=7; merged_taxid={34305: 1, 98722: 1, 39875: 1, 39848: 1, 490730: 1, 37657: 1, 42043: 1}; species_name=###; family=-1; distance=0; scientific_name=Pentapetalae; trna=trnM; taxid=1437201; genus_name=###; family_name=###; rank=no rank; genus=-1; species=-1; Lotus japonicus chloroplast, complete genome. -acctacttaactcagcggttagagtatcgctttcatacggcgggagtcattggttcaaat -ccaatagtaggta ->trnM count=16; merged_taxid={4608: 1, 159298: 1, 4550: 1, 4521: 1, 4522: 1, 145835: 1, 63632: 1, 130456: 1, 37682: 1, 4565: 1, 69994: 1, 4568: 1, 130459: 1, 4572: 1, 112509: 1, 98750: 1}; species_name=###; family=4479; distance=1; scientific_name=Pooideae; trna=trnM; taxid=147368; genus_name=###; family_name=Poaceae; rank=subfamily; genus=-1; species=-1; Triticum aestivum chloroplast, complete genome. -tgcctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaa -tccaatagtaggtaa ->trnI count=3; merged_taxid={3880: 1, 49827: 1, 97044: 1}; species_name=###; family=3803; distance=1; scientific_name=Papilionoideae; trna=trnI; taxid=3814; genus_name=###; family_name=Fabaceae; rank=subfamily; genus=-1; species=-1; Medicago truncatula chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcgaagtcgtaggttcaat -tcctactggatgcac ->trnfM count=14; merged_taxid={56065: 1, 185702: 1, 3847: 1, 3880: 1, 82538: 1, 44015: 1, 96944: 1, 3848: 1, 3827: 1, 109171: 1, 45689: 1, 45690: 1, 48924: 1, 713886: 1}; species_name=###; family=3803; distance=1; scientific_name=Papilionoideae; trna=trnfM; taxid=3814; genus_name=###; family_name=Fabaceae; rank=subfamily; genus=-1; species=-1; Medicago truncatula chloroplast, complete genome. -cgcggagtagagcaacttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcaac ->trnfM count=1; merged_taxid={3240: 1}; species_name=Psilotum nudum; family=3238; family_name=Psilotaceae; scientific_name=Psilotum nudum; trna=trnfM; gbac=NC_003386; taxid=3240; genus_name=Psilotum; rank=species; genus=3239; species=3240; distance=0; Psilotum nudum chloroplast, complete genome. -cgcgggatagagcagcttggtagctcgtaaggctcataaccttgaggtcacgggttcaaa -tcccgtacccgcaa ->trnM count=1; merged_taxid={3240: 1}; species_name=Psilotum nudum; family=3238; family_name=Psilotaceae; scientific_name=Psilotum nudum; trna=trnM; gbac=NC_003386; taxid=3240; genus_name=Psilotum; rank=species; genus=3239; species=3240; distance=0; Psilotum nudum chloroplast, complete genome. -acctacttaactcagtggttagagtatcgctttcataaggcgagagtcattggttcaaat -ccaatagtaggta ->trnI count=1; merged_taxid={3240: 1}; species_name=Psilotum nudum; family=3238; family_name=Psilotaceae; scientific_name=Psilotum nudum; trna=trnI; gbac=NC_003386; taxid=3240; genus_name=Psilotum; rank=species; genus=3239; species=3240; distance=0; Psilotum nudum chloroplast, complete genome. -gcatccatggctgaatggtaaaagcacccgactcataatcggcgaattcgcaggttcaat -tcctgttggatgca ->trnM count=1; merged_taxid={96477: 1}; species_name=Chaetosphaeridium globosum; family=160437; family_name=Chaetosphaeridiaceae; scientific_name=Chaetosphaeridium globosum; trna=trnM; gbac=NC_004115; taxid=96477; genus_name=Chaetosphaeridium; rank=species; genus=96476; species=96477; distance=0; Chaetosphaeridium globosum chloroplast, complete genome. -gcctacttaactcagcggttagagtgtcgctttcatacggcgaaggtcattggttcaaat -ccaatagtaggta ->trnI count=1; merged_taxid={96477: 1}; species_name=Chaetosphaeridium globosum; family=160437; family_name=Chaetosphaeridiaceae; scientific_name=Chaetosphaeridium globosum; trna=trnI; gbac=NC_004115; taxid=96477; genus_name=Chaetosphaeridium; rank=species; genus=96476; species=96477; distance=0; Chaetosphaeridium globosum chloroplast, complete genome. -gcatctatagccgagtggttaaggcacccaactcataattggagaactcgcaggttcgaa -tcctgctagatgca ->trnfM count=1; merged_taxid={48387: 1}; species_name=Anthoceros angustus; family=13811; family_name=Anthocerotaceae; scientific_name=Anthoceros angustus; trna=trnfM; gbac=NC_004543; taxid=48387; genus_name=Anthoceros; rank=species; genus=3233; species=48387; distance=0; Anthoceros formosae chloroplast, complete genome. -cgcggggtagagcagcctggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcca ->trnM count=1; merged_taxid={48387: 1}; species_name=Anthoceros angustus; family=13811; family_name=Anthocerotaceae; scientific_name=Anthoceros angustus; trna=trnM; gbac=NC_004543; taxid=48387; genus_name=Anthoceros; rank=species; genus=3233; species=48387; distance=0; Anthoceros formosae chloroplast, complete genome. -acctacttaacttagtggttagagtatcgctttcatacggcgagagtcattggttcaaat -ccaatagtaggta ->trnI count=7; merged_taxid={388472: 1, 13825: 2, 397682: 1, 48387: 1, 491814: 2}; species_name=###; family=-1; distance=0; scientific_name=Embryophyta; trna=trnI; taxid=3193; genus_name=###; family_name=###; rank=no rank; genus=-1; species=-1; Anthoceros formosae chloroplast, complete genome. -gcatccatggctgaacggttaaagcacccaactcataattggcgaattcacaggttcaac -tcctgttggatgca ->trnfM count=1; merged_taxid={13818: 1}; species_name=Adiantum capillus-veneris; family=13819; family_name=Pteridaceae; scientific_name=Adiantum capillus-veneris; trna=trnfM; gbac=NC_004766; taxid=13818; genus_name=Adiantum; rank=species; genus=13817; species=13818; distance=0; Adiantum capillus-veneris chloroplast, complete genome. -cgcggggtggagcagcttggtagctcgcgaggctcataacctcgaggtcacgggttcaaa -tcccgtctccgcaa ->trnM count=1; merged_taxid={13818: 1}; species_name=Adiantum capillus-veneris; family=13819; family_name=Pteridaceae; scientific_name=Adiantum capillus-veneris; trna=trnM; gbac=NC_004766; taxid=13818; genus_name=Adiantum; rank=species; genus=13817; species=13818; distance=0; Adiantum capillus-veneris chloroplast, complete genome. -gcctacttaactcagcggtgagagtatcgctttcatacggcgagagtcattggttcgaat -ccaatagtaggta ->trnI count=5; merged_taxid={13818: 1, 531291: 1, 104588: 1, 204586: 1, 13813: 1}; species_name=###; family=-1; distance=0; scientific_name=Embryophyta; trna=trnI; taxid=3193; genus_name=###; family_name=###; rank=no rank; genus=-1; species=-1; Adiantum capillus-veneris chloroplast, complete genome. -gcatccatggctgaacggtcaaagcacccaactcataattggcgaattcacaggttcaac -tcctgttggatgca ->trnM count=143; merged_taxid={108544: 1, 60419: 1, 1495044: 1, 542733: 1, 321550: 1, 124943: 1, 49684: 1, 152089: 1, 152093: 1, 129566: 1, 3760: 1, 228393: 1, 44586: 1, 3627: 1, 1125932: 1, 182317: 1, 192264: 1, 3634: 1, 3635: 1, 4664: 1, 41396: 1, 103483: 1, 103349: 1, 29760: 1, 13894: 1, 86093: 1, 319928: 1, 4692: 1, 4182: 1, 133939: 1, 167439: 1, 497767: 1, 82538: 1, 123495: 1, 242290: 1, 109171: 1, 45689: 1, 45690: 1, 96944: 1, 1276543: 1, 4460: 1, 101007: 1, 101015: 1, 194713: 1, 101020: 1, 713886: 1, 54469: 1, 329890: 1, 1454364: 1, 158383: 1, 82096: 1, 158385: 1, 3767: 1, 230597: 1, 3873: 1, 23250: 1, 147918: 1, 137943: 1, 4312: 1, 131289: 1, 102107: 1, 715485: 1, 478946: 1, 51953: 1, 102697: 1, 212734: 1, 56065: 1, 198914: 1, 3847: 1, 3848: 1, 180498: 1, 59097: 1, 76056: 1, 60698: 1, 48924: 1, 3870: 1, 13601: 1, 597284: 1, 3641: 1, 292647: 1, 138025: 1, 192300: 1, 4146: 1, 145710: 1, 41776: 1, 4403: 1, 53046: 1, 244023: 1, 159033: 1, 133946: 1, 1049916: 1, 597311: 1, 101696: 1, 1308043: 1, 3625: 1, 4428: 1, 4431: 1, 4432: 1, 71139: 1, 228183: 1, 4442: 1, 185702: 1, 42345: 1, 1186155: 1, 385388: 1, 4472: 1, 108411: 1, 1186172: 1, 223107: 1, 29729: 1, 2711: 1, 55185: 1, 153490: 1, 3483: 1, 105884: 1, 226208: 1, 1523625: 1, 64939: 1, 191923: 1, 13748: 1, 319925: 1, 3512: 1, 22978: 1, 101708: 1, 472368: 1, 1143245: 1, 538574: 1, 995793: 1, 4054: 1, 29656: 1, 167385: 1, 1339356: 1, 126429: 1, 126431: 1, 34273: 1, 34275: 1, 34276: 1, 34277: 1, 157670: 1, 34280: 1, 44015: 1, 452972: 1, 542719: 1}; species_name=###; family=-1; family_name=###; scientific_name=Mesangiospermae; trna=trnM; taxid=1437183; genus_name=###; rank=no rank; genus=-1; species=-1; Calycanthus floridus var. glaucus chloroplast, complete genome. -acctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaat -ccaatagtaggta ->trnI count=8; merged_taxid={41776: 2, 13006: 2, 212734: 2, 13007: 2}; species_name=###; family=-1; distance=1; scientific_name=Mesangiospermae; trna=trnI; taxid=1437183; genus_name=###; family_name=###; rank=no rank; genus=-1; species=-1; Calycanthus floridus var. glaucus chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcgaattcgtaggttcaat -tcctgctggatgcac ->trnM count=30; merged_taxid={200642: 1, 13715: 1, 13333: 1, 141207: 1, 451881: 1, 1564205: 1, 53042: 1, 405043: 1, 77108: 1, 4407: 1, 1324860: 1, 86722: 1, 459588: 1, 459589: 1, 459594: 1, 53069: 1, 3406: 1, 114512: 1, 162386: 1, 3415: 1, 112603: 1, 256348: 1, 224735: 1, 112615: 1, 85864: 1, 85865: 1, 78828: 1, 53104: 1, 44926: 1, 63359: 1}; species_name=###; family=-1; family_name=###; scientific_name=Magnoliophyta; trna=trnM; taxid=3398; genus_name=###; rank=no rank; genus=-1; species=-1; Amborella trichopoda chloroplast, complete genome. -acctacttaacccagtggttagagtattgctttcatacggcgggagtcattggttcaaat -ccaatagtaggta ->trnI count=142; merged_taxid={108544: 2, 4407: 2, 145284: 2, 4615: 2, 78828: 2, 1049916: 2, 142615: 2, 100364: 2, 200642: 2, 59062: 2, 29656: 2, 13715: 2, 398741: 2, 48534: 2, 141207: 2, 55577: 2, 160538: 2, 1605147: 2, 93213: 2, 60698: 2, 292647: 2, 152089: 2, 451881: 2, 125444: 2, 152093: 2, 53042: 2, 4403: 2, 77108: 2, 53046: 2, 154679: 2, 1324860: 2, 101696: 2, 86722: 2, 1264566: 2, 13894: 2, 4679: 2, 244023: 2, 4428: 2, 53069: 2, 3406: 2, 4431: 2, 114512: 2, 162386: 2, 4692: 2, 3415: 2, 161112: 2, 59097: 2, 112603: 2, 256348: 2, 125431: 2, 224735: 2, 85856: 2, 4432: 2, 153571: 2, 161126: 2, 112615: 2, 85864: 2, 85865: 2, 4460: 2, 29650: 1, 34301: 2, 53104: 2, 405043: 2, 55185: 6, 198697: 2, 105594: 2, 108411: 2, 4733: 2, 44926: 2, 13333: 1}; species_name=###; family=-1; family_name=###; scientific_name=Magnoliophyta; trna=trnI; taxid=3398; genus_name=###; rank=no rank; genus=-1; species=-1; Amborella trichopoda chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcaaattcgtaggttcaat -tcctgctggatgcac ->trnM count=3; merged_taxid={3218: 1, 140003: 1, 1592803: 1}; species_name=###; family=-1; family_name=###; scientific_name=Bryopsida; trna=trnM; taxid=3214; genus_name=###; rank=class; genus=-1; species=-1; Physcomitrella patens subsp. patens chloroplast, complete genome. -gcctacttaactcagtggtttagagtatcgctttcatacggcgagagtcattggttcaaa -tccaatagtaggta ->trnfM count=1; merged_taxid={3218: 1}; species_name=Physcomitrella patens; family=3216; family_name=Funariaceae; scientific_name=Physcomitrella patens; trna=trnfM; gbac=NC_005087; taxid=3218; genus_name=Physcomitrella; rank=species; genus=3217; species=3218; distance=1; Physcomitrella patens subsp. patens chloroplast, complete genome. -tcgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcatgggttcaa -atcccgtctccgctaa ->trnI count=1; merged_taxid={3218: 1}; species_name=Physcomitrella patens; family=3216; family_name=Funariaceae; scientific_name=Physcomitrella patens; trna=trnI; gbac=NC_005087; taxid=3218; genus_name=Physcomitrella; rank=species; genus=3217; species=3218; distance=0; Physcomitrella patens subsp. patens chloroplast, complete genome. -gcatccatagctgaacggttaaagcacccaactcataattggagaattcgcaggttcaac -tcctgttggatgca ->trnM count=2; merged_taxid={33097: 1, 3055: 1}; species_name=###; family=-1; distance=0; scientific_name=Chlamydomonadales; trna=trnM; taxid=3042; genus_name=###; family_name=###; rank=order; genus=-1; species=-1; Chlamydomonas reinhardtii chloroplast, complete genome. -gcctgcttagctcagttggttagagcgtccgtttcataagctgattgtcactagttcaaa -tctagtagcaggca ->trnM count=2; merged_taxid={105594: 1, 34301: 1}; species_name=###; family=4410; family_name=Nymphaeaceae; scientific_name=Nymphaea; trna=trnM; taxid=4418; genus_name=Nymphaea; rank=genus; genus=4418; species=-1; Nymphaea alba chloroplast, complete genome. -acctacttaacccagtggttagagtgttgctttcatacggcgggagtcattggttcaaat -ccaatagtaggta ->trnM count=1; merged_taxid={717233: 1}; species_name=Saccharum hybrid cultivar; family=4479; family_name=Poaceae; scientific_name=Saccharum hybrid cultivar NCo 310; trna=trnM; gbac=NC_006084; taxid=717233; genus_name=Saccharum; rank=no rank; genus=4546; species=128810; distance=1; Saccharum hybrid cultivar NCo 310 chloroplast, complete genome. -tgcctacttaactcagtggttagagtatagctttcatacggcgggagtcattggttcaaa -tccaatagtaggtag ->trnM count=16; merged_taxid={884032: 1, 13825: 1, 85954: 1, 491814: 1, 48929: 1, 3981: 1, 54798: 1, 466205: 1, 996148: 1, 37429: 1, 257623: 1, 3284: 1, 3258: 1, 39584: 1, 487038: 1, 3262: 1}; species_name=###; family=-1; family_name=###; scientific_name=Tracheophyta; trna=trnM; taxid=58023; genus_name=###; rank=no rank; genus=-1; species=-1; Huperzia lucidula chloroplast, complete genome. -acctacttaactcagtggttagagtatcgctttcatacggcgagagtcattggttcaaat -ccaatagtaggta ->trnfM count=1; merged_taxid={37429: 1}; species_name=Huperzia lucidula; family=3250; family_name=Lycopodiaceae; scientific_name=Huperzia lucidula; trna=trnfM; gbac=NC_006861; taxid=37429; genus_name=Huperzia; rank=species; genus=37428; species=37429; distance=0; Huperzia lucidula chloroplast, complete genome. -cgcggagtagagcagcttggtagctcgcgaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcca ->trnM count=10; merged_taxid={171009: 1, 396994: 1, 412675: 1, 34343: 1, 28971: 1, 40716: 1, 3659: 1, 54799: 1, 13365: 1, 42329: 1}; species_name=###; family=-1; family_name=###; scientific_name=Spermatophyta; trna=trnM; taxid=58024; genus_name=###; rank=no rank; genus=-1; species=-1; Cucumis sativus chloroplast, complete genome. -acctacttaactcagtggttagagtatcgctttcatacggcgggagtcattggttcaaat -ccaatagtaggta ->trnfM count=3; merged_taxid={55184: 1, 4465: 1, 263995: 1}; species_name=###; family=42228; distance=1; scientific_name=Acorus; trna=trnfM; taxid=4464; genus_name=Acorus; family_name=Acoraceae; rank=genus; genus=4464; species=-1; Acorus calamus plastid, complete genome. -cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacaggttcaaa -tcctgtctccgcaac ->trnM count=3; merged_taxid={55184: 1, 4465: 1, 263995: 1}; species_name=###; family=42228; distance=2; scientific_name=Acorus; trna=trnM; taxid=4464; genus_name=Acorus; family_name=Acoraceae; rank=genus; genus=4464; species=-1; Acorus calamus plastid, complete genome. -tacctacttaacccagtggttagagtattgctttcatacggcgggagtcattggttcaaa -tccaatagtaggtag ->trnI count=6; merged_taxid={55184: 2, 4465: 2, 263995: 2}; species_name=###; family=42228; distance=0; scientific_name=Acorus; trna=trnI; taxid=4464; genus_name=Acorus; family_name=Acoraceae; rank=genus; genus=4464; species=-1; Acorus calamus plastid, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcgaattcgtaggttcaat -tcctgctggatgca ->trnfM count=22; merged_taxid={47634: 1, 47635: 1, 47636: 1, 47637: 1, 76056: 1, 29729: 1, 29730: 1, 3634: 1, 3635: 1, 3636: 1, 3641: 1, 34273: 1, 34274: 1, 34275: 1, 34276: 1, 34277: 1, 34278: 1, 34280: 1, 34282: 1, 34284: 1, 47600: 1, 47602: 1}; species_name=###; family=3629; distance=1; scientific_name=Malvaceae; trna=trnfM; taxid=3629; genus_name=###; family_name=Malvaceae; rank=family; genus=-1; species=-1; Gossypium hirsutum chloroplast, complete genome. -cgcgggatagagcagtttggtagctcgcaaggctcataaccttgaggtcatgggttcaaa -tcccgttcccgcaac ->trnfM count=2; merged_taxid={29760: 1, 103349: 1}; species_name=###; family=3602; distance=1; scientific_name=Vitis; trna=trnfM; taxid=3603; genus_name=Vitis; family_name=Vitaceae; rank=genus; genus=3603; species=-1; Vitis vinifera chloroplast, complete genome. -ggcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcaa ->trnI count=49; merged_taxid={124929: 2, 1407619: 2, 4230: 2, 4232: 2, 4233: 2, 395280: 2, 98722: 2, 287011: 2, 138025: 2, 146995: 2, 382522: 2, 4031: 1, 337345: 1, 73283: 2, 73285: 2, 73288: 2, 73291: 2, 73293: 2, 28494: 1, 73297: 2, 669134: 2, 337368: 2, 73178: 1, 35935: 1, 41568: 2, 337380: 1, 176616: 2, 103032: 1}; species_name=###; family=-1; family_name=###; scientific_name=Pentapetalae; trna=trnI; taxid=1437201; genus_name=###; rank=no rank; genus=-1; species=-1; Helianthus annuus chloroplast, complete genome. -gcatccatggctgaatggttaaagcacccaactcataattggcgaattcgtaggttcaat -tcctactggatgcac ->trnM count=1; merged_taxid={55564: 1}; species_name=Chara vulgaris; family=3146; family_name=Characeae; scientific_name=Chara vulgaris; trna=trnM; gbac=NC_008097; taxid=55564; genus_name=Chara; rank=species; genus=13778; species=55564; distance=1; Chara vulgaris chloroplast, complete genome. -tgcctacttaactcagtggttagagtattgctttcataaggcaagagtcattggttcaag -tccaatagtaggcaa ->trnI count=1; merged_taxid={55564: 1}; species_name=Chara vulgaris; family=3146; family_name=Characeae; scientific_name=Chara vulgaris; trna=trnI; gbac=NC_008097; taxid=55564; genus_name=Chara; rank=species; genus=13778; species=55564; distance=2; Chara vulgaris chloroplast, complete genome. -tgtatccatggctgagcggttaaagcgcccaactcataattggagaattcgcaggttcga -atcctgctggatgcatc ->trnM count=1; merged_taxid={51324: 1}; species_name=Oltmannsiellopsis viridis; family=-1; family_name=###; scientific_name=Oltmannsiellopsis viridis; trna=trnM; gbac=NC_008099; taxid=51324; genus_name=Oltmannsiellopsis; rank=species; genus=51323; species=51324; distance=0; Oltmannsiellopsis viridis chloroplast, complete genome. -gcctgcttaactcagtggtagagtacccgtctcatacgcggagtgtcactagttcgactc -tagtagcaggca ->trnM count=1; merged_taxid={145475: 1}; species_name=Helicosporidium sp. ex Simulium jonesi; family=-1; family_name=###; scientific_name=Helicosporidium sp. ex Simulium jonesi; trna=trnM; gbac=NC_008100; taxid=145475; genus_name=Helicosporidium; rank=species; genus=145474; species=145475; distance=0; Helicosporidium sp. ex Simulium jonesii plastid, complete genome. -atcttcttaactcagtggttagagggtccgtttcatacgcggaaagtcactggttcaatt -ccagtagaagata ->trnI count=1; merged_taxid={145475: 1}; species_name=Helicosporidium sp. ex Simulium jonesi; family=-1; family_name=###; scientific_name=Helicosporidium sp. ex Simulium jonesi; trna=trnI; gbac=NC_008100; taxid=145475; genus_name=Helicosporidium; rank=species; genus=145474; species=145475; distance=0; Helicosporidium sp. ex Simulium jonesii plastid, complete genome. -gcatctatggcagagtggtcgaatgcaccgcactcataatgcggaattataaacgtcgtt -ggttcaaacccaactggatgca ->trnI count=1; merged_taxid={3088: 1}; species_name=Acutodesmus obliquus; family=3086; family_name=Scenedesmaceae; scientific_name=Acutodesmus obliquus; trna=trnI; gbac=NC_008101; taxid=3088; genus_name=Acutodesmus; rank=species; genus=1169107; species=3088; distance=1; Acutodesmus obliquus strain UTEX 393 chloroplast, complete genome. -acactgttggccgagcggattaggcaatcgactcataatcgtttttagataggttcaact -cctatacggtgtac ->trnM count=1; merged_taxid={3088: 1}; species_name=Acutodesmus obliquus; family=3086; family_name=Scenedesmaceae; scientific_name=Acutodesmus obliquus; trna=trnM; gbac=NC_008101; taxid=3088; genus_name=Acutodesmus; rank=species; genus=1169107; species=3088; distance=0; Acutodesmus obliquus strain UTEX 393 chloroplast, complete genome. -gcctgcttagctcagttggccagagcatccgtttcatacgcggaaagtcactagttcgaa -tctagtagcaggca ->trnI count=1; merged_taxid={160070: 1}; species_name=Pseudendoclonium akinetum; family=-1; family_name=###; scientific_name=Pseudendoclonium akinetum; trna=trnI; gbac=NC_008114; taxid=160070; genus_name=Pseudendoclonium; rank=species; genus=43938; species=160070; distance=0; Pseudendoclonium akinetum chloroplast, complete genome. -gcatctgtggccgaggggttgatggcaacggactcataatccgtctttcttttagaacac -cgtgggttcaaatcccaccggatgca ->trnM count=1; merged_taxid={160070: 1}; species_name=Pseudendoclonium akinetum; family=-1; family_name=###; scientific_name=Pseudendoclonium akinetum; trna=trnM; gbac=NC_008114; taxid=160070; genus_name=Pseudendoclonium; rank=species; genus=43938; species=160070; distance=0; Pseudendoclonium akinetum chloroplast, complete genome. -gcctaattagctcagttggttagagcgtccgtctcatacgcggaatgtcactagttcgaa -tctagtattaggca ->trnM count=1; merged_taxid={102822: 1}; species_name=Staurastrum punctulatum; family=31314; family_name=Desmidiaceae; scientific_name=Staurastrum punctulatum; trna=trnM; gbac=NC_008116; taxid=102822; genus_name=Staurastrum; rank=species; genus=31317; species=102822; distance=0; Staurastrum punctulatum chloroplast, complete genome. -gcctacttaactcagtggttagagtatcgctttcatacggcgagagtcattggttcaaat -ccaatagtaggca ->trnI count=1; merged_taxid={102822: 1}; species_name=Staurastrum punctulatum; family=31314; family_name=Desmidiaceae; scientific_name=Staurastrum punctulatum; trna=trnI; gbac=NC_008116; taxid=102822; genus_name=Staurastrum; rank=species; genus=31317; species=102822; distance=1; Staurastrum punctulatum chloroplast, complete genome. -gcatccatggctgagtggttaaagcacccaactcataattggttttttcgcgggttcgag -tcctgctggatgcac ->trnI count=1; merged_taxid={35869: 1}; species_name=Zygnema circumcarinatum; family=3178; family_name=Zygnemataceae; scientific_name=Zygnema circumcarinatum; trna=trnI; gbac=NC_008117; taxid=35869; genus_name=Zygnema; rank=species; genus=43951; species=35869; distance=0; Zygnema circumcarinatum chloroplast, complete genome. -gcatccatggctgagtggttaaagcacccaactcataattgggcacttcgcgggttcgag -tcctgctggatgca ->trnM count=1; merged_taxid={35869: 1}; species_name=Zygnema circumcarinatum; family=3178; family_name=Zygnemataceae; scientific_name=Zygnema