diff --git a/detectors/cds/bin/do_rps12.sh b/detectors/cds/bin/do_rps12.sh index 882341e..e07a412 100755 --- a/detectors/cds/bin/do_rps12.sh +++ b/detectors/cds/bin/do_rps12.sh @@ -371,7 +371,7 @@ blastx \ n = split($0,parts,",") j = 1 for (i = 1; i <= n; i++) { - if (length(line) + length(parts[i]) > 79) { + if (length(line) + length(parts[i]) > 78) { print line "," line = "FT " j = i diff --git a/detectors/cds/lib/toEmbl.awk b/detectors/cds/lib/toEmbl.awk index 3484699..73983ff 100644 --- a/detectors/cds/lib/toEmbl.awk +++ b/detectors/cds/lib/toEmbl.awk @@ -160,11 +160,11 @@ function Unk(s) { gname = (Ngene == 1 ? GeneName : GeneName "_" ++Igene) locus = "" - Feature("gene", GeneLocation()) - QQualifier("gene", gname) - QQualifier("locus_tag", locus) - if (FrameShift) - QQualifier("pseudogene","unknown") + # Feature("gene", GeneLocation()) + #QQualifier("gene", gname) + #QQualifier("locus_tag", locus) + #if (FrameShift) + # QQualifier("pseudogene","unknown") Feature("CDS", CdsLocation()) SQualifier("codon_start", 1) @@ -180,7 +180,7 @@ function Unk(s) { } QQualifier("product", Product) QQualifier("inference", "similar to DNA sequence:" Simil) - QQualifier("inference", "org.annot -- detect pass:" PassType ":" PassInfo) + # QQualifier("inference", "org.annot -- detect pass:" PassType ":" PassInfo) if (FrameShift==0) { if (match(Translat,/\*/)>0) { QQualifier("pseudogene","unknown") diff --git a/detectors/trna/lib/aragorn_wrapper.awk b/detectors/trna/lib/aragorn_wrapper.awk index 29fa5cc..cdda0ca 100755 --- a/detectors/trna/lib/aragorn_wrapper.awk +++ b/detectors/trna/lib/aragorn_wrapper.awk @@ -168,7 +168,7 @@ function emblTRNA(geneid,trna,loc,anti,intron,notes,seq) { print "FT /gene=\""trna"\""; print "FT /anticodon=\""anti"\""; print "FT /product=\""product"("anti")\""; - print "FT /inference=\"Aragorn-1.2.38\""; +# print "FT /inference=\"Aragorn-1.2.38\""; if (notes!="-") print "FT /note=\""notes"\"";