diff --git a/detectors/cds/test/test.db/core/Annot.lst b/detectors/cds/test/test.db/core/Annot.lst index b1d9e74..56be5ad 100644 --- a/detectors/cds/test/test.db/core/Annot.lst +++ b/detectors/cds/test/test.db/core/Annot.lst @@ -14,5 +14,3 @@ rpl23 rpl23 787 1:782_2:2_3:1_4:2 POLYEX ribosomal_protein_L23 rpl32 rpl32 474 1:474 MONEX ribosomal_protein_L32 rps15 rps15 480 1:479_2:1 POLYEX ribosomal_protein_S15 rps7 rps7 853 1:853 MONEX ribosomal_protein_S7 -ycf1 ycf1 408 1:406_2:2 POLYEX hypothetical_chloroplast_RF1 -ycf2 ycf2 654 1:649_2:5 POLYEX Ycf2 diff --git a/detectors/cds/test/test.db/shell/Annot.lst b/detectors/cds/test/test.db/shell/Annot.lst new file mode 100644 index 0000000..7648c4a --- /dev/null +++ b/detectors/cds/test/test.db/shell/Annot.lst @@ -0,0 +1,2 @@ +ycf1 ycf1 408 1:406_2:2 POLYEX hypothetical_chloroplast_RF1 +ycf2 ycf2 654 1:649_2:5 POLYEX Ycf2 diff --git a/detectors/cds/test/test.db/core/ycf1.fst b/detectors/cds/test/test.db/shell/ycf1.fst similarity index 100% rename from detectors/cds/test/test.db/core/ycf1.fst rename to detectors/cds/test/test.db/shell/ycf1.fst diff --git a/detectors/cds/test/test.db/shell/ycf1.fst.phr b/detectors/cds/test/test.db/shell/ycf1.fst.phr new file mode 100644 index 0000000..a7d2cfc Binary files /dev/null and b/detectors/cds/test/test.db/shell/ycf1.fst.phr differ diff --git a/detectors/cds/test/test.db/shell/ycf1.fst.pin b/detectors/cds/test/test.db/shell/ycf1.fst.pin new file mode 100644 index 0000000..1ff1bfc Binary files /dev/null and b/detectors/cds/test/test.db/shell/ycf1.fst.pin differ diff --git a/detectors/cds/test/test.db/shell/ycf1.fst.psq b/detectors/cds/test/test.db/shell/ycf1.fst.psq new file mode 100644 index 0000000..24a3bc6 Binary files /dev/null and b/detectors/cds/test/test.db/shell/ycf1.fst.psq differ diff --git a/detectors/cds/test/test.db/core/ycf2.fst b/detectors/cds/test/test.db/shell/ycf2.fst similarity index 100% rename from detectors/cds/test/test.db/core/ycf2.fst rename to detectors/cds/test/test.db/shell/ycf2.fst diff --git a/detectors/cds/test/test.db/shell/ycf2.fst.phr b/detectors/cds/test/test.db/shell/ycf2.fst.phr new file mode 100644 index 0000000..7a9b779 Binary files /dev/null and b/detectors/cds/test/test.db/shell/ycf2.fst.phr differ diff --git a/detectors/cds/test/test.db/shell/ycf2.fst.pin b/detectors/cds/test/test.db/shell/ycf2.fst.pin new file mode 100644 index 0000000..5949535 Binary files /dev/null and b/detectors/cds/test/test.db/shell/ycf2.fst.pin differ diff --git a/detectors/cds/test/test.db/shell/ycf2.fst.psq b/detectors/cds/test/test.db/shell/ycf2.fst.psq new file mode 100644 index 0000000..9dcb08d Binary files /dev/null and b/detectors/cds/test/test.db/shell/ycf2.fst.psq differ diff --git a/detectors/cds/test/test.ref b/detectors/cds/test/test.ref index ba758bd..5466e04 100644 --- a/detectors/cds/test/test.ref +++ b/detectors/cds/test/test.ref @@ -278,7 +278,7 @@ FT /gene="ycf1" FT /locus_tag="" FT /product="hypothetical chloroplast RF1" FT /inference="similar to DNA sequence:AC_000188:LyesCp019" -FT /inference="detect pass:pass1:core" +FT /inference="detect pass:pass1:shell" FT /translation="MIFQSFLLGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLL FT RALVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFW FT NNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYLFRCNNK @@ -322,7 +322,7 @@ FT /gene="ycf2" FT /locus_tag="" FT /product="Ycf2" FT /inference="similar to DNA sequence:AC_000188:LyesCp004" -FT /inference="detect pass:pass1:core" +FT /inference="detect pass:pass1:shell" FT /translation="MRGHQFKSWIFELREILREIKNSHHFLDSWTQFNSVGSFIHIFFH FT QERFLKLFDPRIWSILLSRNSQGSPSNRYFTIKGVILFVVAVLIYRINNRNMVERKNLY FT LIGLLPIPMNSIGPRNDTLEESVGSSNINRLIVSLLYLPKGKKISESCFLNPKESTWVL