circumcarinatum; trna=trnM; gbac=NC_008117; taxid=35869; genus_name=Zygnema; rank=species; genus=43951; species=35869; distance=0; Zygnema circumcarinatum chloroplast, complete genome. -gcctacttaactcagcggttagagtgtcgctttcatacggcgagagtcattggttcaagt -ccaatagtaggca ->trnM count=5; merged_taxid={73824: 1, 75702: 1, 3885: 1, 295326: 1, 43335: 1}; species_name=###; family=-1; family_name=###; scientific_name=fabids; trna=trnM; taxid=91835; genus_name=###; rank=no rank; genus=-1; species=-1; Populus alba chloroplast, complete genome. -tacctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaa -tccaatagtaggtat ->trnfM count=1; merged_taxid={4039: 1}; species_name=Daucus carota; family=4037; family_name=Apiaceae; scientific_name=Daucus carota; trna=trnfM; gbac=NC_008325; taxid=4039; genus_name=Daucus; rank=species; genus=4038; species=4039; distance=1; Daucus carota chloroplast, complete genome. -agcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcaa ->trnM count=3; merged_taxid={97044: 1, 361918: 1, 4039: 1}; species_name=###; family=-1; distance=1; scientific_name=Pentapetalae; trna=trnM; taxid=1437201; genus_name=###; family_name=###; rank=no rank; genus=-1; species=-1; Daucus carota chloroplast, complete genome. -gcctacttaactcagtggttagagtattgctttcatacggcaggagtcattggttcaaat -ccaatagtaggta ->trnfM count=4; merged_taxid={159033: 1, 124943: 1, 57655: 1, 2711: 1}; species_name=###; family=-1; distance=1; scientific_name=Sapindales; trna=trnfM; taxid=41937; genus_name=###; family_name=###; rank=order; genus=-1; species=-1; Citrus sinensis chloroplast, complete genome. -cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcaac ->trnfM count=16; merged_taxid={13824: 2, 13825: 1, 63359: 1, 334596: 1, 491814: 1, 39848: 1, 204586: 1, 104588: 1, 39855: 1, 41776: 1, 1264566: 1, 37657: 1, 42043: 1, 93213: 1, 35935: 1}; species_name=###; family=-1; family_name=###; scientific_name=Euphyllophyta; trna=trnfM; taxid=78536; genus_name=###; rank=no rank; genus=-1; species=-1; Nandina domestica chloroplast, complete genome. -cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcaa ->trnfM count=21; merged_taxid={28960: 1, 377280: 1, 478946: 1, 71139: 1, 248361: 1, 3818: 1, 191923: 1, 321550: 1, 167439: 1, 103483: 1, 23250: 1, 60419: 1, 20340: 1, 75702: 1, 229049: 1, 3512: 1, 167385: 1, 744259: 1, 102697: 1, 77065: 1, 1278906: 1}; species_name=###; family=-1; distance=1; scientific_name=rosids; trna=trnfM; taxid=71275; genus_name=###; family_name=###; rank=subclass; genus=-1; species=-1; Morus indica chloroplast, complete genome. -cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcaac ->trnM count=5; merged_taxid={229049: 1, 248361: 1, 13443: 1, 154679: 1, 3649: 1}; species_name=###; family=-1; family_name=###; scientific_name=Mesangiospermae; trna=trnM; taxid=1437183; genus_name=###; rank=no rank; genus=-1; species=-1; Morus indica chloroplast, complete genome. -acctacttaactcagtggttagagtattgctttcatacggcgagagtcattggttcaaat -ccaatagtaggta ->trnI count=1; merged_taxid={55999: 1}; species_name=Stigeoclonium helveticum; family=-1; family_name=###; scientific_name=Stigeoclonium helveticum; trna=trnI; gbac=NC_008372; taxid=55999; genus_name=Stigeoclonium; rank=species; genus=55998; species=55999; distance=1; Stigeoclonium helveticum chloroplast, complete genome. -tgtactcttggccgagcggtttaggcaatcgactcataatcgattttaggtaggttcaac -tcctacagggtgcag ->trnM count=1; merged_taxid={55999: 1}; species_name=Stigeoclonium helveticum; family=-1; family_name=###; scientific_name=Stigeoclonium helveticum; trna=trnM; gbac=NC_008372; taxid=55999; genus_name=Stigeoclonium; rank=species; genus=55998; species=55999; distance=1; Stigeoclonium helveticum chloroplast, complete genome. -tgcctgcttagctcagttggttagagcatccgtttcatacgcgggatgtcactagttcaa -gtctagtagtaggcaa ->trnfM count=1; merged_taxid={126431: 1}; species_name=Jasminum nudiflorum; family=4144; family_name=Oleaceae; scientific_name=Jasminum nudiflorum; trna=trnfM; gbac=NC_008407; taxid=126431; genus_name=Jasminum; rank=species; genus=4147; species=126431; distance=1; Jasminum nudiflorum chloroplast, complete genome. -gggcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacaggttcaa -atcccgtctccgcact ->trnI count=3; merged_taxid={253189: 1, 126431: 2}; species_name=###; family=-1; distance=0; scientific_name=Pentapetalae; trna=trnI; taxid=1437201; genus_name=###; family_name=###; rank=no rank; genus=-1; species=-1; Jasminum nudiflorum chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcgaattcgtaggttcaat -tcctactggatgca ->trnfM count=1; merged_taxid={4031: 1}; species_name=Pelargonium x hortorum; family=4027; family_name=Geraniaceae; scientific_name=Pelargonium x hortorum; trna=trnfM; gbac=NC_008454; taxid=4031; genus_name=Pelargonium; rank=species; genus=4030; species=4031; distance=0; Pelargonium x hortorum chloroplast, complete genome. -ggcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtcttcgcac ->trnM count=1; merged_taxid={4031: 1}; species_name=Pelargonium x hortorum; family=4027; family_name=Geraniaceae; scientific_name=Pelargonium x hortorum; trna=trnM; gbac=NC_008454; taxid=4031; genus_name=Pelargonium; rank=species; genus=4030; species=4031; distance=0; Pelargonium x hortorum chloroplast, complete genome. -gcctacttaactcagtggttagagtattgctttcatacggcaggagtcgttggttcaaat -ccaatagtaggca ->trnfM count=2; merged_taxid={4031: 2}; species_name=Pelargonium x hortorum; family=4027; distance=2; scientific_name=Pelargonium x hortorum; trna=trnfM; gbac=NC_008454; taxid=4031; genus_name=Pelargonium; family_name=Geraniaceae; rank=species; genus=4030; species=4031; Pelargonium x hortorum chloroplast, complete genome. -ggcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtcttcgcaccc ->trnfM count=6; merged_taxid={4129: 1, 226051: 1, 476139: 1, 13007: 1, 692148: 1, 398741: 1}; species_name=###; family=-1; distance=1; scientific_name=Mesangiospermae; trna=trnfM; taxid=1437183; genus_name=###; family_name=###; rank=no rank; genus=-1; species=-1; Piper cenocladum chloroplast, complete genome. -cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacaggttcaaa -tcctgtctccgcaac ->trnM count=1; merged_taxid={398741: 1}; species_name=Piper cenocladum; family=16739; family_name=Piperaceae; scientific_name=Piper cenocladum; trna=trnM; gbac=NC_008457; taxid=398741; genus_name=Piper; rank=species; genus=13215; species=398741; distance=1; Piper cenocladum chloroplast, complete genome. -acctacttaactcagcggttagagtattgctttcatacggcagaagtcattggttcaaat -ccaatagtaggtac ->trnM count=5; merged_taxid={85856: 1, 160538: 1, 334596: 1, 93213: 1, 1264566: 1}; species_name=###; family=-1; family_name=###; scientific_name=Mesangiospermae; trna=trnM; taxid=1437183; genus_name=###; rank=no rank; genus=-1; species=-1; Ranunculus macranthus chloroplast, complete genome. -acctacttaacccagtggttagagtattgctttcatacggcaggagtcattggttcaaat -ccaatagtaggta ->trnI count=4; merged_taxid={13601: 2, 334596: 2}; species_name=###; family=-1; distance=0; scientific_name=Ranunculales; trna=trnI; taxid=41768; genus_name=###; family_name=###; rank=order; genus=-1; species=-1; Ranunculus macranthus chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcaaattcgtaggttcaat -tcctgctggatgca ->trnI count=1; merged_taxid={3144: 1}; species_name=Chlorokybus atmophyticus; family=3142; family_name=Chlorokybaceae; scientific_name=Chlorokybus atmophyticus; trna=trnI; gbac=NC_008822; taxid=3144; genus_name=Chlorokybus; rank=species; genus=3143; species=3144; distance=2; Chlorokybus atmophyticus chloroplast, complete genome. -tgcatctatggccaagtggttaaggcaatcgactcataatcgatttatcgctggttcaaa -tccagctagatgcatc ->trnfM count=1; merged_taxid={3885: 1}; species_name=Phaseolus vulgaris; family=3803; family_name=Fabaceae; scientific_name=Phaseolus vulgaris; trna=trnfM; gbac=NC_009259; taxid=3885; genus_name=Phaseolus; rank=species; genus=3883; species=3885; distance=3; Phaseolus vulgaris chloroplast, complete genome. -cgcggagtagagcaacttggtagctcgcaaggctcataaccttgaagttacgggttcaaa -tcccgtctccgcaac ->trnfM count=9; merged_taxid={91146: 1, 434059: 1, 40716: 1, 904691: 1, 72657: 1, 13715: 1, 49684: 1, 4407: 1, 50458: 1}; species_name=###; family=-1; family_name=###; scientific_name=eudicotyledons; trna=trnfM; taxid=71240; genus_name=###; rank=no rank; genus=-1; species=-1; Aethionema cordifolium chloroplast, complete genome. -cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcaac ->trnM count=3; merged_taxid={51239: 1, 13006: 1, 13007: 1}; species_name=###; family=-1; distance=0; scientific_name=Mesangiospermae; trna=trnM; taxid=1437183; genus_name=###; family_name=###; rank=no rank; genus=-1; species=-1; Chloranthus spicatus chloroplast, complete genome. -acctacttaacccagcggttagagtattgctttcatacggcaggagtcattggttcaaat -ccaatagtaggta ->trnM count=1; merged_taxid={153571: 1}; species_name=Buxus microphylla; family=4000; family_name=Buxaceae; scientific_name=Buxus microphylla; trna=trnM; gbac=NC_009599; taxid=153571; genus_name=Buxus; rank=species; genus=4001; species=153571; distance=0; Buxus microphylla chloroplast, complete genome. -acctacttaacccagcggttagagtattgctttcatacggcgggagtcattggttcaaat -ccaatagtaggta ->trnfM count=1; merged_taxid={145286: 1}; species_name=Illicium oligandrum; family=16733; family_name=Schisandraceae; scientific_name=Illicium oligandrum; trna=trnfM; gbac=NC_009600; taxid=145286; genus_name=Illicium; rank=species; genus=13097; species=145286; distance=2; Illicium oligandrum chloroplast, complete genome. -cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcaacc ->trnM count=1; merged_taxid={145286: 1}; species_name=Illicium oligandrum; family=16733; family_name=Schisandraceae; scientific_name=Illicium oligandrum; trna=trnM; gbac=NC_009600; taxid=145286; genus_name=Illicium; rank=species; genus=13097; species=145286; distance=0; Illicium oligandrum chloroplast, complete genome. -acctacttaacccagtggttagagtattgctttcatacggcaagagtcattggttcaaat -ccaatagtaggta ->trnI count=1; merged_taxid={145286: 1}; species_name=Illicium oligandrum; family=16733; family_name=Schisandraceae; scientific_name=Illicium oligandrum; trna=trnI; gbac=NC_009600; taxid=145286; genus_name=Illicium; rank=species; genus=13097; species=145286; distance=1; Illicium oligandrum chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcgaattcgtgggttcaat -tcctgctggatgcac ->trnfM count=2; merged_taxid={55577: 1, 145284: 1}; species_name=###; family=4671; distance=0; scientific_name=Dioscorea; trna=trnfM; taxid=4672; genus_name=Dioscorea; family_name=Dioscoreaceae; rank=genus; genus=4672; species=-1; Dioscorea elephantipes chloroplast, complete genome. -cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggttacaggttcaaa -tcctgtctccgcaa ->trnM count=1; merged_taxid={145284: 1}; species_name=Dioscorea elephantipes; family=4671; family_name=Dioscoreaceae; scientific_name=Dioscorea elephantipes; trna=trnM; gbac=NC_009601; taxid=145284; genus_name=Dioscorea; rank=species; genus=4672; species=145284; distance=1; Dioscorea elephantipes chloroplast, complete genome. -acctacttaactcagtggttagagtattgctttcatacggcggaagtcattggttcaaat -ccaatagtaggtac ->trnfM count=1; merged_taxid={54799: 1}; species_name=Cycas taitungensis; family=3394; family_name=Cycadaceae; scientific_name=Cycas taitungensis; trna=trnfM; gbac=NC_009618; taxid=54799; genus_name=Cycas; rank=species; genus=3395; species=54799; distance=0; Cycas taitungensis chloroplast, complete genome. -tgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcca ->trnI count=5; merged_taxid={171009: 1, 34343: 1, 13365: 1, 42329: 1, 54799: 1}; species_name=###; family=-1; distance=1; scientific_name=Cycadales; trna=trnI; taxid=3297; genus_name=###; family_name=###; rank=order; genus=-1; species=-1; Cycas taitungensis chloroplast, complete genome. -gcatccatggctgaacggttaaagcgcccaactcataattggcgaattcgcaggttcaat -tcctgctggatgcac ->trnI count=1; merged_taxid={34116: 1}; species_name=Leptosira terrestris; family=37386; family_name=Ctenocladaceae; scientific_name=Leptosira terrestris; trna=trnI; gbac=NC_009681; taxid=34116; genus_name=Leptosira; rank=species; genus=37387; species=34116; distance=1; Leptosira terrestris chloroplast, complete genome. -tgcatgcatggctgagtggtcgatagcaacagactcataatctgtctccgttaggacatc -acaggttcaaaccctgttgcatgcaa ->trnM count=1; merged_taxid={34116: 1}; species_name=Leptosira terrestris; family=37386; family_name=Ctenocladaceae; scientific_name=Leptosira terrestris; trna=trnM; gbac=NC_009681; taxid=34116; genus_name=Leptosira; rank=species; genus=37387; species=34116; distance=0; Leptosira terrestris chloroplast, complete genome. -gcctacttagctcagttggttagagcgtccgtctcatacgcggaatgtcactagttcaaa -tctagtagtgggta ->trnfM count=2; merged_taxid={437280: 1, 35886: 1}; species_name=###; family=4118; distance=2; scientific_name=Cuscuta; trna=trnfM; taxid=4128; genus_name=Cuscuta; family_name=Convolvulaceae; rank=genus; genus=4128; species=-1; Cuscuta gronovii chloroplast, complete genome. -agcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcaacc ->trnM count=2; merged_taxid={437280: 1, 35886: 1}; species_name=###; family=4118; distance=0; scientific_name=Cuscuta; trna=trnM; taxid=4128; genus_name=Cuscuta; family_name=Convolvulaceae; rank=genus; genus=4128; species=-1; Cuscuta gronovii chloroplast, complete genome. -atctacttaactcagtggttagagtactgctttcatacggcgggagtcattggttcaaat -ccaatagtagatc ->trnI count=4; merged_taxid={437280: 2, 35886: 2}; species_name=###; family=4118; distance=1; scientific_name=Cuscuta; trna=trnI; taxid=4128; genus_name=Cuscuta; family_name=Convolvulaceae; rank=genus; genus=4128; species=-1; Cuscuta gronovii chloroplast, complete genome. -gcatccatggctaagtggttaaagcgcccaactcataattggcgaagtcgtaggttcaat -tcctactggatgcac ->trnM count=2; merged_taxid={4129: 1, 476139: 1}; species_name=###; family=4118; distance=1; scientific_name=Cuscuta; trna=trnM; taxid=4128; genus_name=Cuscuta; family_name=Convolvulaceae; rank=genus; genus=4128; species=-1; Cuscuta reflexa chloroplast, complete genome. -tacctacttaactcagtggttagagtactgctttcatacggcgggaggcattggttcaaa -tccaatagtaggtag ->trnI count=1; merged_taxid={4129: 1}; species_name=Cuscuta reflexa; family=4118; family_name=Convolvulaceae; scientific_name=Cuscuta reflexa; trna=trnI; gbac=NC_009766; taxid=4129; genus_name=Cuscuta; rank=species; genus=4128; species=4129; distance=0; Cuscuta reflexa chloroplast, complete genome. -gcatccatggctaagcggttaaagcgcccaactcataattggtgaagtcgtaggttcaat -tcctactggatgca ->trnM count=2; merged_taxid={4120: 1, 4121: 1}; species_name=###; family=4118; distance=0; scientific_name=Ipomoea; trna=trnM; taxid=4119; genus_name=Ipomoea; family_name=Convolvulaceae; rank=genus; genus=4119; species=-1; Ipomoea purpurea chloroplast, complete genome. -acctacttaactcagtggttagagtaccgctttcatacggcgggagtcattggttcaaat -ccaatagtaggta ->trnI count=4; merged_taxid={4120: 2, 4121: 2}; species_name=###; family=4118; distance=1; scientific_name=Ipomoea; trna=trnI; taxid=4119; genus_name=Ipomoea; family_name=Convolvulaceae; rank=genus; genus=4119; species=-1; Ipomoea purpurea chloroplast, complete genome. -gcatccatggctgagtggtgaaagcgcccaactcataattggcgaagtcgtaggttcaat -tcctactggatgcac ->trnI count=1; merged_taxid={476139: 1}; species_name=Cuscuta exaltata; family=4118; family_name=Convolvulaceae; scientific_name=Cuscuta exaltata; trna=trnI; gbac=NC_009963; taxid=476139; genus_name=Cuscuta; rank=species; genus=4128; species=476139; distance=0; Cuscuta exaltata chloroplast, complete genome. -gcatccatggctaagtggttaaagcgcccaactcataattggtgaagtcgtaggttcaat -tcctactggatgca ->trnfM count=41; merged_taxid={125444: 1, 4615: 1, 4460: 1, 141207: 1, 29656: 1, 142615: 1, 136219: 1, 1605147: 1, 292647: 1, 451881: 1, 1564205: 1, 145710: 1, 53042: 1, 59062: 1, 244023: 1, 1324860: 1, 459585: 1, 200642: 1, 459588: 1, 459589: 1, 13894: 1, 4679: 1, 459594: 1, 154679: 1, 53069: 1, 995793: 1, 162386: 1, 228183: 1, 161112: 1, 131289: 1, 112603: 1, 256348: 1, 161126: 1, 112615: 1, 78828: 1, 53104: 1, 51953: 1, 4472: 1, 108411: 1, 4733: 1, 1276543: 1}; species_name=###; family=-1; distance=1; scientific_name=Liliopsida; trna=trnfM; taxid=4447; genus_name=###; family_name=###; rank=class; genus=-1; species=-1; Lemna minor chloroplast, complete genome. -cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcaac ->trnI count=4; merged_taxid={4472: 2, 226208: 2}; species_name=###; family=-1; distance=1; scientific_name=Mesangiospermae; trna=trnI; taxid=1437183; genus_name=###; family_name=###; rank=no rank; genus=-1; species=-1; Lemna minor chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcaaattcgtaggttcaat -tcctactggatgcac ->trnfM count=5; merged_taxid={482428: 1, 3940: 2, 482429: 1, 3942: 1}; species_name=###; family=3934; distance=2; scientific_name=Oenothera; trna=trnfM; taxid=3939; genus_name=Oenothera; family_name=Onagraceae; rank=genus; genus=3939; species=-1; Oenothera argillicola chloroplast, complete genome. -cgcggggtagagcagattggtagctcgcaaggctcataaccttgaggtcatgggttcgaa -tcccgtccccgcaccc ->trnfM count=1; merged_taxid={280810: 1}; species_name=Aneura mirabilis; family=39024; family_name=Aneuraceae; scientific_name=Aneura mirabilis; trna=trnfM; gbac=NC_010359; taxid=280810; genus_name=Aneura; rank=species; genus=70217; species=280810; distance=0; Aneura mirabilis chloroplast, complete genome. -cgcggggtagagcggtttggtagctcgcaaggctcataaccttgaggtcataggttcgaa -tcctgtctccgcca ->trnM count=1; merged_taxid={280810: 1}; species_name=Aneura mirabilis; family=39024; family_name=Aneuraceae; scientific_name=Aneura mirabilis; trna=trnM; gbac=NC_010359; taxid=280810; genus_name=Aneura; rank=species; genus=70217; species=280810; distance=1; Aneura mirabilis chloroplast, complete genome. -gcctacttaactcagtggttggagtatcgcttccatacggcgagagtcattggttcgaat -ccaatagtaggtcc ->trnI count=1; merged_taxid={280810: 1}; species_name=Aneura mirabilis; family=39024; family_name=Aneuraceae; scientific_name=Aneura mirabilis; trna=trnI; gbac=NC_010359; taxid=280810; genus_name=Aneura; rank=species; genus=70217; species=280810; distance=1; Aneura mirabilis chloroplast, complete genome. -gcattcatggctgaatggttaaggcacccaactcataattggcgaactcacaggttcaat -tcctgttgaatgcac ->trnfM count=3; merged_taxid={482428: 1, 482429: 1, 3942: 1}; species_name=###; family=3934; distance=2; scientific_name=Oenothera; trna=trnfM; taxid=3939; genus_name=Oenothera; family_name=Onagraceae; rank=genus; genus=3939; species=-1; Oenothera glazioviana chloroplast, complete genome. -cgcggggtagagcagattggtagctcgcaaggctcataaccttgaggtcatgggttcaaa -tcccgtccccgcaccc ->trnfM count=1; merged_taxid={3983: 1}; species_name=Manihot esculenta; family=3977; family_name=Euphorbiaceae; scientific_name=Manihot esculenta; trna=trnfM; gbac=NC_010433; taxid=3983; genus_name=Manihot; rank=species; genus=3982; species=3983; distance=1; Manihot esculenta chloroplast, complete genome. -cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaagtcacgggttcaaa -tcccgtctccgcaac ->trnM count=1; merged_taxid={3983: 1}; species_name=Manihot esculenta; family=3977; family_name=Euphorbiaceae; scientific_name=Manihot esculenta; trna=trnM; gbac=NC_010433; taxid=3983; genus_name=Manihot; rank=species; genus=3982; species=3983; distance=1; Manihot esculenta chloroplast, complete genome. -acctacttaactcagtggttagagtattgctttcatacggcgatagtcattggttcaaat -ccaatagtaggta ->trnfM count=3; merged_taxid={103032: 1, 989334: 1, 28494: 1}; species_name=###; family=4381; distance=0; scientific_name=Campanulaceae; trna=trnfM; taxid=4381; genus_name=###; family_name=Campanulaceae; rank=family; genus=-1; species=-1; Trachelium caeruleum chloroplast, complete genome. -cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcaccggttcaaa -tccggtctccgcaa ->trnI count=1; merged_taxid={28494: 1}; species_name=Trachelium caeruleum; family=4381; family_name=Campanulaceae; scientific_name=Trachelium caeruleum; trna=trnI; gbac=NC_010442; taxid=28494; genus_name=Trachelium; rank=species; genus=16464; species=28494; distance=1; Trachelium caeruleum chloroplast, complete genome. -gcattcatggctgaatggttaaagcacccaactcataattggcgaattcgtaggttcaat -tcctactggatgcac ->trnfM count=1; merged_taxid={3377: 1}; species_name=Welwitschia mirabilis; family=3375; family_name=Welwitschiaceae; scientific_name=Welwitschia mirabilis; trna=trnfM; gbac=NC_010654; taxid=3377; genus_name=Welwitschia; rank=species; genus=3376; species=3377; distance=2; Welwitschia mirabilis chloroplast, complete genome. -tgcggagtagagtagtctggtagctcgcaaggctcatacccttgaggtcacgggttcaaa -tcccgtcttcgcgt ->trnM count=7; merged_taxid={41568: 1, 49763: 1, 669134: 1, 395280: 1, 3377: 1, 146995: 1, 531291: 1}; species_name=###; family=-1; family_name=###; scientific_name=Tracheophyta; trna=trnM; taxid=58023; genus_name=###; rank=no rank; genus=-1; species=-1; Welwitschia mirabilis chloroplast, complete genome. -acctacttaactcagcggttagagtatcgctttcatacggcgagagtcattggttcaaat -ccaatagtaggta ->trnI count=2; merged_taxid={3377: 2}; species_name=Welwitschia mirabilis; family=3375; distance=1; scientific_name=Welwitschia mirabilis; trna=trnI; gbac=NC_010654; taxid=3377; genus_name=Welwitschia; family_name=Welwitschiaceae; rank=species; genus=3376; species=3377; Welwitschia mirabilis chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcgaactcgcaggttcaat -tcctgctggatgcac ->trnM count=7; merged_taxid={1454370: 