diff --git a/detectors/cds/bin/do_exonerate.sh b/detectors/cds/bin/do_exonerate.sh index 4985767..bb4d810 100755 --- a/detectors/cds/bin/do_exonerate.sh +++ b/detectors/cds/bin/do_exonerate.sh @@ -1,4 +1,4 @@ -#!/bin/csh -f +#!/bin/env tcsh -f # # Annotate CDS - Exonerate # diff --git a/detectors/cds/bin/do_filterbx.sh b/detectors/cds/bin/do_filterbx.sh index ea51b63..c2a283a 100755 --- a/detectors/cds/bin/do_filterbx.sh +++ b/detectors/cds/bin/do_filterbx.sh @@ -1,4 +1,4 @@ -#!/bin/csh -f +#!/bin/env tcsh -f # # filter a DB thru BlastX # usually to speedup further DB search diff --git a/detectors/cds/bin/go_cds.sh b/detectors/cds/bin/go_cds.sh index 487d458..67dda2b 100755 --- a/detectors/cds/bin/go_cds.sh +++ b/detectors/cds/bin/go_cds.sh @@ -1,4 +1,4 @@ -#!/bin/csh -f +#!/bin/env tcsh -f # # Annotate CDS # diff --git a/detectors/cds/test/go_test.sh b/detectors/cds/test/go_test.sh index fad2596..a1e4742 100755 --- a/detectors/cds/test/go_test.sh +++ b/detectors/cds/test/go_test.sh @@ -1,4 +1,4 @@ -#!/bin/csh -f +#!/bin/env tcsh -f setenv Verbose 0 diff --git a/src/Makefile b/src/Makefile index 9bb5afb..de5b6fb 100755 --- a/src/Makefile +++ b/src/Makefile @@ -31,7 +31,8 @@ DIRS = aragorn \ sumatra \ gawk \ getopt \ - cd-hit + cd-hit \ + tcsh include ../config/targets/propagate.targ diff --git a/src/tcsh/Makefile b/src/tcsh/Makefile new file mode 100644 index 0000000..86b7ddf --- /dev/null +++ b/src/tcsh/Makefile @@ -0,0 +1,25 @@ +# --------------------------------------------------------------- +# $Id: $ +# --------------------------------------------------------------- +# @file: Makefile +# @desc: makefile for package exonerate +# +# @history: +# @+ : Sept 15 : Adapted to ORG.Annot +# +# @note: should be processed with gnu compatible make +# @note: helixware_compatible +# +# @end: +# --------------------------------------------------------------- +# + +include ../../config/auto.conf + +PKG = tcsh-6.19.00 + +MAKEOPTIONS= openmp=no PREFIX=$(PRTPATH)/bin + +include $(CFGDIR)targets/package.targ + +include $(CFGDIR)targets/help.targ diff --git a/src/tcsh/tcsh-6.19.00.tgz b/src/tcsh/tcsh-6.19.00.tgz new file mode 100644 index 0000000..63907e2 Binary files /dev/null and b/src/tcsh/tcsh-6.19.00.tgz differ