1, 49827: 1, 1265925: 1, 39855: 1, 50452: 1, 180217: 1, 3899: 1}; species_name=###; family=-1; family_name=###; scientific_name=Pentapetalae; trna=trnM; taxid=1437201; genus_name=###; rank=no rank; genus=-1; species=-1; Fagopyrum esculentum subsp. ancestrale chloroplast, complete genome. -acctacttaactcagcggttagagtattgctttcatacggcaggagtcattggttcaaat -ccaatagtaggta ->trnI count=1; merged_taxid={55995: 1}; species_name=Oedogonium cardiacum; family=-1; family_name=###; scientific_name=Oedogonium cardiacum; trna=trnI; gbac=NC_011031; taxid=55995; genus_name=Oedogonium; rank=species; genus=55993; species=55995; distance=0; Oedogonium cardiacum chloroplast, complete genome. -gcacttttggccgagcggtttaggcaatcgactcataatcgattttaggtgggttcaact -cctacaaggtgca ->trnM count=1; merged_taxid={55995: 1}; species_name=Oedogonium cardiacum; family=-1; family_name=###; scientific_name=Oedogonium cardiacum; trna=trnM; gbac=NC_011031; taxid=55995; genus_name=Oedogonium; rank=species; genus=55993; species=55995; distance=0; Oedogonium cardiacum chloroplast, complete genome. -gcctgtttagctcagttggtcagagcatccgtttcatacgcgggatgtcactagttcaaa -tctagtaacaggca ->trnM count=3; merged_taxid={3329: 1, 3332: 1, 93926: 1}; species_name=###; family=3318; distance=0; scientific_name=Picea; trna=trnM; taxid=3328; genus_name=Picea; family_name=Pinaceae; rank=genus; genus=3328; species=-1; Picea sitchensis chloroplast, complete genome. -acccacttaactcagtggttagagtatcgctttcatacggcgagagtcgttggttcaaat -ccaatagtaggta ->trnI count=6; merged_taxid={3329: 2, 3332: 2, 93926: 2}; species_name=###; family=3318; distance=0; scientific_name=Picea; trna=trnI; taxid=3328; genus_name=Picea; family_name=Pinaceae; rank=genus; genus=3328; species=-1; Picea sitchensis chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggtgaactcgcgggttcaat -tcctgctggatgca ->trnfM count=1; merged_taxid={3332: 1}; species_name=Picea sitchensis; family=3318; family_name=Pinaceae; scientific_name=Picea sitchensis; trna=trnfM; gbac=NC_011152; taxid=3332; genus_name=Picea; rank=species; genus=3328; species=3332; distance=0; Picea sitchensis chloroplast, complete genome. -tgcggagtagagtagtctggtagctcgcaaggctcataaccttgaggtcacgggtcaaat -cccgtctccgcca ->trnM count=17; merged_taxid={50176: 1, 1505646: 1, 151562: 1, 3339: 1, 36012: 1, 3342: 1, 3343: 1, 71632: 1, 28977: 1, 97170: 1, 3348: 1, 64686: 1, 3352: 1, 88730: 1, 71643: 1, 71402: 1, 1030197: 1}; species_name=###; family=-1; distance=0; scientific_name=Pinidae; trna=trnM; taxid=3313; genus_name=###; family_name=###; rank=subclass; genus=-1; species=-1; Pinus contorta chloroplast, complete genome. -acccacttaactcagtggttagagtatcgctttcatacggcgagagtcattggttcaaat -ccaatagtaggta ->trnI count=5; merged_taxid={361940: 2, 3827: 1, 3900: 2}; species_name=###; family=3803; distance=1; scientific_name=Papilionoideae; trna=trnI; taxid=3814; genus_name=###; family_name=Fabaceae; rank=subfamily; genus=-1; species=-1; Cicer arietinum chloroplast, complete genome. -gcatccatggctgaatggttaaagcacccaactcataattggcgaagtcgtaggttcaat -tcctactggatgcac ->trnfM count=1; merged_taxid={3900: 1}; species_name=Trifolium subterraneum; family=3803; family_name=Fabaceae; scientific_name=Trifolium subterraneum; trna=trnfM; gbac=NC_011828; taxid=3900; genus_name=Trifolium; rank=species; genus=3898; species=3900; distance=1; Trifolium subterraneum chloroplast, complete genome. -agcggggtagagcagcttggtagctcgtaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcaac ->trnI count=4; merged_taxid={3322: 2, 3324: 2}; species_name=###; family=3318; distance=0; scientific_name=Pinaceae; trna=trnI; taxid=3318; genus_name=###; family_name=Pinaceae; rank=family; genus=-1; species=-1; Keteleeria davidiana chloroplast, complete genome. -gcatccatggctgaatggttaaagcacccaactcataattggcgaactcgcgggttcaat -tcctgctggatgca ->trnfM count=1; merged_taxid={3324: 1}; species_name=Keteleeria davidiana; family=3318; family_name=Pinaceae; scientific_name=Keteleeria davidiana; trna=trnfM; gbac=NC_011930; taxid=3324; genus_name=Keteleeria; rank=species; genus=3323; species=3324; distance=0; Keteleeria davidiana chloroplast, complete genome. -tgcggagtaaagtagtctggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcca ->trnfM count=3; merged_taxid={33153: 1, 3381: 1, 3382: 1}; species_name=###; family=3379; distance=0; scientific_name=Gnetum; trna=trnfM; taxid=3380; genus_name=Gnetum; family_name=Gnetaceae; rank=genus; genus=3380; species=-1; Gnetum parvifolium chloroplast, complete genome. -cgcggagtagagtagtctggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcta ->trnI count=7; merged_taxid={173280: 2, 33153: 1, 3381: 2, 3382: 2}; species_name=###; family=-1; distance=1; scientific_name=Gnetidae; trna=trnI; taxid=1445966; genus_name=###; family_name=###; rank=subclass; genus=-1; species=-1; Gnetum parvifolium chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcgaactcgcgggttcaat -tcctgctggatgcac ->trnI count=1; merged_taxid={33153: 1}; species_name=Gnetum parvifolium; family=3379; family_name=Gnetaceae; scientific_name=Gnetum parvifolium; trna=trnI; gbac=NC_011942; taxid=33153; genus_name=Gnetum; rank=species; genus=3380; species=33153; distance=1; Gnetum parvifolium chloroplast, complete genome. -gcatccatggctgaatgggtaaagcgcccaactcataattggcgaactcgcggggttcaa -ttcctggctggatgcac ->trnfM count=1; merged_taxid={173280: 1}; species_name=Ephedra equisetina; family=3386; family_name=Ephedraceae; scientific_name=Ephedra equisetina; trna=trnfM; gbac=NC_011954; taxid=173280; genus_name=Ephedra; rank=species; genus=3387; species=173280; distance=0; Ephedra equisetina chloroplast, complete genome. -cgcggagtagagtagcctggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcca ->trnM count=1; merged_taxid={38588: 1}; species_name=Syntrichia ruralis; family=38586; family_name=Pottiaceae; scientific_name=Syntrichia ruralis; trna=trnM; gbac=NC_012052; taxid=38588; genus_name=Syntrichia; rank=species; genus=200749; species=38588; distance=1; Syntrichia ruralis chloroplast, complete genome. -gcctgcttaactcagtggtttagagtgtcgctttcatacggcgagagtcattggttcaaa -tccaatagtaggta ->trnfM count=1; merged_taxid={38588: 1}; species_name=Syntrichia ruralis; family=38586; family_name=Pottiaceae; scientific_name=Syntrichia ruralis; trna=trnfM; gbac=NC_012052; taxid=38588; genus_name=Syntrichia; rank=species; genus=200749; species=38588; distance=3; Syntrichia ruralis chloroplast, complete genome. -tcgcggggtagagcagcctggtagctcgcaaggctcataaccttgaggtcatgggttcaa -atcccgtctccgctaa ->trnM count=1; merged_taxid={41880: 1}; species_name=Pycnococcus provasolii; family=41878; family_name=Pycnococcaceae; scientific_name=Pycnococcus provasolii; trna=trnM; gbac=NC_012097; taxid=41880; genus_name=Pycnococcus; rank=species; genus=41879; species=41880; distance=1; Pycnococcus provasolii chloroplast, complete genome. -tgcctgcttagctcagtggtagagcgtccgtctcatacgcggcttgtcactagttcgaat -ctagtagcaggcaa ->trnI count=1; merged_taxid={36894: 1}; species_name=Pyramimonas parkeae; family=-1; family_name=###; scientific_name=Pyramimonas parkeae; trna=trnI; gbac=NC_012099; taxid=36894; genus_name=Pyramimonas; rank=species; genus=36882; species=36894; distance=1; Pyramimonas parkeae chloroplast, complete genome. -tgcatctatggccgagtggacgatggctcgtgactcataatctcgcttcgaaagaacagc -gctggttcgaatccagctggatgcaa ->trnI count=1; merged_taxid={141716: 1}; species_name=Monomastix sp. OKE-1; family=1525215; family_name=Monomastigaceae; scientific_name=Monomastix sp. OKE-1; trna=trnI; gbac=NC_012101; taxid=141716; genus_name=Monomastix; rank=species; genus=141715; species=141716; distance=0; Monomastix sp. OKE-1 chloroplast, complete genome. -gtatatatggcggagtggcagaacgcataggcctcataagcctcttcgataatttatcga -catcgcaggttcgaatcctgctatatgca ->trnfM count=1; merged_taxid={180498: 1}; species_name=Jatropha curcas; family=3977; family_name=Euphorbiaceae; scientific_name=Jatropha curcas; trna=trnfM; gbac=NC_012224; taxid=180498; genus_name=Jatropha; rank=species; genus=3995; species=180498; distance=1; Jatropha curcas chloroplast, complete genome. -cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaagtcacgggttcaaa -tcctgtctccgcaac ->trnM count=1; merged_taxid={204586: 1}; species_name=Alsophila spinulosa; family=29635; family_name=Cyatheaceae; scientific_name=Alsophila spinulosa; trna=trnM; gbac=NC_012818; taxid=204586; genus_name=Alsophila; rank=species; genus=86337; species=204586; distance=0; Alsophila spinulosa chloroplast, complete genome. -gcctacttaactcagcggttagagtatcgctttcatacggcgagaggcattggttcgaat -ccaatagtaggta ->trnM count=3; merged_taxid={3074: 2, 91190: 1}; species_name=###; family=-1; distance=0; scientific_name=Trebouxiophyceae; trna=trnM; taxid=75966; genus_name=###; family_name=###; rank=class; genus=-1; species=-1; Parachlorella kessleri chloroplast, complete genome. -gcctgcttagctcagttggtcagagcgtccgtctcatacgcggaatgtcactagttcaaa -tctagtagcaggca ->trnI count=2; merged_taxid={3074: 2}; species_name=Parachlorella kessleri; family=-1; distance=1; scientific_name=Parachlorella kessleri; trna=trnI; gbac=NC_012978; taxid=3074; genus_name=Parachlorella; family_name=###; rank=species; genus=247501; species=3074; Parachlorella kessleri chloroplast, complete genome. -tgcatccgtggcagagtggtcgattgcaccgcactcataatgcggctccgaaaggacatc -gttggttcaagtccaaccggatgcaa ->trnM count=1; merged_taxid={88036: 1}; species_name=Selaginella moellendorffii; family=3245; family_name=Selaginellaceae; scientific_name=Selaginella moellendorffii; trna=trnM; gbac=NC_013086; taxid=88036; genus_name=Selaginella; rank=species; genus=3246; species=88036; distance=1; Selaginella moellendorffii plastid, complete genome. -acctacttaactcagcggtcagagtatcgctttcatacggcgagggtcattggttcgaat -ccaatagtaggta ->trnM count=2; merged_taxid={4733: 1, 175694: 1}; species_name=###; family=-1; family_name=###; scientific_name=Mesangiospermae; trna=trnM; taxid=1437183; genus_name=###; rank=no rank; genus=-1; species=-1; Typha latifolia chloroplast, complete genome. -tacctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaa -tccaatagtaggtag ->trnM count=3; merged_taxid={3914: 1, 3917: 1, 157791: 1}; species_name=###; family=3803; family_name=Fabaceae; scientific_name=Vigna; trna=trnM; taxid=3913; genus_name=Vigna; rank=genus; genus=3913; species=-1; Vigna radiata chloroplast, complete genome. -tacctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaa -tccaatagtaggtaa ->trnfM count=3; merged_taxid={3914: 1, 3917: 1, 157791: 1}; species_name=###; family=3803; distance=1; scientific_name=Vigna; trna=trnfM; taxid=3913; genus_name=Vigna; family_name=Fabaceae; rank=genus; genus=3913; species=-1; Vigna radiata chloroplast, complete genome. -cgcggagtagagcaacttggtagctcgcaaggctcataaccttgaggttacgggttcaaa -tcccgtctccgcaac ->trnI count=1; merged_taxid={3888: 1}; species_name=Pisum sativum; family=3803; family_name=Fabaceae; scientific_name=Pisum sativum; trna=trnI; gbac=NC_014057; taxid=3888; genus_name=Pisum; rank=species; genus=3887; species=3888; distance=0; Pisum sativum chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggagaagtcgtaggttcaat -tcctactggatgca ->trnfM count=1; merged_taxid={3888: 1}; species_name=Pisum sativum; family=3803; family_name=Fabaceae; scientific_name=Pisum sativum; trna=trnfM; gbac=NC_014057; taxid=3888; genus_name=Pisum; rank=species; genus=3887; species=3888; distance=2; Pisum sativum chloroplast, complete genome. -cgcggagtagagcaacttggtagctcgcaaggctcataaccttgaggttacgggttcaaa -tcccgtctccgcacc ->trnfM count=1; merged_taxid={38684: 1}; species_name=Anomochloa marantoidea; family=4479; family_name=Poaceae; scientific_name=Anomochloa marantoidea; trna=trnfM; gbac=NC_014062; taxid=38684; genus_name=Anomochloa; rank=species; genus=38683; species=38684; distance=2; Anomochloa marantoidea chloroplast, complete genome. -agcggagtagagcagtttggtagctcgcgaggctcataaccttgaggtcacgggttcgat -tcccgtctccgcta ->trnM count=1; merged_taxid={38684: 1}; species_name=Anomochloa marantoidea; family=4479; family_name=Poaceae; scientific_name=Anomochloa marantoidea; trna=trnM; gbac=NC_014062; taxid=38684; genus_name=Anomochloa; rank=species; genus=38683; species=38684; distance=1; Anomochloa marantoidea chloroplast, complete genome. -tgcctacttaactcagtggttagagtattgctttcatacggcgagagtcattggttcaaa -tccaatagtaggtag ->trnfM count=1; merged_taxid={3860: 1}; species_name=Lathyrus sativus; family=3803; family_name=Fabaceae; scientific_name=Lathyrus sativus; trna=trnfM; gbac=NC_014063; taxid=3860; genus_name=Lathyrus; rank=species; genus=3853; species=3860; distance=2; Lathyrus sativus chloroplast, complete genome. -ggcggagtggagcaacttggtagctcgcaaggctcataaccttgaggttacgggttcaaa -tcctgtctccgcacc ->trnI count=1; merged_taxid={3860: 1}; species_name=Lathyrus sativus; family=3803; family_name=Fabaceae; scientific_name=Lathyrus sativus; trna=trnI; gbac=NC_014063; taxid=3860; genus_name=Lathyrus; rank=species; genus=3853; species=3860; distance=0; Lathyrus sativus chloroplast, complete genome. -gcatccatggctgagtggttaaagcacccaactcataattggcgaagtcgtgggttcaat -tcctactggatgca ->trnI count=1; merged_taxid={51328: 1}; species_name=Floydiella terrestris; family=51326; family_name=Chaetopeltidaceae; scientific_name=Floydiella terrestris; trna=trnI; gbac=NC_014346; taxid=51328; genus_name=Floydiella; rank=species; genus=304582; species=51328; distance=0; Floydiella terrestris chloroplast, complete genome. -gcactctaggccgaccggtgaggcacccgactcataatcggatttaggcgggtccgactc -ccgcagggtgca ->trnM count=1; merged_taxid={51328: 1}; species_name=Floydiella terrestris; family=51326; family_name=Chaetopeltidaceae; scientific_name=Floydiella terrestris; trna=trnM; gbac=NC_014346; taxid=51328; genus_name=Floydiella; rank=species; genus=304582; species=51328; distance=1; Floydiella terrestris chloroplast, complete genome. -gcctgcttagctcagtggttagagcacccgtttcatacgcggggtgtcactagttcaact -ctagtagcaggcac ->trnM count=1; merged_taxid={104588: 1}; species_name=Pteridium aquilinum; family=32084; family_name=Dennstaedtiaceae; scientific_name=Pteridium aquilinum subsp. aquilinum; trna=trnM; gbac=NC_014348; taxid=104588; genus_name=Pteridium; rank=subspecies; genus=32100; species=32101; distance=0; Pteridium aquilinum subsp. aquilinum chloroplast, complete genome. -gcctacttgactcagcggttagagtatcgctttcatacggcgacagtcattggttcgaat -ccaatagtaggta ->trnM count=10; merged_taxid={28960: 1, 337410: 1, 38596: 1, 166117: 1, 326026: 1, 519533: 1, 163694: 1, 337360: 1, 57655: 1, 40888: 1}; species_name=###; family=-1; family_name=###; scientific_name=Pentapetalae; trna=trnM; taxid=1437201; genus_name=###; rank=no rank; genus=-1; species=-1; Erodium texanum plastid, complete genome. -gcctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaat -ccaatagtaggta ->trnfM count=1; merged_taxid={28960: 1}; species_name=Erodium texanum; family=4027; family_name=Geraniaceae; scientific_name=Erodium texanum; trna=trnfM; gbac=NC_014569; taxid=28960; genus_name=Erodium; rank=species; genus=21555; species=28960; distance=1; Erodium texanum plastid, complete genome. -cgcggagtagagcagtttggtagttcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcaac ->trnfM count=1; merged_taxid={28960: 1}; species_name=Erodium texanum; family=4027; family_name=Geraniaceae; scientific_name=Erodium texanum; trna=trnfM; gbac=NC_014569; taxid=28960; genus_name=Erodium; rank=species; genus=21555; species=28960; distance=1; Erodium texanum plastid, complete genome. -ggcggggtagagcagcttggtagctcgcaaggctcataacctcgaggtcacgggttcaaa -tcccgtccccgcaac ->trnfM count=1; merged_taxid={28960: 1}; species_name=Erodium texanum; family=4027; family_name=Geraniaceae; scientific_name=Erodium texanum; trna=trnfM; gbac=NC_014569; taxid=28960; genus_name=Erodium; rank=species; genus=21555; species=28960; distance=1; Erodium texanum plastid, complete genome. -cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtccccgcaac ->trnI count=1; merged_taxid={326026: 1}; species_name=Geranium palmatum; family=4027; family_name=Geraniaceae; scientific_name=Geranium palmatum; trna=trnI; gbac=NC_014573; taxid=326026; genus_name=Geranium; rank=species; genus=4028; species=326026; distance=1; Geranium palmatum plastid, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggtgaagtcgtaggttcaat -tcctactggatgcac ->trnfM count=1; merged_taxid={326026: 1}; species_name=Geranium palmatum; family=4027; family_name=Geraniaceae; scientific_name=Geranium palmatum; trna=trnfM; gbac=NC_014573; taxid=326026; genus_name=Geranium; rank=species; genus=4028; species=326026; distance=1; Geranium palmatum plastid, complete genome. -cgcggagtagagcagcttggtagctcgcaaggctcatgaccttgaggtcacgggttcaaa -tcccgtcttcgcaac ->trnfM count=1; merged_taxid={3322: 1}; species_name=Cedrus deodara; family=3318; family_name=Pinaceae; scientific_name=Cedrus deodara; trna=trnfM; gbac=NC_014575; taxid=3322; genus_name=Cedrus; rank=species; genus=3321; species=3322; distance=0; Cedrus deodara chloroplast, complete genome. -tgcggagtagagtagtctggtagctcgcaaggctcataaccttgaggtcacgggttcgaa -tcctgtctccgcca ->trnI count=1; merged_taxid={163694: 1}; species_name=Monsonia speciosa; family=4027; family_name=Geraniaceae; scientific_name=Monsonia speciosa; trna=trnI; gbac=NC_014582; taxid=163694; genus_name=Monsonia; rank=species; genus=21556; species=163694; distance=0; Monsonia speciosa plastid, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcgaatttgtaggttcaat -tcctactggatgca ->trnfM count=1; merged_taxid={163694: 1}; species_name=Monsonia speciosa; family=4027; family_name=Geraniaceae; scientific_name=Monsonia speciosa; trna=trnfM; gbac=NC_014582; taxid=163694; genus_name=Monsonia; rank=species; genus=21556; species=163694; distance=1; Monsonia speciosa plastid, complete genome. -tggcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaa -atcccgtccccccaac ->trnfM count=1; merged_taxid={163694: 1}; species_name=Monsonia speciosa; family=4027; family_name=Geraniaceae; scientific_name=Monsonia speciosa; trna=trnfM; gbac=NC_014582; taxid=163694; genus_name=Monsonia; rank=species; genus=21556; species=163694; distance=2; Monsonia speciosa plastid, complete genome. -ggcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtccccgcaacc ->trnfM count=4; merged_taxid={3329: 1, 71402: 1, 93926: 1, 64686: 1}; species_name=###; family=3318; distance=0; scientific_name=Pinaceae; trna=trnfM; taxid=3318; genus_name=###; family_name=Pinaceae; rank=family; genus=-1; species=-1; Cathaya argyrophylla chloroplast, complete genome. -tgcggagtagagtagtctggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcca ->trnfM count=1; merged_taxid={531291: 1}; species_name=Myriopteris lindheimeri; family=13819; family_name=Pteridaceae; scientific_name=Myriopteris lindheimeri; trna=trnfM; gbac=NC_014592; taxid=531291; genus_name=Myriopteris; rank=species; genus=1518990; species=531291; distance=0; Cheilanthes lindheimeri chloroplast, complete genome. -cgcggggtagagcagcttggtagctcgcgaggctcataacctcgaggtcacgggttcaaa -tcccgtctccgcaa ->trnI count=1; merged_taxid={49763: 1}; species_name=Isoetes flaccida; family=13837; family_name=Isoetaceae; scientific_name=Isoetes flaccida; trna=trnI; gbac=NC_014675; taxid=49763; genus_name=Isoetes; rank=species; genus=13838; species=49763; distance=1; Isoetes flaccida chloroplast, complete genome. -gcatccatggctgagtggtcaaagcacccaactcataattggagaattcgcaggttcaat -tcctgctggatgcac ->trnfM count=1; merged_taxid={49763: 1}; species_name=Isoetes flaccida; family=13837; family_name=Isoetaceae; scientific_name=Isoetes flaccida; trna=trnfM; gbac=NC_014675; taxid=49763; genus_name=Isoetes; rank=species; genus=13838; species=49763; distance=0; Isoetes flaccida chloroplast, complete genome. -cgcggggtagagcagcctggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcca ->trnfM count=12; merged_taxid={329890: 1, 1308043: 1, 157670: 1, 101015: 1, 519533: 1, 101007: 1, 3760: 1, 3767: 1, 1143245: 1, 102107: 1, 101020: 1, 64939: 1}; species_name=###; family=3745; distance=1; scientific_name=Rosaceae; trna=trnfM; taxid=3745; genus_name=###; family_name=Rosaceae; rank=family; genus=-1; species=-1; Prunus persica chloroplast, complete genome. -cgcggggtagagcagcgtggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcaac ->trnI count=2; merged_taxid={3258: 1, 3262: 1}; species_name=###; family=3256; distance=0; scientific_name=Equisetum; trna=trnI; taxid=3257; genus_name=Equisetum; family_name=Equisetaceae; rank=genus; genus=3257; species=-1; Equisetum arvense chloroplast, complete genome. -gcatccatggctgaacggttaaagcacccgactcataatcggcgaattcacaggttcaac -tcctgttggatgca ->trnfM count=1; merged_taxid={3258: 1}; species_name=Equisetum arvense; family=3256; family_name=Equisetaceae; scientific_name=Equisetum arvense; trna=trnfM; gbac=NC_014699; taxid=3258; genus_name=Equisetum; rank=species; genus=3257; species=3258; distance=1; Equisetum arvense chloroplast, complete genome. -tagcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaa -atcctgtccccgcaaa ->trnfM count=1; merged_taxid={112168: 1}; species_name=Rhizanthella gardneri; family=4747; family_name=Orchidaceae; scientific_name=Rhizanthella gardneri; trna=trnfM; gbac=NC_014874; taxid=112168; genus_name=Rhizanthella; rank=species; genus=112167; species=112168; distance=0; Rhizanthella gardneri plastid, complete genome. -cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtttccgcaac ->trnI count=2; merged_taxid={112168: 2}; species_name=Rhizanthella gardneri; family=4747; family_name=Orchidaceae; scientific_name=Rhizanthella gardneri; trna=trnI; gbac=NC_014874; taxid=112168; genus_name=Rhizanthella; rank=species; genus=112167; species=112168; Rhizanthella gardneri plastid, complete genome. -gcatccgtggctgaatggttaaagcgcccaactcataattggcaaattcgtaggttcaat -tcctgctggatgcac ->trnfM count=2; merged_taxid={337360: 1, 337410: 1}; species_name=###; family=4027; distance=1; scientific_name=Erodium; trna=trnfM; taxid=21555; genus_name=Erodium; family_name=Geraniaceae; rank=genus; genus=21555; species=-1; Erodium carvifolium chloroplast, complete genome. -cgcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctacgcaac ->trnfM count=4; merged_taxid={337360: 1, 337345: 1, 337410: 1, 337380: 1}; species_name=###; family=4027; distance=1; scientific_name=Erodium; trna=trnfM; taxid=21555; genus_name=Erodium; family_name=Geraniaceae; rank=genus; genus=21555; species=-1; Erodium carvifolium chloroplast, complete genome. -ggcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtccccgcaac ->trnM count=2; merged_taxid={249350: 1, 574566: 1}; species_name=###; family=-1; distance=1; scientific_name=Trebouxiophyceae incertae sedis; trna=trnM; taxid=75981; genus_name=###; family_name=###; rank=no rank; genus=-1; species=-1; Coccomyxa sp. C-169 plastid, complete genome. -tgcctgcttagctcagttggttagagcatccgtctcatacgcggattgtcactagttcaa -atctagtagcaggcag ->trnfM count=1; merged_taxid={40888: 1}; species_name=Anthriscus cerefolium; family=4037; family_name=Apiaceae; scientific_name=Anthriscus cerefolium; trna=trnfM; gbac=NC_015113; taxid=40888; genus_name=Anthriscus; rank=species; genus=40886; species=40888; distance=0; Anthriscus cerefolium chloroplast, complete genome. -cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcaa ->trnfM count=2; merged_taxid={3988: 1, 3981: 1}; species_name=###; family=3977; distance=1; scientific_name=Euphorbiaceae; trna=trnfM; taxid=3977; genus_name=###; family_name=Euphorbiaceae; rank=family; genus=-1; species=-1; Hevea brasiliensis chloroplast, complete genome. -cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaagtcacgggttcaaa -tcccgtctccgcaac ->trnM count=1; merged_taxid={554065: 1}; species_name=Chlorella variabilis; family=35461; family_name=Chlorellaceae; scientific_name=Chlorella variabilis; trna=trnM; gbac=NC_015359; taxid=554065; genus_name=Chlorella; rank=species; genus=3071; species=554065; distance=3; Chlorella variabilis plastid, complete genome. -gcctgcttagctcagttggttagagcgtccgtctcatacgcggaatgtcactagttcgag -tctagtagcaggcacca ->trnfM count=1; merged_taxid={70216: 1}; species_name=Ptilidium pulcherrimum; family=70208; family_name=Ptilidiaceae; scientific_name=Ptilidium pulcherrimum; trna=trnfM; gbac=NC_015402; taxid=70216; genus_name=Ptilidium; rank=species; genus=70215; species=70216; distance=1; Ptilidium pulcherrimum chloroplast, complete genome. -cgcggggtagagcagtctggtagctcgcaaggctcataaccttgaggtcataggttcgaa -tcctgtctccgccac ->trnM count=1; merged_taxid={70216: 1}; species_name=Ptilidium pulcherrimum; family=70208; family_name=Ptilidiaceae; scientific_name=Ptilidium pulcherrimum; trna=trnM; gbac=NC_015402; taxid=70216; genus_name=Ptilidium; rank=species; genus=70215; species=70216; distance=1; Ptilidium pulcherrimum chloroplast, complete genome. -gcctacttaactcagtggttagagtatcgttttcatacggcgagagtcattggttcaaat -ccaatagtaggta ->trnI count=1; merged_taxid={70216: 1}; species_name=Ptilidium pulcherrimum; family=70208; family_name=Ptilidiaceae; scientific_name=Ptilidium pulcherrimum; trna=trnI; gbac=NC_015402; taxid=70216; genus_name=Ptilidium; rank=species; genus=70215; species=70216; distance=0; Ptilidium pulcherrimum chloroplast, complete genome. -gcatccatggctgaatggttaaagcacccaactcataattggcgaacttacaggttcaac -tcctgttggatgca ->trnfM count=2; merged_taxid={4432: 1, 4431: 1}; species_name=###; family=4429; distance=1; scientific_name=Nelumbo; trna=trnfM; taxid=4430; genus_name=Nelumbo; family_name=Nelumbonaceae; rank=genus; genus=4430; species=-1; Nelumbo lutea chloroplast, complete genome. -cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacaggttcaaa -tcctgtctccgcaac ->trnM count=1; merged_taxid={104533: 1}; species_name=Schizomeris leibleinii; family=35459; family_name=Schizomeridaceae; scientific_name=Schizomeris leibleinii; trna=trnM; gbac=NC_015645; taxid=104533; genus_name=Schizomeris; rank=species; genus=104532; species=104533; distance=0; Schizomeris leibleinii chloroplast, complete genome. -gcctgcttagctcagttggtcagagcatccgtttcatacgcgggatgtcactagttcaaa -tctagtagcaggca ->trnI count=1; merged_taxid={104533: 1}; species_name=Schizomeris leibleinii; family=35459; family_name=Schizomeridaceae; scientific_name=Schizomeris leibleinii; trna=trnI; gbac=NC_015645; taxid=104533; genus_name=Schizomeris; rank=species; genus=104532; species=104533; distance=0; Schizomeris leibleinii chloroplast, complete genome. -gcacttttggccgagcggttgaggcaatcgactcataatcgatttaaggtaggttcaact -cctacaaggtgca ->trnM count=2; merged_taxid={161112: 1, 3988: 1}; species_name=###; family=-1; distance=1; scientific_name=Mesangiospermae; trna=trnM; taxid=1437183; genus_name=###; family_name=###; rank=no rank; genus=-1; species=-1; Wolffia australiana chloroplast, complete genome. -acctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaat -ccaatagtaggtac ->trnfM count=2; merged_taxid={396994: 1, 412675: 1}; species_name=###; family=3650; distance=1; scientific_name=Cucumis; trna=trnfM; taxid=3655; genus_name=Cucumis; family_name=Cucurbitaceae; rank=genus; genus=3655; species=-1; Cucumis melo subsp. melo chloroplast, complete genome. -tcgcggggtagagcagcttggtagctcgcaaggctcataaccttgaagtcacgggttcaa -atcctgtctccgcaaa ->trnfM count=2; merged_taxid={147282: 1, 50179: 1}; species_name=###; family=25623; distance=1; scientific_name=Cephalotaxus; trna=trnfM; taxid=50178; genus_name=Cephalotaxus; family_name=Taxaceae; rank=genus; genus=50178; species=-1; Cephalotaxus wilsoniana chloroplast DNA, complete sequence. -gggcggagtagagcagtttggtagctcgcaaggctcataaccttgaagtcacgggttcaa -atcccgtctccgcaca ->trnM count=2; merged_taxid={147282: 1, 50179: 1}; species_name=###; family=25623; distance=0; scientific_name=Cephalotaxus; trna=trnM; taxid=50178; genus_name=Cephalotaxus; family_name=Taxaceae; rank=genus; genus=50178; species=-1; Cephalotaxus wilsoniana chloroplast DNA, complete sequence. -acccgcttaactcagtggttagagtttcgctttcatacggcgagagtccttggttcaaat -ctaatagtagata ->trnfM count=2; merged_taxid={50187: 1, 99815: 1}; species_name=###; family=3367; distance=0; scientific_name=Taiwania; trna=trnfM; taxid=25613; genus_name=Taiwania; family_name=Cupressaceae; rank=genus; genus=25613; species=-1; Taiwania cryptomerioides chloroplast DNA, complete sequence. -agcggagtagagcagtctggtagctcgcaaggctcataaccttgaagtcacgggttcaaa -tcccgtctccgcgc ->trnI count=6; merged_taxid={28977: 2, 50187: 2, 99815: 2}; species_name=###; family=3367; distance=1; scientific_name=Cupressaceae; trna=trnI; taxid=3367; genus_name=###; family_name=Cupressaceae; rank=family; genus=-1; species=-1; Taiwania cryptomerioides chloroplast DNA, complete sequence. -gcatccatggctgaatggtaaaagcacccaactcataattgggaagtcgcgggttcaatt -cctgctggatgcac ->trnM count=2; merged_taxid={50187: 1, 99815: 1}; species_name=###; family=3367; distance=0; scientific_name=Taiwania; trna=trnM; taxid=25613; genus_name=Taiwania; family_name=Cupressaceae; rank=genus; genus=25613; species=-1; Taiwania cryptomerioides chloroplast DNA, complete sequence. -acccacttaactcagtggttagagtatcgctctcatacggcgagggtcattggttcaaat -ccaatagtgggta ->trnfM count=1; merged_taxid={48534: 1}; species_name=Neottia nidus-avis; family=4747; family_name=Orchidaceae; scientific_name=Neottia nidus-avis; trna=trnfM; gbac=NC_016471; taxid=48534; genus_name=Neottia; rank=species; genus=48533; species=48534; distance=1; Neottia nidus-avis plastid, complete genome. -cgcggagtagagcagtttggtagctcacaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcaac ->trnM count=1; merged_taxid={48534: 1}; species_name=Neottia nidus-avis; family=4747; family_name=Orchidaceae; scientific_name=Neottia nidus-avis; trna=trnM; gbac=NC_016471; taxid=48534; genus_name=Neottia; rank=species; genus=48533; species=48534; distance=0; Neottia nidus-avis plastid, complete genome. -gcctacttaacccagtggttagagtattgctttcatacggcggtagccattggttcaaat -ccaatagtaggta ->trnfM count=1; merged_taxid={39899: 1}; species_name=Silene noctiflora; family=3568; family_name=Caryophyllaceae; scientific_name=Silene noctiflora; trna=trnfM; gbac=NC_016728; taxid=39899; genus_name=Silene; rank=species; genus=3573; species=39899; distance=0; Silene noctiflora chloroplast, complete genome. -ggcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcacaggttcaaa -tcctgtctccgcaa ->trnfM count=2; merged_taxid={490730: 1, 39875: 1}; species_name=###; family=3568; distance=1; scientific_name=Silene; trna=trnfM; taxid=3573; genus_name=Silene; family_name=Caryophyllaceae; rank=genus; genus=3573; species=-1; Silene conica chloroplast, complete genome. -ttgcggagtggagtagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaa -atcctgtctccgcaaa ->trnM count=1; merged_taxid={3046: 1}; species_name=Dunaliella salina; family=3043; family_name=Dunaliellaceae; scientific_name=Dunaliella salina; trna=trnM; gbac=NC_016732; taxid=3046; genus_name=Dunaliella; rank=species; genus=3044; species=3046; distance=0; Dunaliella salina chloroplast, complete genome. -gcctgcttagctcagtggtagagcgtctgtttcataagccgatggttcgctagttcgaat -ctagcagcaggca ->trnM count=2; merged_taxid={3159: 2}; species_name=Pedinomonas minor; family=35424; distance=1; scientific_name=Pedinomonas minor; trna=trnM; gbac=NC_016733; taxid=3159; genus_name=Pedinomonas; family_name=Pedinomonadaceae; rank=species; genus=3158; species=3159; Pedinomonas minor chloroplast, complete genome. -tgcctgcttagctcagttggctagagcatccgtttcatacgcggagtgtcactagttcga -atctagtagcaggcaa ->trnfM count=4; merged_taxid={171009: 1, 13365: 1, 42329: 1, 3311: 1}; species_name=###; family=-1; family_name=###; scientific_name=Acrogymnospermae; trna=trnfM; taxid=1437180; genus_name=###; rank=no rank; genus=-1; species=-1; Ginkgo biloba chloroplast, complete genome. -tgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgccg ->trnM count=1; merged_taxid={3311: 1}; species_name=Ginkgo biloba; family=3309; family_name=Ginkgoaceae; scientific_name=Ginkgo biloba; trna=trnM; gbac=NC_016986; taxid=3311; genus_name=Ginkgo; rank=species; genus=3310; species=3311; distance=0; Ginkgo biloba chloroplast, complete genome. -acccacttaactcagtggttagagtatcgcttccatacggcgggagtcattggttcaaat -ccaatagtaggta ->trnI count=1; merged_taxid={3311: 1}; species_name=Ginkgo biloba; family=3309; family_name=Ginkgoaceae; scientific_name=Ginkgo biloba; trna=trnI; gbac=NC_016986; taxid=3311; genus_name=Ginkgo; rank=species; genus=3310; species=3311; distance=1; Ginkgo biloba chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcgaattcgcgggttcaat -tcctgctggatgcac ->trnfM count=1; merged_taxid={996148: 1}; species_name=Mankyua chejuensis; family=13828; family_name=Ophioglossaceae; scientific_name=Mankyua chejuensis; trna=trnfM; gbac=NC_017006; taxid=996148; genus_name=Mankyua; rank=species; genus=996147; species=996148; distance=0; Mankyua chejuensis chloroplast, complete genome. -cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcatgggttcaaa -tcccgtctccgcaa ->trnI count=1; merged_taxid={996148: 1}; species_name=Mankyua chejuensis; family=13828; family_name=Ophioglossaceae; scientific_name=Mankyua chejuensis; trna=trnI; gbac=NC_017006; taxid=996148; genus_name=Mankyua; rank=species; genus=996147; species=996148; distance=1; Mankyua chejuensis chloroplast, complete genome. -gcatccatggctgaacggttaaagcacccgactcataatcggcgaattcacaggttcaac -tcctgttggatgcac ->trnfM count=3; merged_taxid={1049916: 1, 160538: 1, 100364: 1}; species_name=###; family=-1; distance=1; scientific_name=Liliopsida; trna=trnfM; taxid=4447; genus_name=###; family_name=###; rank=class; genus=-1; species=-1; Elodea canadensis chloroplast, complete genome. -cgcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcaac ->trnM count=1; merged_taxid={1208065: 1}; species_name=Trebouxiophyceae sp. MX-AZ01; family=-1; family_name=###; scientific_name=Trebouxiophyceae sp. MX-AZ01; trna=trnM; gbac=NC_018569; taxid=1208065; genus_name=###; rank=species; genus=-1; species=1208065; distance=0; Trebouxiophyceae sp. MX-AZ01 chloroplast, complete genome. -gcctgcttagctcagttggttagagcatccgtctcatacgcgggttgtcactggttcaaa -tctagtagcaggca ->trnfM count=1; merged_taxid={538574: 1}; species_name=Fragaria mandshurica; family=3745; family_name=Rosaceae; scientific_name=Fragaria mandshurica; trna=trnfM; gbac=NC_018767; taxid=538574; genus_name=Fragaria; rank=species; genus=3746; species=538574; distance=1; Fragaria mandshurica plastid, complete genome. -cgcggggtagagcagcgtggtagctcgcaaggctcataacctggaggtcacgggttcaaa -tcccgtctccgcaac ->trnM count=1; merged_taxid={13750: 1}; species_name=Vaccinium macrocarpon; family=4345; family_name=Ericaceae; scientific_name=Vaccinium macrocarpon; trna=trnM; gbac=NC_019616; taxid=13750; genus_name=Vaccinium; rank=species; genus=13749; species=13750; distance=1; Vaccinium macrocarpon plastid, complete genome. -gcctacttaactcagtggttagagtattgctttcatacggcaagagtcattggttcaaat -ccaatagtaggta ->trnfM count=2; merged_taxid={13750: 2}; species_name=Vaccinium macrocarpon; family=4345; distance=5; scientific_name=Vaccinium macrocarpon; trna=trnfM; gbac=NC_019616; taxid=13750; genus_name=Vaccinium; family_name=Ericaceae; rank=species; genus=13749; species=13750; Vaccinium macrocarpon plastid, complete genome. -cggggagtagagtagtctggtagctcgcaaggctcataaccttgaggtcgcgggttcaaa -tcccgcctccccac ->trnI count=1; merged_taxid={13750: 1}; species_name=Vaccinium macrocarpon; family=4345; family_name=Ericaceae; scientific_name=Vaccinium macrocarpon; trna=trnI; gbac=NC_019616; taxid=13750; genus_name=Vaccinium; rank=species; genus=13749; species=13750; distance=0; Vaccinium macrocarpon plastid, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggagagttcgtaggttcaat -tcctactggatgca ->trnM count=1; merged_taxid={304445: 1}; species_name=Pellia endiviifolia; family=40338; family_name=Pelliaceae; scientific_name=Pellia endiviifolia; trna=trnM; gbac=NC_019628; taxid=304445; genus_name=Pellia; rank=species; genus=40339; species=304445; distance=0; Pellia endiviifolia chloroplast, complete genome. -acctacttaactcaatggttagagtatcgctttcatacggcgagagtcattggttcaagt -ccaatagtaggta ->trnfM count=6; merged_taxid={41568: 1, 124929: 1, 192300: 1, 669134: 1, 395280: 1, 146995: 1}; species_name=###; family=-1; family_name=###; scientific_name=asterids; trna=trnfM; taxid=71274; genus_name=###; rank=subclass; genus=-1; species=-1; Chrysanthemum x morifolium chloroplast, complete genome. -cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacaggttcaaa -tcctgtctccgcaa ->trnfM count=1; merged_taxid={3262: 1}; species_name=Equisetum hyemale; family=3256; family_name=Equisetaceae; scientific_name=Equisetum hyemale; trna=trnfM; gbac=NC_020146; taxid=3262; genus_name=Equisetum; rank=species; genus=3257; species=3262; distance=1; Equisetum hyemale chloroplast, complete genome. -tagcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaa -atcctgtctccgcaaa ->trnfM count=1; merged_taxid={1267209: 1}; species_name=Ophioglossum californicum; family=13828; family_name=Ophioglossaceae; scientific_name=Ophioglossum californicum; trna=trnfM; gbac=NC_020147; taxid=1267209; genus_name=Ophioglossum; rank=species; genus=13833; species=1267209; distance=1; Ophioglossum californicum chloroplast, complete genome. -cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcatgggttcaaa -tcccttctccgcaa ->trnM count=1; merged_taxid={1267209: 1}; species_name=Ophioglossum californicum; family=13828; family_name=Ophioglossaceae; scientific_name=Ophioglossum californicum; trna=trnM; gbac=NC_020147; taxid=1267209; genus_name=Ophioglossum; rank=species; genus=13833; species=1267209; distance=0; Ophioglossum californicum chloroplast, complete genome. -gcctacttaactcagtggttagaggatcgctttcatacggcgatagtcattggttcgaat -ccaatagtaggta ->trnI count=1; merged_taxid={1267209: 1}; species_name=Ophioglossum californicum; family=13828; family_name=Ophioglossaceae; scientific_name=Ophioglossum californicum; trna=trnI; gbac=NC_020147; taxid=1267209; genus_name=Ophioglossum; rank=species; genus=13833; species=1267209; distance=0; Ophioglossum californicum chloroplast, complete genome. -gcatccatggctgaacggtcaaagcacccgactcataatcggcgaattcgcaggttcaac -ccctgctggatgca ->trnfM count=1; merged_taxid={13813: 1}; species_name=Nothoceros aenigmaticus; family=400690; family_name=Dendrocerotaceae; scientific_name=Nothoceros aenigmaticus; trna=trnfM; gbac=NC_020259; taxid=13813; genus_name=Nothoceros; rank=species; genus=319703; species=13813; distance=0; Nothoceros aenigmaticus plastid sequence. -cgcggggtagagcagcctggtagctcgcaaggctcataaccttgaggtcacgggttcgaa -tcctgtctccgcca ->trnM count=1; merged_taxid={13813: 1}; species_name=Nothoceros aenigmaticus; family=400690; family_name=Dendrocerotaceae; scientific_name=Nothoceros aenigmaticus; trna=trnM; gbac=NC_020259; taxid=13813; genus_name=Nothoceros; rank=species; genus=319703; species=13813; distance=1; Nothoceros aenigmaticus plastid sequence. -gcctacttaacttagtggttatagtatcgctttcatacggcgagagtcattggttcaaat -ccaatagtaggtac ->trnI count=1; merged_taxid={120273: 1}; species_name=Taxus mairei; family=25623; family_name=Taxaceae; scientific_name=Taxus mairei; trna=trnI; gbac=NC_020321; taxid=120273; genus_name=Taxus; rank=species; genus=25628; species=120273; distance=0; Taxus mairei voucher NN014 chloroplast, complete genome. -gcatccatggctgaatggtcaaagcacccaactcataattgggaagtcgcgggttcaatt -cctgctggatgca ->trnfM count=1; merged_taxid={120273: 1}; species_name=Taxus mairei; family=25623; family_name=Taxaceae; scientific_name=Taxus mairei; trna=trnfM; gbac=NC_020321; taxid=120273; genus_name=Taxus; rank=species; genus=25628; species=120273; distance=1; Taxus mairei voucher NN014 chloroplast, complete genome. -cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaagtcacgggttcaaa -tcccgtctccgcta ->trnM count=1; merged_taxid={120273: 1}; species_name=Taxus mairei; family=25623; family_name=Taxaceae; scientific_name=Taxus mairei; trna=trnM; gbac=NC_020321; taxid=120273; genus_name=Taxus; rank=species; genus=25628; species=120273; distance=3; Taxus mairei voucher NN014 chloroplast, complete genome. -acccacttaactcagtggttagagtatcgctttcatacggcgagagtcattggttcaaat -ccaatagtagaaa ->trnI count=1; merged_taxid={120273: 1}; species_name=Taxus mairei; family=25623; family_name=Taxaceae; scientific_name=Taxus mairei; trna=trnI; gbac=NC_020321; taxid=120273; genus_name=Taxus; rank=species; genus=25628; species=120273; distance=1; Taxus mairei voucher NN014 chloroplast, complete genome. -gcatccatggctgaatggtcaaagcacccaactcataattgggaagtcgcgggttcaatt -cctgctggatgcac ->trnfM count=1; merged_taxid={188518: 1}; species_name=Zingiber spectabile; family=4642; family_name=Zingiberaceae; scientific_name=Zingiber spectabile; trna=trnfM; gbac=NC_020363; taxid=188518; genus_name=Zingiber; rank=species; genus=4650; species=188518; distance=1; Zingiber spectabile plastid, complete genome. -cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaagtcatgggttcaaa -tcctttctccgcaac ->trnM count=3; merged_taxid={3818: 1, 136219: 1, 188518: 1}; species_name=###; family=-1; family_name=###; scientific_name=Mesangiospermae; trna=trnM; taxid=1437183; genus_name=###; rank=no rank; genus=-1; species=-1; Zingiber spectabile plastid, complete genome. -acctacttaactcagtggttagagtattgctttcatacggcggtagtcattggttcaaat -ccaatagtaggta ->trnfM count=1; merged_taxid={101696: 1}; species_name=Dasypogon bromeliifolius; family=77335; family_name=Dasypogonaceae; scientific_name=Dasypogon bromeliifolius; trna=trnfM; gbac=NC_020367; taxid=101696; genus_name=Dasypogon; rank=species; genus=101695; species=101696; distance=1; Dasypogon bromeliifolius plastid, complete genome. -cgcggagtagagcagtttggtagctcacaaggctcataaccttgaggtcacaggttcaaa -tcctgtctccgcaac ->trnI count=1; merged_taxid={33097: 1}; species_name=Gonium pectorale; family=3065; family_name=Volvocaceae; scientific_name=Gonium pectorale; trna=trnI; gbac=NC_020438; taxid=33097; genus_name=Gonium; rank=species; genus=33096; species=33097; distance=1; Gonium pectorale chloroplast, complete genome. -tgcactgttggccgagcggatgaggcaaacgactcataatcgttaccagataggttcaac -tcctatacggtgcaa ->trnI count=1; merged_taxid={330485: 1}; species_name=Pleodorina starrii; family=3065; family_name=Volvocaceae; scientific_name=Pleodorina starrii; trna=trnI; gbac=NC_021109; taxid=330485; genus_name=Pleodorina; rank=species; genus=47284; species=330485; distance=0; Pleodorina starrii plastid, complete genome. -gcactgttggccgagcggataaggcaaacgactcataatcgttctaagataggttcaact -cctatacagtgca ->trnM count=1; merged_taxid={330485: 1}; species_name=Pleodorina starrii; family=3065; family_name=Volvocaceae; scientific_name=Pleodorina starrii; trna=trnM; gbac=NC_021109; taxid=330485; genus_name=Pleodorina; rank=species; genus=47284; species=330485; distance=1; Pleodorina starrii plastid, complete genome. -tgcctgcttagctcagttggttagagcgtccgtttcataagctgattgtcactagttcaa -atctagtagcaggcat ->trnI count=1; merged_taxid={147282: 1}; species_name=Cephalotaxus oliveri; family=25623; family_name=Taxaceae; scientific_name=Cephalotaxus oliveri; trna=trnI; gbac=NC_021110; taxid=147282; genus_name=Cephalotaxus; rank=species; genus=50178; species=147282; distance=1; Cephalotaxus oliveri chloroplast, complete genome. -gcatccatggctgaatggtaaaagcacccaactcataattgggaagtcgcaggttcaatt -cctgttggatgcac ->trnM count=2; merged_taxid={87754: 1, 161395: 1}; species_name=###; family=91896; distance=0; scientific_name=Cistanche; trna=trnM; taxid=87753; genus_name=Cistanche; family_name=Orobanchaceae; rank=genus; genus=87753; species=-1; Cistanche deserticola chloroplast, complete genome. -acctacttaactcagcggttagagtattgctttcatacggcaggagtcgttggttcaaat -ccaatagtaggta ->trnfM count=2; merged_taxid={87754: 1, 161395: 1}; species_name=###; family=91896; distance=1; scientific_name=Cistanche; trna=trnfM; taxid=87753; genus_name=Cistanche; family_name=Orobanchaceae; rank=genus; genus=87753; species=-1; Cistanche deserticola chloroplast, complete genome. -tgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcaac ->trnfM count=1; merged_taxid={38686: 1}; species_name=Pharus latifolius; family=4479; family_name=Poaceae; scientific_name=Pharus latifolius; trna=trnfM; gbac=NC_021372; taxid=38686; genus_name=Pharus; rank=species; genus=38685; species=38686; distance=3; Pharus latifolius chloroplast, complete genome. -gagcggagtagagcattttggcagctcatgaggctcataaccttgaggtcacatagttcc -attcccatcttcgcact ->trnM count=3; merged_taxid={396313: 2, 4058: 1}; species_name=###; family=4056; distance=0; scientific_name=Rauvolfioideae; trna=trnM; taxid=167487; genus_name=###; family_name=Apocynaceae; rank=subfamily; genus=-1; species=-1; Catharanthus roseus cultivar Pacifica Punch Halo chloroplast, complete genome. -acctacttaactcagcggttagagtattgctttcatacggcaagagtcattggttcaaat -ccaatagtaggta ->trnfM count=2; merged_taxid={28977: 1, 54798: 1}; species_name=###; family=3367; family_name=Cupressaceae; scientific_name=Cupressaceae; trna=trnfM; taxid=3367; genus_name=###; rank=family; genus=-1; species=-1; Cunninghamia lanceolata chloroplast, complete genome. -cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaagtcacgggttcaaa -tcccgtctccgcaa ->trnfM count=1; merged_taxid={29650: 1}; species_name=Najas flexilis; family=26319; family_name=Hydrocharitaceae; scientific_name=Najas flexilis; trna=trnfM; gbac=NC_021936; taxid=29650; genus_name=Najas; rank=species; genus=13165; species=29650; distance=4; Najas flexilis chloroplast, complete genome. -cgcggagttgagcagcctggcagctcgcaaggctcataaccttgaggtcacaggttcaaa -tcctgtctccgtgtc ->trnM count=1; merged_taxid={29650: 1}; species_name=Najas flexilis; family=26319; family_name=Hydrocharitaceae; scientific_name=Najas flexilis; trna=trnM; gbac=NC_021936; taxid=29650; genus_name=Najas; rank=species; genus=13165; species=29650; distance=1; Najas flexilis chloroplast, complete genome. -gcctacttaactcagaggttagagtattgctttcatacggcgagagtcattggttcaaat -ccaatagtaggta ->trnM count=3; merged_taxid={13824: 2, 388472: 1}; species_name=###; family=-1; distance=0; scientific_name=Polypodiidae; trna=trnM; taxid=1521262; genus_name=###; family_name=###; rank=subclass; genus=-1; species=-1; Lygodium japonicum chloroplast, complete genome. -gcctacttgactcagcggttagagtatcgctttcatacggcgagagtcattggttcgaat -ccaatagtaggta ->trnI count=2; merged_taxid={13824: 2}; species_name=Lygodium japonicum; family=693765; distance=0; scientific_name=Lygodium japonicum; trna=trnI; taxid=13824; genus_name=Lygodium; family_name=Lygodiaceae; rank=species; genus=13823; species=13824; Lygodium japonicum chloroplast, complete genome. -gcatccatggctgaacggtcaaagcacccaactcataattggcgaattcgcaggttcaac -tcctgttggatgca ->trnfM count=3; merged_taxid={388472: 1, 129946: 1, 3284: 1}; species_name=###; family=-1; distance=0; scientific_name=Euphyllophyta; trna=trnfM; taxid=78536; genus_name=###; family_name=###; rank=no rank; genus=-1; species=-1; Marsilea crenata chloroplast, complete genome. -cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacaggttcaaa -tcctgtctccgcaa ->trnfM count=2; merged_taxid={48545: 1, 528293: 1}; species_name=###; family=4056; distance=1; scientific_name=Asclepias; trna=trnfM; taxid=21199; genus_name=Asclepias; family_name=Apocynaceae; rank=genus; genus=21199; species=-1; Asclepias nivea chloroplast, complete genome. -cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtccccgcaac ->trnM count=5; merged_taxid={48545: 1, 63479: 1, 528293: 1, 141598: 1, 144545: 1}; species_name=###; family=4056; distance=0; scientific_name=Apocynaceae; trna=trnM; taxid=4056; genus_name=###; family_name=Apocynaceae; rank=family; genus=-1; species=-1; Asclepias nivea chloroplast, complete genome. -acctacttaactcagcggttagagtattgctttcatacggcgagagtcattggttcaaat -ccaatagtaggta ->trnfM count=1; merged_taxid={13601: 1}; species_name=Berberis bealei; family=41773; family_name=Berberidaceae; scientific_name=Berberis bealei; trna=trnfM; gbac=NC_022457; taxid=13601; genus_name=Berberis; rank=species; genus=22774; species=13601; distance=0; Berberis bealei chloroplast, complete genome. -cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacaggttcaaa -tcctgtctccgcaa ->trnfM count=1; merged_taxid={4664: 1}; species_name=Ravenala madagascariensis; family=4660; family_name=Strelitziaceae; scientific_name=Ravenala madagascariensis; trna=trnfM; gbac=NC_022927; taxid=4664; genus_name=Ravenala; rank=species; genus=4663; species=4664; distance=2; Ravenala madagascariensis plastid, complete genome. -cgcggagtagagcagtttggttagctcgcaaggctcataaccttgaggtcacgggttcaa -atcccgtctccgcacc ->trnM count=1; merged_taxid={29695: 1}; species_name=Phragmites australis; family=4479; family_name=Poaceae; scientific_name=Phragmites australis; trna=trnM; gbac=NC_022958; taxid=29695; genus_name=Phragmites; rank=species; genus=15745; species=29695; distance=3; Phragmites australis chloroplast, complete genome. -ttgctacttaactcagtggttagagtactgctttcatacggcgggagtcattggttcaaa -tccaatagtaggtag ->trnfM count=2; merged_taxid={3873: 1, 3870: 1}; species_name=###; family=3803; distance=1; scientific_name=Lupinus; trna=trnfM; taxid=3869; genus_name=Lupinus; family_name=Fabaceae; rank=genus; genus=3869; species=-1; Lupinus luteus chloroplast, complete genome. -tcgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaa -atcccgtctccgcaag ->trnfM count=1; merged_taxid={86091: 1}; species_name=Schwalbea americana; family=91896; family_name=Orobanchaceae; scientific_name=Schwalbea americana; trna=trnfM; gbac=NC_023115; taxid=86091; genus_name=Schwalbea; rank=species; genus=86090; species=86091; distance=1; Schwalbea americana chloroplast genome. -cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcacc ->trnM count=1; merged_taxid={86091: 1}; species_name=Schwalbea americana; family=91896; family_name=Orobanchaceae; scientific_name=Schwalbea americana; trna=trnM; gbac=NC_023115; taxid=86091; genus_name=Schwalbea; rank=species; genus=86090; species=86091; distance=0; Schwalbea americana chloroplast genome. -acctacttaactcagcggttagagtattgctttcatacggcagaagtcattggttcaaat -ccaatagtaggta ->trnfM count=1; merged_taxid={60851: 1}; species_name=Agathis dammara; family=25664; family_name=Araucariaceae; scientific_name=Agathis dammara; trna=trnfM; gbac=NC_023119; taxid=60851; genus_name=Agathis; rank=species; genus=54793; species=60851; distance=1; Agathis dammara chloroplast DNA, complete genome. -ttgcggagtagagcagcttggtagctcgcgaggctcataaccttgaggtcacgggttcaa -atcccgtctccgctag ->trnM count=2; merged_taxid={60851: 1, 34341: 1}; species_name=###; family=25664; distance=0; scientific_name=Araucariaceae; trna=trnM; taxid=25664; genus_name=###; family_name=Araucariaceae; rank=family; genus=-1; species=-1; Agathis dammara chloroplast DNA, complete genome. -acccacttaactcagtggttagagtgtcgctttcatacggcgagagtcattggttcaaat -ccaatagtaggta ->trnI count=1; merged_taxid={60851: 1}; species_name=Agathis dammara; family=25664; family_name=Araucariaceae; scientific_name=Agathis dammara; trna=trnI; gbac=NC_023119; taxid=60851; genus_name=Agathis; rank=species; genus=54793; species=60851; distance=0; Agathis dammara chloroplast DNA, complete genome. -gcatctatggctgaatggtcaaagcgcccaactcataattgggaagtcacgggttcaatt -cctgctggatgca ->trnI count=1; merged_taxid={60851: 1}; species_name=Agathis dammara; family=25664; family_name=Araucariaceae; scientific_name=Agathis dammara; trna=trnI; gbac=NC_023119; taxid=60851; genus_name=Agathis; rank=species; genus=54793; species=60851; distance=2; Agathis dammara chloroplast DNA, complete genome. -gcatccatggctgaatggtcaaagcgcccaactcataattgggaagtcgcgggttcaatt -cctgctggatgcacc ->trnfM count=3; merged_taxid={36012: 1, 1030197: 1, 1505646: 1}; species_name=###; family=3362; distance=0; scientific_name=Podocarpaceae; trna=trnfM; taxid=3362; genus_name=###; family_name=Podocarpaceae; rank=family; genus=-1; species=-1; Nageia nagi chloroplast DNA, complete genome. -cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaagtcacgggttcaaa -tcccgtctccgcta ->trnI count=11; merged_taxid={39584: 1, 50176: 1, 85954: 1, 48929: 1, 36012: 1, 1505646: 1, 13469: 1, 54798: 1, 257623: 1, 466205: 1, 487038: 1}; species_name=###; family=-1; distance=0; scientific_name=Pinidae; trna=trnI; taxid=3313; genus_name=###; family_name=###; rank=subclass; genus=-1; species=-1; Nageia nagi chloroplast DNA, complete genome. -gcatccatggctgaatggtaaaagcacccaactcataattgggaagtcgcgggttcaatt -cctgctggatgca ->trnI count=5; merged_taxid={48929: 1, 85954: 1, 13469: 1, 54798: 1, 257623: 1}; species_name=###; family=3367; family_name=Cupressaceae; scientific_name=Cupressaceae; trna=trnI; taxid=3367; genus_name=###; rank=family; genus=-1; species=-1; Calocedrus formosana chloroplast DNA, complete genome. -gtatccatggctgaatggtaaaagcacccaactcataattgggaagtcgcgggttcaatt -cctgctggatgcac ->trnfM count=1; merged_taxid={4179: 1}; species_name=Conopholis americana; family=91896; family_name=Orobanchaceae; scientific_name=Conopholis americana; trna=trnfM; gbac=NC_023131; taxid=4179; genus_name=Conopholis; rank=species; genus=4178; species=4179; distance=0; Conopholis americana chloroplast complete genome. -cgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcatgggttcaaa -tcctgtcttcgcaa ->trnM count=1; merged_taxid={4179: 1}; species_name=Conopholis americana; family=91896; family_name=Orobanchaceae; scientific_name=Conopholis americana; trna=trnM; gbac=NC_023131; taxid=4179; genus_name=Conopholis; rank=species; genus=4178; species=4179; distance=0; Conopholis americana chloroplast complete genome. -acctatttaactcagtggttagagtcttgctttcatatggcagaagtcattggttcaaat -ccaatagtaggta ->trnI count=1; merged_taxid={4179: 1}; species_name=Conopholis americana; family=91896; family_name=Orobanchaceae; scientific_name=Conopholis americana; trna=trnI; gbac=NC_023131; taxid=4179; genus_name=Conopholis; rank=species; genus=4178; species=4179; distance=1; Conopholis americana chloroplast complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggctaatttgtaggttcaat -tcctactggatgcac ->trnM count=1; merged_taxid={223125: 1}; species_name=Orobanche purpurea; family=91896; family_name=Orobanchaceae; scientific_name=Orobanche purpurea; trna=trnM; gbac=NC_023132; taxid=223125; genus_name=Orobanche; rank=species; genus=36747; species=223125; distance=1; Phelipanche purpurea chloroplast complete genome, specimen voucher BONN:S. Wicke Op38/39. -gcctacttaactcagtggttagagtattgctttcatacggcagtagtcattggttcaaat -ccaatagtaggta ->trnfM count=1; merged_taxid={223125: 1}; species_name=Orobanche purpurea; family=91896; family_name=Orobanchaceae; scientific_name=Orobanche purpurea; trna=trnfM; gbac=NC_023132; taxid=223125; genus_name=Orobanche; rank=species; genus=36747; species=223125; distance=0; Phelipanche purpurea chloroplast complete genome, specimen voucher BONN:S. Wicke Op38/39. -cgcggagtagagtagtttggtatctcgcaaggctcataaccttgagatcgcaggttcaaa -tcctgtctccgcaa ->trnI count=1; merged_taxid={223125: 1}; species_name=Orobanche purpurea; family=91896; family_name=Orobanchaceae; scientific_name=Orobanche purpurea; trna=trnI; gbac=NC_023132; taxid=223125; genus_name=Orobanche; rank=species; genus=36747; species=223125; distance=1; Phelipanche purpurea chloroplast complete genome, specimen voucher BONN:S. Wicke Op38/39. -gcatccatggctgaatggttaaagcgcccaactcataattggcgattttgtaggttcaat -tcctactggatgcac ->trnI count=4; merged_taxid={93677: 2, 38687: 2}; species_name=###; family=4479; family_name=Poaceae; scientific_name=Poaceae; trna=trnI; taxid=4479; genus_name=###; rank=family; genus=-1; species=-1; Pharus lappulaceus chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcaaatttgcgggttcaat -tcctgctggatgcac ->trnfM count=5; merged_taxid={108544: 1, 55185: 1, 4692: 1, 152093: 1, 152089: 1}; species_name=###; family=-1; distance=1; scientific_name=Liliales; trna=trnfM; taxid=4667; genus_name=###; family_name=###; rank=order; genus=-1; species=-1; Fritillaria taipaiensis chloroplast, complete genome. -cgcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcgcaggttcaaa -tcctgtctccgcaac ->trnfM count=1; merged_taxid={28971: 1}; species_name=Viviania marifolia; family=91853; family_name=Vivianiaceae; scientific_name=Viviania marifolia; trna=trnfM; gbac=NC_023259; taxid=28971; genus_name=Viviania; rank=species; genus=21559; species=28971; distance=1; Viviania marifolia chloroplast, complete genome. -tcgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaa -atcccgtccccgcaat ->trnM count=1; merged_taxid={253189: 1}; species_name=Hypseocharis bilobata; family=4027; family_name=Geraniaceae; scientific_name=Hypseocharis bilobata; trna=trnM; gbac=NC_023260; taxid=253189; genus_name=Hypseocharis; rank=species; genus=21566; species=253189; distance=0; Hypseocharis bilobata chloroplast, complete genome. -acctacttaactcagtggttagagtatcgctttcatacggcgggagtcattggttcaagt -ccaatagtaggta ->trnfM count=2; merged_taxid={253189: 2}; species_name=Hypseocharis bilobata; family=4027; distance=2; scientific_name=Hypseocharis bilobata; trna=trnfM; gbac=NC_023260; taxid=253189; genus_name=Hypseocharis; family_name=Geraniaceae; rank=species; genus=21566; species=253189; Hypseocharis bilobata chloroplast, complete genome. -cgcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcgcgggttcaaa -tcccgtctccgcacc ->trnfM count=1; merged_taxid={73178: 1}; species_name=Pelargonium alternans; family=4027; family_name=Geraniaceae; scientific_name=Pelargonium alternans; trna=trnfM; gbac=NC_023261; taxid=73178; genus_name=Pelargonium; rank=species; genus=4030; species=73178; distance=2; Pelargonium alternans chloroplast, complete genome. -tgcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcgtgggttcaaa -tcccgtcttcgcaacc ->trnM count=1; merged_taxid={73178: 1}; species_name=Pelargonium alternans; family=4027; family_name=Geraniaceae; scientific_name=Pelargonium alternans; trna=trnM; gbac=NC_023261; taxid=73178; genus_name=Pelargonium; rank=species; genus=4030; species=73178; distance=0; Pelargonium alternans chloroplast, complete genome. -gcctacttaactcagtggttagagtattgctttcatacggcgggagtcgttggttcaaat -ccaatagtaggca ->trnfM count=1; merged_taxid={120072: 1}; species_name=Petrosavia stellaris; family=114079; family_name=Petrosaviaceae; scientific_name=Petrosavia stellaris; trna=trnfM; gbac=NC_023356; taxid=120072; genus_name=Petrosavia; rank=species; genus=114080; species=120072; distance=1; Petrosavia stellaris plastid, complete genome. -cgcggagtggagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcaac ->trnI count=1; merged_taxid={120072: 1}; species_name=Petrosavia stellaris; family=114079; family_name=Petrosaviaceae; scientific_name=Petrosavia stellaris; trna=trnI; gbac=NC_023356; taxid=120072; genus_name=Petrosavia; rank=species; genus=114080; species=120072; distance=1; Petrosavia stellaris plastid, complete genome. -gcatccatggctgaatggttaaagcacccaactcataattggcaaattcgtaggttcaat -tcctgctggatgcac ->trnM count=3; merged_taxid={120072: 1, 459585: 1, 142615: 1}; species_name=###; family=-1; family_name=###; scientific_name=Petrosaviidae; trna=trnM; taxid=1437197; genus_name=###; rank=no rank; genus=-1; species=-1; Petrosavia stellaris plastid, complete genome. -acctacttaacccagtggttagagtattgctttcatacggcgggagtcgttggttcaaat -ccaatagtaggta ->trnfM count=1; merged_taxid={223107: 1}; species_name=Orobanche gracilis; family=91896; family_name=Orobanchaceae; scientific_name=Orobanche gracilis; trna=trnfM; gbac=NC_023464; taxid=223107; genus_name=Orobanche; rank=species; genus=36747; species=223107; distance=1; Orobanche gracilis chloroplast, complete genome. -cgcggagtagagtagtttggtagctcgcaaggctcataaccttgagatcacaggttcaaa -tcctgtctccgcaac ->trnI count=3; merged_taxid={223107: 1, 223102: 2}; species_name=###; family=91896; distance=1; scientific_name=Orobanche; trna=trnI; taxid=36747; genus_name=Orobanche; family_name=Orobanchaceae; rank=genus; genus=36747; species=-1; Orobanche gracilis chloroplast, complete genome. -gcatccatggctgaatggttaaagcacccaactcataattggcgacttcgtaggttcaat -tcctactggatgcac ->trnI count=1; merged_taxid={46066: 1}; species_name=Orobanche ramosa; family=91896; family_name=Orobanchaceae; scientific_name=Orobanche ramosa; trna=trnI; gbac=NC_023465; taxid=46066; genus_name=Orobanche; rank=species; genus=36747; species=46066; distance=1; Phelipanche ramosa chloroplast complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcgatttcgtaggttcaat -tcctactggatgcac ->trnM count=1; merged_taxid={46066: 1}; species_name=Orobanche ramosa; family=91896; family_name=Orobanchaceae; scientific_name=Orobanche ramosa; trna=trnM; gbac=NC_023465; taxid=46066; genus_name=Orobanche; rank=species; genus=36747; species=46066; distance=0; Phelipanche ramosa chloroplast complete genome. -gcctacttaactcagtggttagagtattgctttcatacggcggtagtcattggttcaaat -ccaatagtaggta ->trnfM count=1; merged_taxid={46066: 1}; species_name=Orobanche ramosa; family=91896; family_name=Orobanchaceae; scientific_name=Orobanche ramosa; trna=trnfM; gbac=NC_023465; taxid=46066; genus_name=Orobanche; rank=species; genus=36747; species=46066; distance=0; Phelipanche ramosa chloroplast complete genome. -cgcggagtagagtagtttggtagctcacaaggctcataaccttgaggtcgcaggttcaaa -tcctgtctccgcaa ->trnI count=1; merged_taxid={3075: 1}; species_name=Auxenochlorella protothecoides; family=35461; family_name=Chlorellaceae; scientific_name=Auxenochlorella protothecoides; trna=trnI; gbac=NC_023775; taxid=3075; genus_name=Auxenochlorella; rank=species; genus=191392; species=3075; distance=2; Auxenochlorella protothecoides chloroplast, complete genome. -tgcatccatggcagagtggtcgatcgcaccgcactcataatgcggttctttttaaggcgc -cgttggttcaaacccaactggatgcaa ->trnM count=1; merged_taxid={3075: 1}; species_name=Auxenochlorella protothecoides; family=35461; family_name=Chlorellaceae; scientific_name=Auxenochlorella protothecoides; trna=trnM; gbac=NC_023775; taxid=3075; genus_name=Auxenochlorella; rank=species; genus=191392; species=3075; distance=0; Auxenochlorella protothecoides chloroplast, complete genome. -gcctacttagctcagctggttagagcatccgtctcatacgcggaatgtcactggttcaaa -tccagtagtaggcac ->trnI count=1; merged_taxid={1030197: 1}; species_name=Podocarpus lambertii; family=3362; family_name=Podocarpaceae; scientific_name=Podocarpus lambertii; trna=trnI; gbac=NC_023805; taxid=1030197; genus_name=Podocarpus; rank=species; genus=3363; species=1030197; distance=0; Podocarpus lambertii chloroplast, complete genome. -gcatccatggctgaatggttaaagcacccaactcataattgggaagtcgcgggttcaatt -cctgctggatgca ->trnM count=1; merged_taxid={744259: 1}; species_name=Trigonobalanus doichangensis; family=3503; family_name=Fagaceae; scientific_name=Trigonobalanus doichangensis; trna=trnM; gbac=NC_023959; taxid=744259; genus_name=Trigonobalanus; rank=species; genus=60429; species=744259; distance=1; Trigonobalanus doichangensis chloroplast, complete genome. -acctacttaactcagtggttagagtattgctttcatacggcgggagtcgttggttcaaat -ccaatagtaggta ->trnfM count=4; merged_taxid={884032: 1, 39584: 1, 466205: 1, 487038: 1}; species_name=###; family=3367; family_name=Cupressaceae; scientific_name=Juniperus; trna=trnfM; taxid=13100; genus_name=Juniperus; rank=genus; genus=13100; species=-1; Juniperus bermudiana chloroplast, complete genome. -cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaagtcatgggttcaaa -tcccatctccgcaa ->trnI count=4; merged_taxid={884032: 1, 39584: 1, 466205: 1, 487038: 1}; species_name=###; family=3367; distance=1; scientific_name=Juniperus; trna=trnI; taxid=13100; genus_name=Juniperus; family_name=Cupressaceae; rank=genus; genus=13100; species=-1; Juniperus bermudiana chloroplast, complete genome. -tgtatccatggctgaatggtaaaagcacccaactcataattgggaagtcgcgggttcaat -tcctgctggatgcat ->trnI count=3; merged_taxid={97024: 1, 361561: 1, 97014: 1}; species_name=###; family=3803; distance=2; scientific_name=Trifolium; trna=trnI; taxid=3898; genus_name=Trifolium; family_name=Fabaceae; rank=genus; genus=3898; species=-1; Trifolium grandiflorum plastid, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcgaagtcgtaggttcaat -tcctactggatgcacc ->trnfM count=3; merged_taxid={97024: 1, 361561: 1, 97014: 1}; species_name=###; family=3803; distance=1; scientific_name=Trifolium; trna=trnfM; taxid=3898; genus_name=Trifolium; family_name=Fabaceae; rank=genus; genus=3898; species=-1; Trifolium grandiflorum plastid, complete genome. -cgcggggtagagcaacttggtagctcacaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcaac ->trnI count=2; merged_taxid={3899: 2}; species_name=Trifolium repens; family=3803; distance=0; scientific_name=Trifolium repens; trna=trnI; gbac=NC_024036; taxid=3899; genus_name=Trifolium; family_name=Fabaceae; rank=species; genus=3898; species=3899; Trifolium repens plastid, complete genome. -gcatccatggctgaatggttaaagcacccaactcataattggcgaagtcgtaggttcaat -tcctactggatgca ->trnfM count=1; merged_taxid={3899: 1}; species_name=Trifolium repens; family=3803; family_name=Fabaceae; scientific_name=Trifolium repens; trna=trnfM; gbac=NC_024036; taxid=3899; genus_name=Trifolium; rank=species; genus=3898; species=3899; distance=1; Trifolium repens plastid, complete genome. -cgcggagtagagcaacttggtagctcgtaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcaac ->trnfM count=3; merged_taxid={198914: 1, 49827: 1, 35938: 1}; species_name=###; family=3803; distance=1; scientific_name=Papilionoideae; trna=trnfM; taxid=3814; genus_name=###; family_name=Fabaceae; rank=subfamily; genus=-1; species=-1; Glycyrrhiza glabra chloroplast, complete genome. -cgcggggtagagcaacttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcaac ->trnfM count=10; merged_taxid={337345: 1, 22978: 1, 597284: 1, 123495: 1, 1186155: 1, 1125932: 1, 337380: 1, 1186172: 1, 715485: 1, 597311: 1}; species_name=###; family=-1; distance=1; scientific_name=rosids; trna=trnfM; taxid=71275; genus_name=###; family_name=###; rank=subclass; genus=-1; species=-1; Hirtella racemosa chloroplast, complete genome. -cgcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcaac ->trnI count=1; merged_taxid={3284: 1}; species_name=Osmundastrum cinnamomeum; family=3282; family_name=Osmundaceae; scientific_name=Osmundastrum cinnamomeum; trna=trnI; gbac=NC_024157; taxid=3284; genus_name=Osmundastrum; rank=species; genus=465509; species=3284; distance=1; Osmundastrum cinnamomeum chloroplast, complete genome. -gcatccatggctgaacggtcaaagcacccaactcataattggcgaattcacaggttcaac -tcctgttggatgcac ->trnM count=1; merged_taxid={397682: 1}; species_name=Diplopterygium glaucum; family=3272; family_name=Gleicheniaceae; scientific_name=Diplopterygium glaucum; trna=trnM; gbac=NC_024158; taxid=397682; genus_name=Diplopterygium; rank=species; genus=292898; species=397682; distance=0; Diplopterygium glaucum chloroplast, complete genome. -gcctacttaactcagtggttggagtatcgctttcatacggcgagagtcattggttcgaat -ccaatagtaggta ->trnI count=1; merged_taxid={38716: 1}; species_name=Olyra latifolia; family=4479; family_name=Poaceae; scientific_name=Olyra latifolia; trna=trnI; gbac=NC_024165; taxid=38716; genus_name=Olyra; rank=species; genus=38715; species=38716; distance=0; Olyra latifolia plastid, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggtaaatttgcgggttcaat -tcctgctggatgca ->trnfM count=1; merged_taxid={361940: 1}; species_name=Trifolium meduseum; family=3803; family_name=Fabaceae; scientific_name=Trifolium meduseum; trna=trnfM; gbac=NC_024166; taxid=361940; genus_name=Trifolium; rank=species; genus=3898; species=361940; distance=1; Trifolium meduseum chloroplast, complete genome. -agcggggtagagcagcttggtagctcgtaaggctcataaccttgaggtcacgggttcaaa -tcccgtccccgcaac ->trnI count=1; merged_taxid={3175: 1}; species_name=Klebsormidium flaccidum; family=3173; family_name=Klebsormidiaceae; scientific_name=Klebsormidium flaccidum; trna=trnI; gbac=NC_024167; taxid=3175; genus_name=Klebsormidium; rank=species; genus=3174; species=3175; distance=1; Klebsormidium flaccidum culture-collection SAG:121.8 chloroplast, complete genome. -tgcatccatggctgaacggtgaaagcgcccaactcataattggagagttagcgggttcga -ctcctgctggatgcaa ->trnfM count=1; merged_taxid={3175: 1}; species_name=Klebsormidium flaccidum; family=3173; family_name=Klebsormidiaceae; scientific_name=Klebsormidium flaccidum; trna=trnfM; gbac=NC_024167; taxid=3175; genus_name=Klebsormidium; rank=species; genus=3174; species=3175; distance=2; Klebsormidium flaccidum culture-collection SAG:121.8 chloroplast, complete genome. -tagcggagtagagcaactaggtagctcgcaaggctcataaccttgaggttacaggttcaa -atcctgtctccgccaa ->trnfM count=1; merged_taxid={43943: 1}; species_name=Roya anglica; family=31319; family_name=Mesotaeniaceae; scientific_name=Roya anglica; trna=trnfM; gbac=NC_024168; taxid=43943; genus_name=Roya; rank=species; genus=43942; species=43943; distance=1; Roya anglica culture-collection ACOI:799 chloroplast, complete genome. -ggcggagtagagcagcctggtagctcgcaaggctcataaccttgaggtcgcacgttcaaa -tcatgcctccgccc ->trnI count=1; merged_taxid={43943: 1}; species_name=Roya anglica; family=31319; family_name=Mesotaeniaceae; scientific_name=Roya anglica; trna=trnI; gbac=NC_024168; taxid=43943; genus_name=Roya; rank=species; genus=43942; species=43943; distance=0; Roya anglica culture-collection ACOI:799 chloroplast, complete genome. -gcatccatggctgagtggttaaagcacccaactcataattgggcaattcgcgggttcgag -tcctgctggatgca ->trnM count=1; merged_taxid={43943: 1}; species_name=Roya anglica; family=31319; family_name=Mesotaeniaceae; scientific_name=Roya anglica; trna=trnM; gbac=NC_024168; taxid=43943; genus_name=Roya; rank=species; genus=43942; species=43943; distance=0; Roya anglica culture-collection ACOI:799 chloroplast, complete genome. -gcctacttaactcagtggttagagtgtcgctttcatacggcgagagtcattggttcaagt -ccaatagtaggca ->trnfM count=1; merged_taxid={184485: 1}; species_name=Mesotaenium endlicherianum; family=31319; family_name=Mesotaeniaceae; scientific_name=Mesotaenium endlicherianum; trna=trnfM; gbac=NC_024169; taxid=184485; genus_name=Mesotaenium; rank=species; genus=31320; species=184485; distance=1; Mesotaenium endlicherianum culture-collection SAG:12.97 chloroplast, complete genome. -ggcggagtagagcagtctggtagctcgcaaggctcataaccttgaggtcgcacgttcaaa -tcatgcctccgccc ->trnM count=1; merged_taxid={184485: 1}; species_name=Mesotaenium endlicherianum; family=31319; family_name=Mesotaeniaceae; scientific_name=Mesotaenium endlicherianum; trna=trnM; gbac=NC_024169; taxid=184485; genus_name=Mesotaenium; rank=species; genus=31320; species=184485; distance=0; Mesotaenium endlicherianum culture-collection SAG:12.97 chloroplast, complete genome. -gcctacttaactcagcggttagagtgtcgctttcatacggcgaaagtcattggttcaagt -ccaatagtaggca ->trnI count=1; merged_taxid={184485: 1}; species_name=Mesotaenium endlicherianum; family=31319; family_name=Mesotaeniaceae; scientific_name=Mesotaenium endlicherianum; trna=trnI; gbac=NC_024169; taxid=184485; genus_name=Mesotaenium; rank=species; genus=31320; species=184485; distance=1; Mesotaenium endlicherianum culture-collection SAG:12.97 chloroplast, complete genome. -tgcatccatggctgagtggttaaagcacccgactcataattgggcacttcgcaggttcga -accctgctggatgcag ->trnM count=1; merged_taxid={55577: 1}; species_name=Dioscorea rotundata; family=4671; family_name=Dioscoreaceae; scientific_name=Dioscorea rotundata; trna=trnM; gbac=NC_024170; taxid=55577; genus_name=Dioscorea; rank=species; genus=4672; species=55577; distance=1; Dioscorea rotundata plastid, complete genome. -acctacttaactcagtggttagagtattgctttcatacggcagaagtcattggttcaaat -ccaatagtaggtac ->trnM count=7; merged_taxid={416032: 1, 1547847: 1, 58215: 1, 29678: 1, 65975: 1, 42072: 1, 221757: 1}; species_name=###; family=4479; family_name=Poaceae; scientific_name=PACMAD clade; trna=trnM; taxid=147370; genus_name=###; rank=no rank; genus=-1; species=-1; Neyraudia reynaudiana chloroplast, complete genome. -tgcctacttaactcagtggttagagtactgctttcatacggcgggagtcattggttcaaa -tccaatagtaggtag ->trnI count=1; merged_taxid={37420: 1}; species_name=Tetraphis pellucida; family=37418; family_name=Tetraphidaceae; scientific_name=Tetraphis pellucida; trna=trnI; gbac=NC_024291; taxid=37420; genus_name=Tetraphis; rank=species; genus=37419; species=37420; distance=0; Tetraphis pellucida chloroplast, complete genome. -gcatccatggctgaacggttaaagcacccaactcataattggcgaactcacaggttcaac -tcctgttggatgca ->trnM count=1; merged_taxid={37420: 1}; species_name=Tetraphis pellucida; family=37418; family_name=Tetraphidaceae; scientific_name=Tetraphis pellucida; trna=trnM; gbac=NC_024291; taxid=37420; genus_name=Tetraphis; rank=species; genus=37419; species=37420; distance=1; Tetraphis pellucida chloroplast, complete genome. -gcctacttaactcagtggttcagagtatcgctttcatacggcgagagtcattggttcaaa -tccaatagtaggca ->trnfM count=1; merged_taxid={37420: 1}; species_name=Tetraphis pellucida; family=37418; family_name=Tetraphidaceae; scientific_name=Tetraphis pellucida; trna=trnfM; gbac=NC_024291; taxid=37420; genus_name=Tetraphis; rank=species; genus=37419; species=37420; distance=2; Tetraphis pellucida chloroplast, complete genome. -cgcggggtagagcagcctggtagctcgcaaggctcataaccttgaggccacgggttcaaa -tcccgtctccgcta ->trnI count=2; merged_taxid={111431: 2}; species_name=Fargesia yunnanensis; family=4479; distance=1; scientific_name=Fargesia yunnanensis; trna=trnI; gbac=NC_024717; taxid=111431; genus_name=Fargesia; family_name=Poaceae; rank=species; genus=111430; species=111431; Fargesia yunnanensis chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggtaaatttgcgggttcaat -tccggctggatgcac ->trnI count=1; merged_taxid={145987: 1}; species_name=Gaoligongshania megalothyrsa; family=4479; family_name=Poaceae; scientific_name=Gaoligongshania megalothyrsa; trna=trnI; gbac=NC_024718; taxid=145987; genus_name=Gaoligongshania; rank=species; genus=145986; species=145987; distance=1; Gaoligongshania megalothyrsa chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggtaaatttgcgggttcaac -tcctgctggatgcac ->trnI count=2; merged_taxid={862994: 2}; species_name=Gelidocalamus tessellatus; family=4479; distance=1; scientific_name=Gelidocalamus tessellatus; trna=trnI; gbac=NC_024719; taxid=862994; genus_name=Gelidocalamus; family_name=Poaceae; rank=species; genus=387596; species=862994; Gelidocalamus tessellatus chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggtaaatttgcgggttcaat -tcttgctggatgcac ->trnI count=2; merged_taxid={863024: 2}; species_name=Oligostachyum shiuyingianum; family=4479; distance=1; scientific_name=Oligostachyum shiuyingianum; trna=trnI; gbac=NC_024722; taxid=863024; genus_name=Oligostachyum; family_name=Poaceae; rank=species; genus=281062; species=863024; Oligostachyum shiuyingianum chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggtaaatttgcgggttcaat -tcatgctggatgcac ->trnI count=1; merged_taxid={103032: 1}; species_name=Hanabusaya asiatica; family=4381; family_name=Campanulaceae; scientific_name=Hanabusaya asiatica; trna=trnI; gbac=NC_024732; taxid=103032; genus_name=Hanabusaya; rank=species; genus=103031; species=103032; distance=1; Hanabusaya asiatica voucher Yoo86859 chloroplast, complete genome. -gcatccatggctgaatggttaaagcacccaactcataattggtgaattcgtaggttcaat -tcctactggatgccc ->trnM count=2; merged_taxid={198697: 1, 4679: 1}; species_name=###; family=-1; family_name=###; scientific_name=Petrosaviidae; trna=trnM; taxid=1437197; genus_name=###; rank=no rank; genus=-1; species=-1; Allium cepa genotype normal (N) male fertile chloroplast, complete genome. -acctacttaactcagtggttagagtattgctttcatacggcggaagtcattggttcaaat -ccaatagtaggta ->trnI count=1; merged_taxid={156133: 1}; species_name=Prasinoderma coloniale; family=-1; family_name=###; scientific_name=Prasinoderma coloniale; trna=trnI; gbac=NC_024817; taxid=156133; genus_name=Prasinoderma; rank=species; genus=156132; species=156133; distance=1; Prasinoderma coloniale culture-collection CCMP:1220 chloroplast, complete genome. -tgcatatatggccgagtggtcgaaggcagaggcctcataagcctcctcccgaaagggcaa -cgcgggttcaaatcccgctgtatgcaa ->trnI count=1; merged_taxid={88271: 1}; species_name=Picocystis salinarum; family=-1; family_name=###; scientific_name=Picocystis salinarum; trna=trnI; gbac=NC_024828; taxid=88271; genus_name=Picocystis; rank=species; genus=88270; species=88271; distance=0; Picocystis salinarum culture-collection CCMP:1897 chloroplast, complete genome. -gcatccatggctgagtggtcgaaagcattggactcataatccaaattccattaggaacat -cgttggttcaagtccaactggatgca ->trnM count=1; merged_taxid={88271: 1}; species_name=Picocystis salinarum; family=-1; family_name=###; scientific_name=Picocystis salinarum; trna=trnM; gbac=NC_024828; taxid=88271; genus_name=Picocystis; rank=species; genus=88270; species=88271; distance=0; Picocystis salinarum culture-collection CCMP:1897 chloroplast, complete genome. -gcctgcttagctcagttggttagagcacccgtctcatacgcgggttgtcactagttcaaa -tctagtagcaggca ->trnM count=1; merged_taxid={259378: 1}; species_name=Nephroselmis astigmatica; family=-1; family_name=###; scientific_name=Nephroselmis astigmatica; trna=trnM; gbac=NC_024829; taxid=259378; genus_name=Nephroselmis; rank=species; genus=31311; species=259378; distance=0; Nephroselmis astigmatica culture-collection NIES:252 chloroplast, complete genome. -gcctgcttagctcagttggccagagcatccgtctcatacgcggatcgtcactagttcgaa -tctagtagcaggca ->trnI count=1; merged_taxid={259378: 1}; species_name=Nephroselmis astigmatica; family=-1; family_name=###; scientific_name=Nephroselmis astigmatica; trna=trnI; gbac=NC_024829; taxid=259378; genus_name=Nephroselmis; rank=species; genus=31311; species=259378; distance=1; Nephroselmis astigmatica culture-collection NIES:252 chloroplast, complete genome. -gcatccattgcctagtggccgaaggcattcgactcataatcgaatttccgtaaggacatc -gctggttcgaatccagctggatgcac ->trnfM count=1; merged_taxid={223102: 1}; species_name=Orobanche crenata; family=91896; family_name=Orobanchaceae; scientific_name=Orobanche crenata; trna=trnfM; gbac=NC_024845; taxid=223102; genus_name=Orobanche; rank=species; genus=36747; species=223102; distance=1; Orobanche crenata chloroplast complete genome, specimen voucher BONN:S. Wicke OC41. -cgcggagtagagtagtttggtagctcgcaaggctcataaccttgaggtcacaggttcaaa -tcctgtctccgcaac ->trnM count=1; merged_taxid={223102: 1}; species_name=Orobanche crenata; family=91896; family_name=Orobanchaceae; scientific_name=Orobanche crenata; trna=trnM; gbac=NC_024845; taxid=223102; genus_name=Orobanche; rank=species; genus=36747; species=223102; distance=1; Orobanche crenata chloroplast complete genome, specimen voucher BONN:S. Wicke OC41. -acctacttaactcaatggttagagtattgctttcatacggcgggagtcattggttcaaat -ccaatagtaggta ->trnfM count=1; merged_taxid={50176: 1}; species_name=Amentotaxus formosana; family=25623; family_name=Taxaceae; scientific_name=Amentotaxus formosana; trna=trnfM; gbac=NC_024945; taxid=50176; genus_name=Amentotaxus; rank=species; genus=25624; species=50176; distance=0; Amentotaxus formosana chloroplast DNA, complete sequence. -cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaagccacgggttcaaa -tcccgtctccgcaa ->trnI count=1; merged_taxid={50176: 1}; species_name=Amentotaxus formosana; family=25623; family_name=Taxaceae; scientific_name=Amentotaxus formosana; trna=trnI; gbac=NC_024945; taxid=50176; genus_name=Amentotaxus; rank=species; genus=25624; species=50176; distance=0; Amentotaxus formosana chloroplast DNA, complete sequence. -gcatccatggctgaatggtaaaagcacccaactcataattgggaagtcgcgggttcgatt -cctgctggatgca ->trnfM count=1; merged_taxid={65970: 1}; species_name=Aristida purpurea; family=4479; family_name=Poaceae; scientific_name=Aristida purpurea; trna=trnfM; gbac=NC_025228; taxid=65970; genus_name=Aristida; rank=species; genus=38709; species=65970; distance=1; Aristida purpurea plastid, complete genome. -agcggagtagagcagtttggtagctcacgaggctcataaccttgaggtcacgggttcgat -tcccgtctccgcacc ->trnI count=2; merged_taxid={65975: 2}; species_name=Danthonia californica; family=4479; distance=1; scientific_name=Danthonia californica; trna=trnI; gbac=NC_025232; taxid=65975; genus_name=Danthonia; family_name=Poaceae; rank=species; genus=42047; species=65975; Danthonia californica plastid, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggtaatttgcgggttcaatt -cctgctggatgcac ->trnM count=1; merged_taxid={1056921: 1}; species_name=Elytrophorus spicatus; family=4479; family_name=Poaceae; scientific_name=Elytrophorus spicatus; trna=trnM; gbac=NC_025233; taxid=1056921; genus_name=Elytrophorus; rank=species; genus=57052; species=1056921; distance=0; Elytrophorus spicatus plastid, complete genome. -gcctacttaactcagtggttagagtactgctttcatacggcgggagtcattggttcaaat -ccaatagtaggta ->trnfM count=1; merged_taxid={101708: 1}; species_name=Eustrephus latifolius; family=40552; family_name=Asparagaceae; scientific_name=Eustrephus latifolius; trna=trnfM; gbac=NC_025305; taxid=101708; genus_name=Eustrephus; rank=species; genus=101707; species=101708; distance=2; Eustrephus latifolius plastid, complete genome. -gcgcggagtagagcagtttggtagctcgcaaggctcataatcttgaagtcgcgggttcga -atcccgtctccgcacgc ->trnI count=2; merged_taxid={101708: 2}; species_name=Eustrephus latifolius; family=40552; distance=2; scientific_name=Eustrephus latifolius; trna=trnI; gbac=NC_025305; taxid=101708; genus_name=Eustrephus; family_name=Asparagaceae; rank=species; genus=101707; species=101708; Eustrephus latifolius plastid, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcggattcgtaggttcaat -tcctactggatgcacc ->trnfM count=2; merged_taxid={198697: 1, 59097: 1}; species_name=###; family=56740; distance=1; scientific_name=Alstroemeriaceae; trna=trnfM; taxid=56740; genus_name=###; family_name=Alstroemeriaceae; rank=family; genus=-1; species=-1; Bomarea edulis plastid, complete genome. -cgcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcatgggttcaaa -tcctgtctccgcaac ->trnM count=1; merged_taxid={40981: 1}; species_name=Dictyochloropsis reticulata; family=-1; family_name=###; scientific_name=Dictyochloropsis reticulata; trna=trnM; gbac=NC_025524; taxid=40981; genus_name=Dictyochloropsis; rank=species; genus=40980; species=40981; distance=1; Dictyochloropsis reticulata culture-collection SAG:2150 chloroplast, complete genome. -tgcctgtttagctcagttggttagagcatccgcttcatacgcggattgtcactagttcaa -atctagtaacaggtag ->trnI count=1; merged_taxid={40981: 1}; species_name=Dictyochloropsis reticulata; family=-1; family_name=###; scientific_name=Dictyochloropsis reticulata; trna=trnI; gbac=NC_025524; taxid=40981; genus_name=Dictyochloropsis; rank=species; genus=40980; species=40981; distance=1; Dictyochloropsis reticulata culture-collection SAG:2150 chloroplast, complete genome. -tgcatgcgtggctgagtggtcgatagcaacagactcataatctgtctccgataggacgtc -acaggttcaaaccctgtcgcatgcaa ->trnI count=1; merged_taxid={415195: 1}; species_name=Myrmecia israelensis; family=-1; family_name=###; scientific_name=Myrmecia israelensis; trna=trnI; gbac=NC_025525; taxid=415195; genus_name=Myrmecia; rank=species; genus=114064; species=415195; distance=0; Myrmecia israelensis culture-collection UTEX:1181 chloroplast, complete genome. -gcatacatggctgagcggtcgaaagcggcagactcataatctgtttccgaaaaggacatc -acaggttcgaaccctgttgtatgca ->trnM count=1; merged_taxid={415195: 1}; species_name=Myrmecia israelensis; family=-1; family_name=###; scientific_name=Myrmecia israelensis; trna=trnM; gbac=NC_025525; taxid=415195; genus_name=Myrmecia; rank=species; genus=114064; species=415195; distance=1; Myrmecia israelensis culture-collection UTEX:1181 chloroplast, complete genome. -tgcctacttagctcagtggtagagcgtccgtctcatacgcggaacgtcactagttcaaat -ctagtagtaggcaa ->trnM count=1; merged_taxid={191674: 1}; species_name=Watanabea reniformis; family=-1; family_name=###; scientific_name=Watanabea reniformis; trna=trnM; gbac=NC_025526; taxid=191674; genus_name=Watanabea; rank=species; genus=191672; species=191674; distance=0; Watanabea reniformis culture-collection SAG:211-9b chloroplast, complete genome. -gcctgtttagctcagttggttagagcatccgtctcatacgcggaatgtcactagttcaaa -tctagtagcaggca ->trnI count=1; merged_taxid={191674: 1}; species_name=Watanabea reniformis; family=-1; family_name=###; scientific_name=Watanabea reniformis; trna=trnI; gbac=NC_025526; taxid=191674; genus_name=Watanabea; rank=species; genus=191672; species=191674; distance=0; Watanabea reniformis culture-collection SAG:211-9b chloroplast, complete genome. -gcatgcatggttgagtggtcgataacaacaggctcataatctgttcccttctgggcgtcg -caggttcgagtcctgctgcatgca ->trnI count=1; merged_taxid={37433: 1}; species_name=Stichococcus bacillaris; family=-1; family_name=###; scientific_name=Stichococcus bacillaris; trna=trnI; gbac=NC_025527; taxid=37433; genus_name=Stichococcus; rank=species; genus=29646; species=37433; distance=1; Stichococcus bacillaris culture-collection UTEX:176 chloroplast, complete genome. -tgcacctatggcagagtggtccattgcaccggactcataatccgtttagccgttggttca -aatccaactaggtgcaa ->trnM count=1; merged_taxid={37433: 1}; species_name=Stichococcus bacillaris; family=-1; family_name=###; scientific_name=Stichococcus bacillaris; trna=trnM; gbac=NC_025527; taxid=37433; genus_name=Stichococcus; rank=species; genus=29646; species=37433; distance=0; Stichococcus bacillaris culture-collection UTEX:176 chloroplast, complete genome. -gcctagttagctcagttggtagagcgctcgtctcatacgcgagtggtcactagttcgaac -ctagtactaggca ->trnI count=1; merged_taxid={3083: 1}; species_name='Chlorella' mirabilis; family=-1; family_name=###; scientific_name='Chlorella' mirabilis; trna=trnI; gbac=NC_025528; taxid=3083; genus_name=Chlorella; rank=species; genus=114055; species=3083; distance=1; 'Chlorella' mirabilis culture-collection SAG:38.88 chloroplast, complete genome. -tgcatccatggcagagcggtcgattgcaccgcactcataatgcggttctgaaaagacatc -gttggttcaaacccaactggatgcaa ->trnM count=1; merged_taxid={3083: 1}; species_name='Chlorella' mirabilis; family=-1; family_name=###; scientific_name='Chlorella' mirabilis; trna=trnM; gbac=NC_025528; taxid=3083; genus_name=Chlorella; rank=species; genus=114055; species=3083; distance=0; 'Chlorella' mirabilis culture-collection SAG:38.88 chloroplast, complete genome. -gcctacttagctcagttggtagagcatccgtctcatacgcggattgtcactagttcaaat -ctagtagtaggca ->trnI count=1; merged_taxid={173497: 1}; species_name=Pabia signiensis; family=-1; family_name=###; scientific_name=Pabia signiensis; trna=trnI; gbac=NC_025529; taxid=173497; genus_name=Pabia; rank=species; genus=173496; species=173497; distance=0; Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome. -gcattcatggcagagtggtcgattgcaccgcactcataatgcggttctgaaaagacgtcg -ttggttcaaacccaactgaatgca ->trnM count=2; merged_taxid={173497: 1, 33092: 1}; species_name=###; family=-1; distance=0; scientific_name=Trebouxiophyceae; trna=trnM; taxid=75966; genus_name=###; family_name=###; rank=class; genus=-1; species=-1; Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome. -gcctacttagctcagttggtagagcatccgtctcatacgcggatcgtcactagttcaagt -ctagtagtaggca ->trnI count=1; merged_taxid={160064: 1}; species_name=Pedinomonas tuberculata; family=35424; family_name=Pedinomonadaceae; scientific_name=Pedinomonas tuberculata; trna=trnI; gbac=NC_025530; taxid=160064; genus_name=Pedinomonas; rank=species; genus=3158; species=160064; distance=0; Pedinomonas tuberculata culture-collection SAG:42.84 chloroplast, complete genome. -gcattcatggccgagcggattaggcactcaactcataattgattctaggtaggttcaact -cctactggatgca ->trnM count=2; merged_taxid={160064: 2}; species_name=Pedinomonas tuberculata; family=35424; distance=0; scientific_name=Pedinomonas tuberculata; trna=trnM; gbac=NC_025530; taxid=160064; genus_name=Pedinomonas; family_name=Pedinomonadaceae; rank=species; genus=3158; species=160064; Pedinomonas tuberculata culture-collection SAG:42.84 chloroplast, complete genome. -gcctgcttagctcagttggctagagcatccgtctcatacgcggattgtcactagttcgaa -tctagtagcaggca ->trnI count=1; merged_taxid={33092: 1}; species_name=Koliella longiseta; family=-1; family_name=###; scientific_name=Koliella longiseta; trna=trnI; gbac=NC_025531; taxid=33092; genus_name=Koliella; rank=species; genus=255713; species=33092; distance=0; Koliella longiseta culture-collection UTEX:339 chloroplast, complete genome. -gcatccatggcagagtggtcgattgcaccgcactcataatgcggttctgaaaagacgtcg -ttggttcaaacccaactggatgca ->trnI count=1; merged_taxid={3102: 1}; species_name=Ettlia pseudoalveolaris; family=-1; family_name=###; scientific_name=Ettlia pseudoalveolaris; trna=trnI; gbac=NC_025532; taxid=3102; genus_name=Ettlia; rank=species; genus=577483; species=3102; distance=0; Ettlia pseudoalveolaris culture-collection UTEX:975 chloroplast, complete genome. -gcatccatggcagagtggtcgattgcaccgcactcataatgcggctccgaaaggacatcg -ttggttcaaacccaactggatgca ->trnM count=1; merged_taxid={3102: 1}; species_name=Ettlia pseudoalveolaris; family=-1; family_name=###; scientific_name=Ettlia pseudoalveolaris; trna=trnM; gbac=NC_025532; taxid=3102; genus_name=Ettlia; rank=species; genus=577483; species=3102; distance=0; Ettlia pseudoalveolaris culture-collection UTEX:975 chloroplast, complete genome. -gcctgcttaactcaatcggttagagtattcgtctcatacgcgaaatgttactagttcgag -tctagtagcaggca ->trnI count=1; merged_taxid={312850: 1}; species_name=Lobosphaera incisa; family=35461; family_name=Chlorellaceae; scientific_name=Lobosphaera incisa; trna=trnI; gbac=NC_025533; taxid=312850; genus_name=Lobosphaera; rank=species; genus=63682; species=312850; distance=0; Lobosphaera incisa culture-collection SAG:2007 chloroplast, complete genome. -gcatgtatggctgagtggttgaaagcggcagactcataatctgtttccgaataggacatc -acaggttcgagtcctgttacatgca ->trnM count=1; merged_taxid={312850: 1}; species_name=Lobosphaera incisa; family=35461; family_name=Chlorellaceae; scientific_name=Lobosphaera incisa; trna=trnM; gbac=NC_025533; taxid=312850; genus_name=Lobosphaera; rank=species; genus=63682; species=312850; distance=1; Lobosphaera incisa culture-collection SAG:2007 chloroplast, complete genome. -tgcctgcttagctcagttggttagagcatccgtctcatacgcggaatgtcactagttcaa -atctagtagcaggcaa ->trnI count=1; merged_taxid={480381: 1}; species_name=Xylochloris irregularis; family=-1; family_name=###; scientific_name=Xylochloris irregularis; trna=trnI; gbac=NC_025534; taxid=480381; genus_name=Xylochloris; rank=species; genus=942149; species=480381; distance=4; Xylochloris irregularis culture-collection CAUP:H7801 chloroplast, complete genome. -tgcatgtatggctgaggggtcgaaagcaacagactcataatctgttttccggtcggacac -cgcaggttcaaatcctgttacatgcaacca ->trnM count=1; merged_taxid={480381: 1}; species_name=Xylochloris irregularis; family=-1; family_name=###; scientific_name=Xylochloris irregularis; trna=trnM; gbac=NC_025534; taxid=480381; genus_name=Xylochloris; rank=species; genus=942149; species=480381; distance=0; Xylochloris irregularis culture-collection CAUP:H7801 chloroplast, complete genome. -gcctgcttagctcagttggttagagcatccgtctcatacgcggaatgtcactagttcaag -tctagtagcaggca ->trnI count=1; merged_taxid={1065496: 1}; species_name=Neocystis brevis; family=-1; family_name=###; scientific_name=Neocystis brevis; trna=trnI; gbac=NC_025535; taxid=1065496; genus_name=Neocystis; rank=species; genus=1065495; species=1065496; distance=0; Neocystis brevis culture-collection CAUP:D802 chloroplast, complete genome. -gcatccatggcagagtggtcgattgcaccgcactcataatgcggccccgaaaggacgtcg -ttggttcaaacccaactggatgca ->trnM count=1; merged_taxid={1065496: 1}; species_name=Neocystis brevis; family=-1; family_name=###; scientific_name=Neocystis brevis; trna=trnM; gbac=NC_025535; taxid=1065496; genus_name=Neocystis; rank=species; genus=1065495; species=1065496; distance=1; Neocystis brevis culture-collection CAUP:D802 chloroplast, complete genome. -tgcctgcttagctcagctggttagagcatccgtctcatacgcggaatgtcactagttcaa -atctagtagcaggcaa ->trnI count=1; merged_taxid={155904: 1}; species_name=Koliella corcontica; family=3173; family_name=Klebsormidiaceae; scientific_name=Koliella corcontica; trna=trnI; gbac=NC_025536; taxid=155904; genus_name=Koliella; rank=species; genus=153503; species=155904; distance=0; Koliella corcontica culture-collection SAG:24.84 chloroplast, complete genome. -gcatgcatggctgagtggtcgatagcaacggactcataatccgtctctttttagacatcg -caggttcaaaccctgctgcatgca ->trnM count=2; merged_taxid={155904: 2}; species_name=Koliella corcontica; family=3173; distance=0; scientific_name=Koliella corcontica; trna=trnM; gbac=NC_025536; taxid=155904; genus_name=Koliella; family_name=Klebsormidiaceae; rank=species; genus=153503; species=155904; Koliella corcontica culture-collection SAG:24.84 chloroplast, complete genome. -gcctgcttagctcagctggttagagcgtccgtctcatacgcggattgtcactagttcaaa -tctagtagcaggca ->trnI count=1; merged_taxid={34148: 1}; species_name=Microthamnion kuetzingianum; family=-1; family_name=###; scientific_name=Microthamnion kuetzingianum; trna=trnI; gbac=NC_025537; taxid=34148; genus_name=Microthamnion; rank=species; genus=34147; species=34148; distance=0; Microthamnion kuetzingianum culture-collection UTEX:318 chloroplast, complete genome. -gcatgcatggctgagcggttgaaagcagcagactcataatctgtttccctttagggcaca -caggttcaaatcctgttgcatgca ->trnM count=1; merged_taxid={34148: 1}; species_name=Microthamnion kuetzingianum; family=-1; family_name=###; scientific_name=Microthamnion kuetzingianum; trna=trnM; gbac=NC_025537; taxid=34148; genus_name=Microthamnion; rank=species; genus=34147; species=34148; distance=0; Microthamnion kuetzingianum culture-collection UTEX:318 chloroplast, complete genome. -gcctgcttatctcagttggttagagaatccgtttcatacgcggaatgtcactagttcaaa -tctagtagcaggca ->trnI count=1; merged_taxid={160069: 1}; species_name=Gloeotilopsis sterilis; family=-1; family_name=###; scientific_name=Gloeotilopsis sterilis; trna=trnI; gbac=NC_025538; taxid=160069; genus_name=Gloeotilopsis; rank=species; genus=34156; species=160069; distance=0; Gloeotilopsis sterilis culture-collection UTEX:1704 chloroplast, complete genome. -gcatgcatggctgagtggtcgatagcaacggactcataatccgtatccgaaaggacatcg -caggttcaaaccctgctgcatgct ->trnM count=6; merged_taxid={160069: 2, 163310: 2, 163309: 2}; species_name=###; family=-1; distance=0; scientific_name=Viridiplantae; trna=trnM; taxid=33090; genus_name=###; family_name=###; rank=kingdom; genus=-1; species=-1; Gloeotilopsis sterilis culture-collection UTEX:1704 chloroplast, complete genome. -gcctgcttagctcagttggttagagcatccgtctcatacgcggaatgtcactagttcaaa -tctagtagcaggca ->trnI count=1; merged_taxid={41300: 1}; species_name=Choricystis parasitica; family=-1; family_name=###; scientific_name=Choricystis parasitica; trna=trnI; gbac=NC_025539; taxid=41300; genus_name=Choricystis; rank=species; genus=41299; species=41300; distance=1; Choricystis parasitica culture-collection SAG:17.98 chloroplast, complete genome. -tgcatgtgtggctgagtggttgaaagcagtcgactcataatcgaccttcccttgtggaca -ccgccggttcgaatccggccgcatgtat ->trnM count=1; merged_taxid={41300: 1}; species_name=Choricystis parasitica; family=-1; family_name=###; scientific_name=Choricystis parasitica; trna=trnM; gbac=NC_025539; taxid=41300; genus_name=Choricystis; rank=species; genus=41299; species=41300; distance=0; Choricystis parasitica culture-collection SAG:17.98 chloroplast, complete genome. -gccggtttagcttagtggtagagcgtccgtctcatacgcggaatgtcgtcagttcaaatc -tgacagccggta ->trnI count=1; merged_taxid={249350: 1}; species_name=Paradoxia multiseta; family=-1; family_name=###; scientific_name=Paradoxia multiseta; trna=trnI; gbac=NC_025540; taxid=249350; genus_name=Paradoxia; rank=species; genus=249349; species=249350; distance=1; Paradoxia multiseta culture-collection SAG:18.84 chloroplast, complete genome. -tgcatgcatggctgagtggtcgaaagcgatagactcataatctgttctcattaagagcgc -cgcaggttcaaaccctgttgcatgcaa ->trnI count=1; merged_taxid={415190: 1}; species_name=Planctonema lauterbornii; family=-1; family_name=###; scientific_name=Planctonema lauterbornii; trna=trnI; gbac=NC_025541; taxid=415190; genus_name=Planctonema; rank=species; genus=163319; species=415190; distance=0; Planctonema lauterbornii culture-collection SAG:68.94 chloroplast, complete genome. -gcatccatggcagagtggtcgattgcaccgcactcataatgcggttcctaaaggacatcg -ttggttcaaacccaactggatgca ->trnM count=2; merged_taxid={415190: 2}; species_name=Planctonema lauterbornii; family=-1; distance=0; scientific_name=Planctonema lauterbornii; trna=trnM; gbac=NC_025541; taxid=415190; genus_name=Planctonema; family_name=###; rank=species; genus=163319; species=415190; Planctonema lauterbornii culture-collection SAG:68.94 chloroplast, complete genome. -gcctgcttagctcagctggttagagcatccgtctcatacgcggattgtcactagttcaaa -tctagtagcaggca ->trnI count=1; merged_taxid={163310: 1}; species_name=Interfilum terricola; family=3173; family_name=Klebsormidiaceae; scientific_name=Interfilum terricola; trna=trnI; gbac=NC_025542; taxid=163310; genus_name=Interfilum; rank=species; genus=519230; species=163310; distance=0; Interfilum terricola culture-collection SAG:20.91 chloroplast, complete genome. -gcatgcatggctgagtggtcgatagcagcggactcataatccgtctccgaaaggacatcg -caggttcaaaccctgctgcatgca ->trnI count=1; merged_taxid={106203: 1}; species_name=Fusochloris perforata; family=-1; family_name=###; scientific_name=Fusochloris perforata; trna=trnI; gbac=NC_025543; taxid=106203; genus_name=Fusochloris; rank=species; genus=106202; species=106203; distance=0; Fusochloris perforata culture-collection SAG:28.85 chloroplast, complete genome. -gcatgcatggctgagtggttgaaagcaccagactcataatctgtttcctcttgaaggcac -acaggttcaaatcctgttgcatgca ->trnM count=1; merged_taxid={106203: 1}; species_name=Fusochloris perforata; family=-1; family_name=###; scientific_name=Fusochloris perforata; trna=trnM; gbac=NC_025543; taxid=106203; genus_name=Fusochloris; rank=species; genus=106202; species=106203; distance=1; Fusochloris perforata culture-collection SAG:28.85 chloroplast, complete genome. -gcctgcttagctcagctggttagagcatccgtctcatacgcgggatgtcactagttcaaa -tctagtagcaggcac ->trnI count=1; merged_taxid={163309: 1}; species_name=Geminella minor; family=-1; family_name=###; scientific_name=Geminella minor; trna=trnI; gbac=NC_025544; taxid=163309; genus_name=Geminella; rank=species; genus=163308; species=163309; distance=0; Geminella minor culture-collection SAG:22.88 chloroplast, complete genome. -gcatgcatggctgagtggtcgatagcagcggactcataatccgtatccgaaaggacaacg -caggttcaaaccctgctgcatgca ->trnM count=1; merged_taxid={38881: 1}; species_name=Botryococcus braunii; family=38879; family_name=Botryococcaceae; scientific_name=Botryococcus braunii; trna=trnM; gbac=NC_025545; taxid=38881; genus_name=Botryococcus; rank=species; genus=38880; species=38881; distance=0; Botryococcus braunii culture-collection SAG:807-1 chloroplast, complete genome. -gcctgcttagctcagctggttagagcatccgtctcatacgcgggatgtcactagttcaaa -tctagtagcaggca ->trnI count=1; merged_taxid={38881: 1}; species_name=Botryococcus braunii; family=38879; family_name=Botryococcaceae; scientific_name=Botryococcus braunii; trna=trnI; gbac=NC_025545; taxid=38881; genus_name=Botryococcus; rank=species; genus=38880; species=38881; distance=0; Botryococcus braunii culture-collection SAG:807-1 chloroplast, complete genome. -gcatgtatggctgagaggtcgaaagcaacagactcataatctgttttccagaaggacgcc -acaggttcaaatcctgttacatgca ->trnI count=2; merged_taxid={91190: 2}; species_name=Dicloster acuatus; family=-1; distance=1; scientific_name=Dicloster acuatus; trna=trnI; gbac=NC_025546; taxid=91190; genus_name=Dicloster; family_name=###; rank=species; genus=91189; species=91190; Dicloster acuatus culture-collection SAG:41.98 chloroplast, complete genome. -tgcatccgtggcagagtggtcgattgcaccgcactcataatgcagctcctttgggacatc -gttggttcaagtccaaccggatgcaa ->trnM count=1; merged_taxid={1418016: 1}; species_name=Pseudochloris wilhelmii; family=-1; family_name=###; scientific_name=Pseudochloris wilhelmii; trna=trnM; gbac=NC_025547; taxid=1418016; genus_name=Pseudochloris; rank=species; genus=1418015; species=1418016; distance=3; Pseudochloris wilhelmii culture-collection SAG:1.80 chloroplast, complete genome. -gcctgcttagctcagttggttagagcatccgtctcatacgcggaatgtcactagttcaaa -tctagtagcaggcacca ->trnI count=1; merged_taxid={1418016: 1}; species_name=Pseudochloris wilhelmii; family=-1; family_name=###; scientific_name=Pseudochloris wilhelmii; trna=trnI; gbac=NC_025547; taxid=1418016; genus_name=Pseudochloris; rank=species; genus=1418015; species=1418016; distance=0; Pseudochloris wilhelmii culture-collection SAG:1.80 chloroplast, complete genome. -gcatccatcgctcagtggccgagagcatcgcactcataatgcgacttccatcgtgacgtc -gttggttcgaatccaactggatgca ->trnI count=1; merged_taxid={381761: 1}; species_name=Elliptochloris bilobata; family=-1; family_name=###; scientific_name=Elliptochloris bilobata; trna=trnI; gbac=NC_025548; taxid=381761; genus_name=Elliptochloris; rank=species; genus=381760; species=381761; distance=0; Elliptochloris bilobata culture-collection CAUP:H7103 chloroplast, complete genome. -gcatgcatggccgagtggtcgaaggcggcagactcataatctgttatccgtaaggacatc -gcaggttcaaaccctgctgcatgca ->trnM count=1; merged_taxid={381761: 1}; species_name=Elliptochloris bilobata; family=-1; family_name=###; scientific_name=Elliptochloris bilobata; trna=trnM; gbac=NC_025548; taxid=381761; genus_name=Elliptochloris; rank=species; genus=381760; species=381761; distance=0; Elliptochloris bilobata culture-collection CAUP:H7103 chloroplast, complete genome. -gcctgcttagctcagttggttagagcatccgtctcatacgcgggttgtcactagttcaaa -tctagtagcaggca ->trnI count=1; merged_taxid={97105: 1}; species_name=Marvania geminata; family=35461; family_name=Chlorellaceae; scientific_name=Marvania geminata; trna=trnI; gbac=NC_025549; taxid=97105; genus_name=Marvania; rank=species; genus=97104; species=97105; distance=0; Marvania geminata culture-collection SAG:12.88 chloroplast, complete genome. -gcatccatggcagagaggtcgattgcatcgcactcataatgcgatttcgaaagaacaccg -ttggttcaaacccaactggatgta ->trnM count=1; merged_taxid={97105: 1}; species_name=Marvania geminata; family=35461; family_name=Chlorellaceae; scientific_name=Marvania geminata; trna=trnM; gbac=NC_025549; taxid=97105; genus_name=Marvania; rank=species; genus=97104; species=97105; distance=1; Marvania geminata culture-collection SAG:12.88 chloroplast, complete genome. -tgcctgcgtagctcagttggttagagcgtccgtctcatacgcggaatgtcactagttcga -atctagtcgcaggcaa ->trnfM count=1; merged_taxid={1407619: 1}; species_name=Boulardia latisquama; family=91896; family_name=Orobanchaceae; scientific_name=Boulardia latisquama; trna=trnfM; gbac=NC_025641; taxid=1407619; genus_name=Boulardia; rank=species; genus=1407618; species=1407619; distance=2; Boulardia latisquama plastid, complete genome. -tcgcggggtaggagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttca -aatcctgtcttcgcaat ->trnM count=1; merged_taxid={1407619: 1}; species_name=Boulardia latisquama; family=91896; family_name=Orobanchaceae; scientific_name=Boulardia latisquama; trna=trnM; gbac=NC_025641; taxid=1407619; genus_name=Boulardia; rank=species; genus=1407618; species=1407619; distance=0; Boulardia latisquama plastid, complete genome. -atctacttaactcagtggttagagtattgctttcatacggcaagagtcattggttcaaat -ccaatagtaggta ->trnM count=1; merged_taxid={271221: 1}; species_name=Orobanche californica; family=91896; family_name=Orobanchaceae; scientific_name=Orobanche californica; trna=trnM; gbac=NC_025651; taxid=271221; genus_name=Orobanche; rank=species; genus=36747; species=271221; distance=0; Orobanche californica chloroplast complete genome, specimen voucher PAC:S.Wicke Oc54. -gcctacttaactcagtggttagagtattgctttcatacggtgggagtcattggttcaaat -ccaatagtaggta ->trnM count=1; merged_taxid={204340: 1}; species_name=Genlisea margaretae; family=4196; family_name=Lentibulariaceae; scientific_name=Genlisea margaretae; trna=trnM; gbac=NC_025652; taxid=204340; genus_name=Genlisea; rank=species; genus=192258; species=204340; distance=1; Genlisea margaretae chloroplast, complete genome. -gacctacttaactcagtggttagagtattgctttcatacggcgggagtcattggttcaaa -tccaatagtaggtct ->trnM count=1; merged_taxid={351450: 1}; species_name=Oncinotis tenuiloba; family=4056; family_name=Apocynaceae; scientific_name=Oncinotis tenuiloba; trna=trnM; gbac=NC_025657; taxid=351450; genus_name=Oncinotis; rank=species; genus=351449; species=351450; distance=0; Oncinotis tenuiloba voucher S. Liede 3621 (UBT) plastid, complete genome. -gcctacttaactcagcggttagagtattgctttcatacggcgagagtcattggttcaaat -ccaatagtaggta ->trnfM count=1; merged_taxid={140003: 1}; species_name=Sanionia uncinata; family=52997; family_name=Amblystegiaceae; scientific_name=Sanionia uncinata; trna=trnfM; gbac=NC_025668; taxid=140003; genus_name=Sanionia; rank=species; genus=94483; species=140003; distance=2; Sanionia uncinata chloroplast, complete genome. -cgcggagtagagcagcctggtagctcgcaaggctcataaccttgaggtcatgggttcaaa -tcctgtctccgcta ->trnI count=1; merged_taxid={140003: 1}; species_name=Sanionia uncinata; family=52997; family_name=Amblystegiaceae; scientific_name=Sanionia uncinata; trna=trnI; gbac=NC_025668; taxid=140003; genus_name=Sanionia; rank=species; genus=94483; species=140003; distance=0; Sanionia uncinata chloroplast, complete genome. -gcatccatagctgaacggttaaagcacccaactcataattggagaatccgcaggttcaac -tcctgttggatgca ->trnfM count=2; merged_taxid={97044: 1, 361918: 1}; species_name=###; family=3803; distance=2; scientific_name=Trifolium; trna=trnfM; taxid=3898; genus_name=Trifolium; family_name=Fabaceae; rank=genus; genus=3898; species=-1; Trifolium glanduliferum chloroplast, complete genome. -agcggggtagagcaacttggtagctcgtaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcaacc ->trnM count=1; merged_taxid={337368: 1}; species_name=Erodium crassifolium; family=4027; family_name=Geraniaceae; scientific_name=Erodium crassifolium; trna=trnM; gbac=NC_025906; taxid=337368; genus_name=Erodium; rank=species; genus=21555; species=337368; distance=1; Erodium crassifolium plastid, complete genome. -gcctacttaactcagcggttagagtattgctttcatacggcgggagtcattggttcaaat -ccaatagtaggta ->trnfM count=1; merged_taxid={337368: 1}; species_name=Erodium crassifolium; family=4027; family_name=Geraniaceae; scientific_name=Erodium crassifolium; trna=trnfM; gbac=NC_025906; taxid=337368; genus_name=Erodium; rank=species; genus=21555; species=337368; distance=1; Erodium crassifolium plastid, complete genome. -cgcggagtagagcagcttggtagctcgcaaggctcataaccttgaggtcgcgggttcaaa -tcccgtctccgcaac ->trnfM count=1; merged_taxid={337368: 1}; species_name=Erodium crassifolium; family=4027; family_name=Geraniaceae; scientific_name=Erodium crassifolium; trna=trnfM; gbac=NC_025906; taxid=337368; genus_name=Erodium; rank=species; genus=21555; species=337368; distance=1; Erodium crassifolium plastid, complete genome. -ggcgaggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtccccgcaac ->trnM count=4; merged_taxid={337345: 2, 337380: 2}; species_name=###; family=4027; distance=0; scientific_name=Erodium; trna=trnM; taxid=21555; genus_name=Erodium; family_name=Geraniaceae; rank=genus; genus=21555; species=-1; Erodium gruinum plastid, complete genome. -gcctacttaactcaggggttagagtattgctttcatacggcgggagtcgttggttcaaat -ccaacagtaggta ->trnfM count=1; merged_taxid={34343: 1}; species_name=Stangeria eriopus; family=3298; family_name=Zamiaceae; scientific_name=Stangeria eriopus; trna=trnfM; gbac=NC_026041; taxid=34343; genus_name=Stangeria; rank=species; genus=27029; species=34343; distance=0; Stangeria eriopus chloroplast, complete genome. -tgcggggtagagcagtttggtagctcgcaaggctcataaccttgaggtcatgggttcaaa -tcccgtctccgctg ->trnfM count=1; merged_taxid={138025: 1}; species_name=Acacia ligulata; family=3803; family_name=Fabaceae; scientific_name=Acacia ligulata; trna=trnfM; gbac=NC_026134; taxid=138025; genus_name=Acacia; rank=species; genus=3808; species=138025; distance=1; Acacia ligulata chloroplast complete genome. -cgcggggtagagcagcttggtagctcgcaaggctcataatcttgaggtcacgggttcaaa -tcccgtctccgcaac ->trnM count=1; merged_taxid={692148: 1}; species_name=Scrophularia takesimensis; family=4149; family_name=Scrophulariaceae; scientific_name=Scrophularia takesimensis; trna=trnM; gbac=NC_026202; taxid=692148; genus_name=Scrophularia; rank=species; genus=39249; species=692148; distance=1; Scrophularia takesimensis voucher Choi 20140001 plastid, complete genome. -gcctacttaactcagtggtagagtattgctttcatacggcaggagtcattggttcaaatc -caatagtaggta ->trnI count=2; merged_taxid={989334: 2}; species_name=Campanula takesimana; family=4381; distance=2; scientific_name=Campanula takesimana; trna=trnI; gbac=NC_026203; taxid=989334; genus_name=Campanula; family_name=Campanulaceae; rank=species; genus=40568; species=989334; Campanula takesimana chloroplast, complete genome. -gcatccatggctgaatggttaaagcacccaactcataattggcgaattcgtaggttcaat -tcctactggatgcacc ->trnI count=1; merged_taxid={1592803: 1}; species_name=Orthotrichum rogeri; family=52989; family_name=Orthotrichaceae; scientific_name=Orthotrichum rogeri; trna=trnI; gbac=NC_026212; taxid=1592803; genus_name=Orthotrichum; rank=species; genus=52990; species=1592803; distance=1; Orthotrichum rogeri chloroplast, complete genome. -gcatccatagctgaacggttaaagcacccaactcataattggagaattcgcaggttcaac -tcctgttggatgcac ->trnfM count=1; merged_taxid={1592803: 1}; species_name=Orthotrichum rogeri; family=52989; family_name=Orthotrichaceae; scientific_name=Orthotrichum rogeri; trna=trnfM; gbac=NC_026212; taxid=1592803; genus_name=Orthotrichum; rank=species; genus=52990; species=1592803; distance=2; Orthotrichum rogeri chloroplast, complete genome. -cgcggagtagagcagcctggtagctcgcaaggctcataaccttgaggtcatgggttcaaa -tcccgtctccgcta ->trnM count=1; merged_taxid={4615: 1}; species_name=Ananas comosus; family=4613; family_name=Bromeliaceae; scientific_name=Ananas comosus; trna=trnM; gbac=NC_026220; taxid=4615; genus_name=Ananas; rank=species; genus=4614; species=4615; distance=1; Ananas comosus chloroplast DNA, complete genome. -tacctacttaactcagtggttagagtattgctttcatacggcaggagtcattggttcaaa -tccaatagtaggtag ->trnfM count=4; merged_taxid={48929: 1, 85954: 1, 13469: 1, 257623: 1}; species_name=###; family=3367; distance=1; scientific_name=Cupressaceae; trna=trnfM; taxid=3367; genus_name=###; family_name=Cupressaceae; rank=family; genus=-1; species=-1; Callitropsis nootkatensis plastid, complete genome. -cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaagtcatgggttcaaa -tcccgtctccgcaa ->trnM count=1; merged_taxid={13469: 1}; species_name=Cupressus sempervirens; family=3367; family_name=Cupressaceae; scientific_name=Cupressus sempervirens; trna=trnM; gbac=NC_026296; taxid=13469; genus_name=Cupressus; rank=species; genus=13468; species=13469; distance=0; Cupressus sempervirens plastid, complete genome. -acctacttaactcagtggttagagtatcgttttcatacggcgagagtcattggttcaaat -ccaatagtaggta ->trnM count=1; merged_taxid={3382: 1}; species_name=Gnetum gnemon; family=3379; family_name=Gnetaceae; scientific_name=Gnetum gnemon; trna=trnM; gbac=NC_026301; taxid=3382; genus_name=Gnetum; rank=species; genus=3380; species=3382; distance=0; Gnetum gnemon plastid, complete genome. -acctacttaactcagtggttagagtatcgctttcatacggcgagagtcattggttcaagt -ccaatagtaggta ->trnfM count=1; merged_taxid={556037: 1}; species_name=Epipogium roseum; family=4747; family_name=Orchidaceae; scientific_name=Epipogium roseum; trna=trnfM; gbac=NC_026448; taxid=556037; genus_name=Epipogium; rank=species; genus=449979; species=556037; distance=0; Epipogium roseum plastid, complete genome. -agcgggatatagcagcttggtagctaataaggctcataaccttgaagtcgtgggttcaaa -tcccattcccgcaa ->trnI count=1; merged_taxid={556037: 1}; species_name=Epipogium roseum; family=4747; family_name=Orchidaceae; scientific_name=Epipogium roseum; trna=trnI; gbac=NC_026448; taxid=556037; genus_name=Epipogium; rank=species; genus=449979; species=556037; distance=0; Epipogium roseum plastid, complete genome. -gtatccatggctgaaaggttaaagcactcaactcataattggaaaatttgtgggttcaat -tcctgctggatgca ->trnfM count=1; merged_taxid={449980: 1}; species_name=Epipogium aphyllum; family=4747; family_name=Orchidaceae; scientific_name=Epipogium aphyllum; trna=trnfM; gbac=NC_026449; taxid=449980; genus_name=Epipogium; rank=species; genus=449979; species=449980; distance=1; Epipogium aphyllum plastid, complete genome. -ttgtgggatatagcagtttggtagctaacaaggctcataacctcgaggtcatgggttcaa -atcccattcccgcaaa ->trnI count=2; merged_taxid={449980: 2}; species_name=Epipogium aphyllum; family=4747; distance=1; scientific_name=Epipogium aphyllum; trna=trnI; gbac=NC_026449; taxid=449980; genus_name=Epipogium; family_name=Orchidaceae; rank=species; genus=449979; species=449980; Epipogium aphyllum plastid, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggaaaagttgtgggttcaat -tcctgctagatgcac ->trnfM count=1; merged_taxid={34341: 1}; species_name=Araucaria heterophylla; family=25664; family_name=Araucariaceae; scientific_name=Araucaria heterophylla; trna=trnfM; gbac=NC_026450; taxid=34341; genus_name=Araucaria; rank=species; genus=25666; species=34341; distance=1; Araucaria heterophylla plastid, complete genome. -ttgcggggtagagcagcttggtagctcgcgaggctcataaccttgaggtcacgggttcaa -atcccgtctccgctag ->trnI count=1; merged_taxid={34341: 1}; species_name=Araucaria heterophylla; family=25664; family_name=Araucariaceae; scientific_name=Araucaria heterophylla; trna=trnI; gbac=NC_026450; taxid=34341; genus_name=Araucaria; rank=species; genus=25666; species=34341; distance=0; Araucaria heterophylla plastid, complete genome. -gcatctagggctgaatggtcaaagcgcccaactcataattgggaagtcacgggttcaatt -cctgctggatgca ->trnfM count=1; merged_taxid={125431: 1}; species_name=Masdevallia coccinea; family=4747; family_name=Orchidaceae; scientific_name=Masdevallia coccinea; trna=trnfM; gbac=NC_026541; taxid=125431; genus_name=Masdevallia; rank=species; genus=78804; species=125431; distance=0; Masdevallia coccinea chloroplast, complete genome. -cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcctgtctccgcaa ->trnM count=1; merged_taxid={125431: 1}; species_name=Masdevallia coccinea; family=4747; family_name=Orchidaceae; scientific_name=Masdevallia coccinea; trna=trnM; gbac=NC_026541; taxid=125431; genus_name=Masdevallia; rank=species; genus=78804; species=125431; distance=1; Masdevallia coccinea chloroplast, complete genome. -tacctacttaacccagtggttagagtattgctttcatatggcgggagtcattggttcaaa -tccaatagtaggtag ->trnfM count=1; merged_taxid={3483: 1}; species_name=Cannabis sativa; family=3481; family_name=Cannabaceae; scientific_name=Cannabis sativa; trna=trnfM; gbac=NC_026562; taxid=3483; genus_name=Cannabis; rank=species; genus=3482; species=3483; distance=0; Cannabis sativa cultivar Carmagnola chloroplast, complete genome. -cgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcaa ->trnM count=1; merged_taxid={1605147: 1}; species_name=Cattleya crispata; family=4747; family_name=Orchidaceae; scientific_name=Cattleya crispata; trna=trnM; gbac=NC_026568; taxid=1605147; genus_name=Cattleya; rank=species; genus=38236; species=1605147; distance=1; Cattleya crispata chloroplast, complete genome. -acctacttaacccagtggttagagtattgctttcatacggcggaagtcattggttcaaat -ccaatagtaggta ->trnM count=1; merged_taxid={35938: 1}; species_name=Robinia pseudoacacia; family=3803; family_name=Fabaceae; scientific_name=Robinia pseudoacacia; trna=trnM; gbac=NC_026684; taxid=35938; genus_name=Robinia; rank=species; genus=35937; species=35938; distance=0; Robinia pseudoacacia chloroplast, complete genome. -acctacttaactcagtggttagagtatagctttcatacggctagagtcattggttcaaat -ccaatagtaggta ->trnfM count=1; merged_taxid={58860: 1}; species_name=Tamarindus indica; family=3803; family_name=Fabaceae; scientific_name=Tamarindus indica; trna=trnfM; gbac=NC_026685; taxid=58860; genus_name=Tamarindus; rank=species; genus=58859; species=58860; distance=1; Tamarindus indica chloroplast, complete genome. -tcgcggggtagagcagcttggtagctcgcaaggctcataaccttgaggtcacgggttcaa -atcccgtctccgcaaa ->trnfM count=3; merged_taxid={3625: 2, 3627: 1}; species_name=###; family=3623; distance=2; scientific_name=Actinidia; trna=trnfM; taxid=3624; genus_name=Actinidia; family_name=Actinidiaceae; rank=genus; genus=3624; species=-1; Actinidia chinensis isolate AC-2 chloroplast, complete genome. -ggcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacaggttcaaa -tcccgtctccgcacc ->trnfM count=1; merged_taxid={3627: 1}; species_name=Actinidia deliciosa; family=3623; family_name=Actinidiaceae; scientific_name=Actinidia deliciosa; trna=trnfM; gbac=NC_026691; taxid=3627; genus_name=Actinidia; rank=species; genus=3624; species=3627; distance=2; Actinidia deliciosa isolate AD-4 chloroplast, complete genome. -ggcggagtagagcaggttggtagctcgcaaggctcataaccttgaggtcacaggttcaaa -tcccgtctccgcacc ->trnM count=1; merged_taxid={125444: 1}; species_name=Masdevallia picturata; family=4747; family_name=Orchidaceae; scientific_name=Masdevallia picturata; trna=trnM; gbac=NC_026777; taxid=125444; genus_name=Masdevallia; rank=species; genus=78804; species=125444; distance=1; Masdevallia picturata chloroplast, complete genome. -acctacttaacccagtggttagagtattgctttcatatggcgggagtcattggttcaaat -ccaatagtaggta ->trnfM count=1; merged_taxid={51239: 1}; species_name=Vanilla planifolia; family=4747; family_name=Orchidaceae; scientific_name=Vanilla planifolia; trna=trnfM; gbac=NC_026778; taxid=51239; genus_name=Vanilla; rank=species; genus=51238; species=51239; distance=1; Vanilla planifolia chloroplast, complete genome. -cgcggagtagagcagtctggtagctcgcaaggctcataaccttgaggtcatgggttcaaa -tcccgtctccgcaac ->trnI count=2; merged_taxid={51239: 2}; species_name=Vanilla planifolia; family=4747; distance=1; scientific_name=Vanilla planifolia; trna=trnI; gbac=NC_026778; taxid=51239; genus_name=Vanilla; family_name=Orchidaceae; rank=species; genus=51238; species=51239; Vanilla planifolia chloroplast, complete genome. -gcatccatggctgaatggttaaagcgcccaactcataattggcaaactcgtaggttcaat -tcctactggatgcac ->trnM count=1; merged_taxid={3130: 1}; species_name=Bryopsis plumosa; family=3127; family_name=Bryopsidaceae; scientific_name=Bryopsis plumosa; trna=trnM; gbac=NC_026795; taxid=3130; genus_name=Bryopsis; rank=species; genus=3128; species=3130; distance=0; Bryopsis plumosa chloroplast complete genome, strain West4718. -gcctatttagctcagatggttagagcattcgtctcatacgcggaaagtcactagttcgaa -tctagtaataggca ->trnI count=1; merged_taxid={3130: 1}; species_name=Bryopsis plumosa; family=3127; family_name=Bryopsidaceae; scientific_name=Bryopsis plumosa; trna=trnI; gbac=NC_026795; taxid=3130; genus_name=Bryopsis; rank=species; genus=3128; species=3130; distance=1; Bryopsis plumosa chloroplast complete genome, strain West4718. -tgcatgtatggctgagtggtcaaaagcgacggactcataatccgttttcattgaatatcg -caggttcaagtcctgctacatgcaa ->trnM count=1; merged_taxid={325645: 1}; species_name=Tydemania expeditionis; family=35435; family_name=Udoteaceae; scientific_name=Tydemania expeditionis; trna=trnM; gbac=NC_026796; taxid=325645; genus_name=Tydemania; rank=species; genus=325644; species=325645; distance=0; Tydemania expeditionis chloroplast complete genome, strain FL1151. -gcctatttagctcaattggtaagagcgtccgtttcatacgcggaaggttactagttcaat -tctagtaataggca ->trnI count=1; merged_taxid={325645: 1}; species_name=Tydemania expeditionis; family=35435; family_name=Udoteaceae; scientific_name=Tydemania expeditionis; trna=trnI; gbac=NC_026796; taxid=325645; genus_name=Tydemania; rank=species; genus=325644; species=325645; distance=0; Tydemania expeditionis chloroplast complete genome, strain FL1151. -gcatatatggctgagtggtcgaaagcgatggactcataatccatttccaattttaggaca -acgtaggttcaaaccctactatatgca ->trnfM count=1; merged_taxid={105884: 1}; species_name=Lonicera japonica; family=4200; family_name=Caprifoliaceae; scientific_name=Lonicera japonica; trna=trnfM; gbac=NC_026839; taxid=105884; genus_name=Lonicera; rank=species; genus=49606; species=105884; distance=0; Lonicera japonica chloroplast, complete genome. -cgcggagtagagcagtttggtagctcgcaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcaa ->trnfM count=1; merged_taxid={1495044: 1}; species_name=Quercus aquifolioides; family=3503; family_name=Fagaceae; scientific_name=Quercus aquifolioides; trna=trnfM; gbac=NC_026913; taxid=1495044; genus_name=Quercus; rank=species; genus=3511; species=1495044; distance=1; Quercus aquifolioides chloroplast, complete genome. -cgcggggtagagcagcttggtagctcacaaggctcataaccttgaggtcacgggttcaaa -tcccgtctccgcaac diff --git a/detectors/trna/tools/buildCAURefDB.sh b/detectors/trna/tools/buildCAURefDB.sh new file mode 100755 index 0000000..d0e5d37 --- /dev/null +++ b/detectors/trna/tools/buildCAURefDB.sh @@ -0,0 +1,124 @@ +#!/bin/bash +# +# BUILD REFERENCE THE CAU TRNA LIBRARy +# +#======================================================================================== + +# -- CAUTION -- Works as long than the script +# is not called through a symlink +SCRIPT_DIR="$(dirname ${BASH_SOURCE[0]})" +source "${SCRIPT_DIR}/../../../scripts/bash_init.sh" + +function fasta1li { + + awk '/^>/ {if (sequence) \ + {print sequence}; \ + print $0; \ + sequence=""} \ + !/^>/ {sequence = sequence $0} \ + END {print sequence}' $1 +} + +function dereplicate { + DATA=$1 + sumaclust -t 1 $DATA | \ + fasta1li | \ + grep -A 1 '^>' | \ + grep -A1 'cluster_center=True;' | \ + grep -v -- -- | \ + sed -E "s/count=[0-9]+; //" | \ + sed 's/cluster_weight/count/' | \ + awk ' /^>/ {SEQ++;$1=$1"_"SEQ;print $0} \ + !/^>/ {print $0}' +} + +function extractSeqs { + rm -f $$.index + fastaindex -f $1 \ + -i $$.index + + for id in `cat $2`; do + fastafetch -f $1 \ + -i $$.index \ + -q $id + done + + rm -f $$.index +} + +function goodtrna { + local QUERY=$1 + local REF=$2 + sumatra -t 0.90 -x $QUERY $REF | \ + sed -E 's/.(trn.M?)[_A-Z0-9]+/ \1 /' | \ + sort -k 1,2 | \ + awk '(OLD) && ($1!=OLD) {print OLD,c["trnM"],c["trnfM"],c["trnI"]} \ + (OLD !=$1) {c["trnM"]=0;c["trnfM"]=0;c["trnI"]=0;OLD=$1} \ + {c[$2]+=$5}' | awk '{p=0;} \ + ($2 > $3) && ($2 > $4) { print $0,"trnM";p=1 } \ + ($3 > $2) && ($3 > $4) {print $0,"trnfM";p=1} \ + ($4 > $2) && ($4 > $3) {print $0,"trnI";p=1} \ + (p==0) {print $0,"----"}' | sed 's/_/ /' | \ + awk '{print $1"_"$2,$3,$4,$5,$1,$6}' | \ + awk '(($2+$3+$4) > 1) && ($5==$6) {print $1}' +} + +pushTmpDir ORG.buildSCDB + + CAUFILE=CAU.fasta + + openLogFile "${TRNA_DATA_DIR}/CAU_tRNA_DB.log" + + loginfo "Selecting Viridiplantae genebank entries..." + VIRIDIPLANTAE=$(${PROG_DIR}/../../normalize/tools/selectViridiplantae.sh $*) + loginfo " --> $(echo ${VIRIDIPLANTAE} | wc -w) entries selected" + loginfo "Done" + + loginfo "Extracting the CAU tRNA from the plants entries..." + ${PROG_DIR}/extract_refCAUtRNA.sh ${VIRIDIPLANTAE} | \ + fasta1li | \ + egrep -A 1 '^>trn(I|M|fM)' | \ + grep -v -- -- > ${CAUFILE} + loginfo "Done" + + loginfo "Sorting the CAU tRNA..." + + loginfo "Extract and dereplicate trnI..." + egrep -A 1 '^>trnI_' ${CAUFILE} | grep -v -- -- > trnI.fasta + dereplicate trnI.fasta > trnCAU.fasta + + loginfo "Extract and dereplicate trnM..." + egrep -A 1 '^>trnM_' ${CAUFILE} | grep -v -- -- > trnM.fasta + dereplicate trnM.fasta >> trnCAU.fasta + + loginfo "Extract and dereplicate trnfM..." + egrep -A 1 '^>trnfM_' ${CAUFILE} | grep -v -- -- > trnfM.fasta + dereplicate trnfM.fasta >> trnCAU.fasta + + loginfo "Done" + + loginfo "Cleaning the CAU tRNA..." + + loginfo "First pass..." + + goodtrna trnCAU.fasta trnCAU.fasta > trnCAU.good.ids + extractSeqs trnCAU.fasta trnCAU.good.ids > trnCAU.good.fasta + + loginfo " --> $(wc -l trnCAU.good.ids) sequences kept" + + loginfo "Second pass..." + + goodtrna trnCAU.fasta trnCAU.good.fasta > trnCAU.good.ids + extractSeqs trnCAU.fasta trnCAU.good.ids > trnCAU.good.fasta + + loginfo " --> $(wc -l trnCAU.good.ids) sequences kept" + + loginfo "Done" + + loginfo "Installing the CAU tRNA database..." + + cp trnCAU.good.fasta "${TRNA_DATA_DIR}/CAU_tRNA_DB.fasta" + + loginfo "Done" + +popTmpDir \ No newline at end of file diff --git a/detectors/trna/tools/extract_refCAUtRNA.sh b/detectors/trna/tools/extract_refCAUtRNA.sh new file mode 100755 index 0000000..5c4e761 --- /dev/null +++ b/detectors/trna/tools/extract_refCAUtRNA.sh @@ -0,0 +1,129 @@ +#!/bin/bash +# +# BUILD REFERENCE THE CAU TRNA LIBRARy +# +#======================================================================================== + +# -- CAUTION -- Works as long than the script +# is not called through a symlink +SCRIPT_DIR="$(dirname ${BASH_SOURCE[0]})" +source "${SCRIPT_DIR}/../../../scripts/bash_init.sh" + +function taxid { + egrep '/db_xref="taxon:[0-9]+"' $1 | \ + sed -E 's@ +/db_xref="taxon:([0-9]+)"@\1@' +} + +function ac { + head -1 $1 | awk '{print $2}' +} + +function definition { + awk '/^DEFINITION/ {on=1} \ + (on==1) {printf("%s ",$0)} \ + (/\.$/ && (on==1)) {on=0;print ""}' $1 | \ + sed 's/^DEFINITION *//' | \ + sed 's/ *$//' +} + +function gb2fasta { + AC=`ac $1` + TAXID=`taxid $1` + DEFINITION=`definition $1` + + echo ">${AC} taxid=${TAXID}; ${DEFINITION}" + + awk '/^\/\// {on=0} \ + (on==1) {print $0} \ + /^ORIGIN / {on=1}' $1 | \ + sed -E 's/^ *[0-9]+ +//' | \ + sed 's/ //g' +} + +function findCAUtrna { + + FASTATMP="$$.genome.fasta" + + gb2fasta $1 > ${FASTATMP} + aragorn -i -w -seq ${FASTATMP} | \ + awk '(on==1) && /^ *[0-9]+/ {on=0;print ""} \ + (on==1) {printf($0)} \ + /\(cat\)$/ {on=1; printf("%s ",$0)} \ + END {print ""}' | \ + awk '{print $3,$6}' | \ + sed -E 's/c?\[([0-9]+),([0-9]+)\]/\1 \2/' | \ + sed 's/ /:/g' + + rm ${FASTATMP} +} + +function trnaAnnotations { + awk '/^ORIGIN/ {on=0} \ + (on==1) {print $0} \ + /^FEATURE/ {on=1}' $1 | \ + awk '/^ [^ ]/ {print ""} \ + {printf("%s ",$0)} \ + END {print ""}' | \ + sed 's/^ *//' | \ + sed -E 's/ +/ /g' | \ + grep '^tRNA' | grep '/gene="' | \ + sed -E 's/([0-9]+)\.\.([0-9]+)/\1 \2/g' | \ + sed -E 's/ [0-9]+,[0-9]+ / /g' | \ + grep -v '>' | \ + grep -v '<' | \ + sed -E 's/join\(([0-9]+ [0-9]+)\)/\1/' | \ + sed -E 's/complement\(([0-9]+ [0-9]+)\)/\1/' | \ + sed -E 's/join\(([0-9]+ [0-9]+)\)/\1/' | \ + sed 's/^tRNA *//' | \ + sed -E 's@([0-9]+) +([0-9]+).*/gene="([^"]+)"@\1 \2 \3@' | \ + awk '{print $1,$2,$3}' +} + +function annotateCAU { + DISTTMP="$$.trna.dist" + trna=(`echo $1 | sed 's/:/ /g'`) + awk -v b=${trna[0]} -v e=${trna[1]} \ + '{printf("sqrt((%d - %d)^2 + (%d - %d)^2)\n",$1,b,$2,e)}' $2 | \ + bc -l | \ + sed 's/\..*$//' > ${DISTTMP} + paste ${DISTTMP} $2 | sort -nk 1 | head -1 | awk '{print $1,$4}' + rm -f ${DISTTMP} +} + +function writeTRNA { + TAXID=`taxid $1` + AC=`ac $1` + DEFINITION=`definition $1` + + TRNATMP="$$.trna.txt" + + trnaAnnotations $1 > ${TRNATMP} + ntrna=`wc -l ${TRNATMP} | awk '{print $1}'` + + if (( ntrna > 0 )); then + trnacau=`findCAUtrna $1` + + for t in $trnacau; do + AA=(`annotateCAU $t ${TRNATMP}`) + distance=${AA[0]} + aa=`echo ${AA[1]} | sed -E 's/(t(rn|RNA)-?)?(I|M|fM).*$/trn\3/'` + + if (( distance <= 10 )); then + echo ">${aa}_${AC} gbac=${AC}; trna=${aa}; taxid=${TAXID}; distance=${distance}; ${DEFINITION}" + echo "$t" | awk -F ':' '{print $3}' + fi + done + fi + + rm -f ${TRNATMP} +} + +pushTmpDir ORG.buildCAUtRNA + + for gb in $*; do + writeTRNA $gb + done + +popTmpDir + + diff --git a/detectors/trna/tools/reannoteCAURefDB.sh b/detectors/trna/tools/reannoteCAURefDB.sh deleted file mode 100755 index 839ee05..0000000 --- a/detectors/trna/tools/reannoteCAURefDB.sh +++ /dev/null @@ -1,24 +0,0 @@ -#!/bin/bash - -SUMATRA=`dirname $0`/sumatra - -function annotateCAU { - QUERY="$$.query.fasta" - echo $1 | sed 's/&/ /' | tr '@' '\n' > ${QUERY} - ${SUMATRA} -d -n ${QUERY} $2 2> /dev/null | \ - awk ' {n[$2]+=1;d[$2]+=$3} \ - END {for (i in n) \ - print i, n[i],d[i], d[i]/n[i]\ - }' | \ - sort -rnk4 | \ - egrep '^trn(I|M|fM)' | \ - tail -1 | \ - awk '{print $1,$NF}' - rm -rf ${QUERY} -} - - -for seq in `awk '(on==1) && /^>/ {print "";on=0} /^>/ {printf("%s@",$0)} ! /^>/ {on=1;printf($0)}' $1 | tr ' ' '&'`; do - new=(`annotateCAU ${seq} $1`) - echo $seq | sed 's/&/ /g' | sed -E 's/>([^ ]+) />'${new[0]}' /' | tr '@' '\n' -done \ No newline at end of file diff --git a/scripts/bash_init.sh b/scripts/bash_init.sh index 5db5c79..161518b 100644 --- a/scripts/bash_init.sh +++ b/scripts/bash_init.sh @@ -142,6 +142,9 @@ CALL_DIR="$(getAbsolutePath $(pwd))" # Directory from where the main IR_DATA_DIR="${DATA_DIR}/ir" # Directory containing data related to the # Inverted repeat strucuture +TRNA_DATA_DIR="${DATA_DIR}/trna" # Directory containing data related to the + # Inverted repeat strucuture + # #