diff --git a/src/ITSx/ITSx_1.0.11.tgz b/src/ITSx/ITSx_1.0.11.tgz new file mode 100644 index 0000000..f71972b Binary files /dev/null and b/src/ITSx/ITSx_1.0.11.tgz differ diff --git a/src/ITSx/Makefile b/src/ITSx/Makefile new file mode 100644 index 0000000..4edf918 --- /dev/null +++ b/src/ITSx/Makefile @@ -0,0 +1,60 @@ +# --------------------------------------------------------------- +# $Id: $ +# --------------------------------------------------------------- +# @file: Makefile +# @desc: makefile for package exonerate +# +# @history: +# @+ : Sept 15 : Adapted to ORG.Annot +# +# @note: should be processed with gnu compatible make +# @note: helixware_compatible +# +# @end: +# --------------------------------------------------------------- +# + +include ../../config/auto.conf + +PKG = ITSx_1.0.11 +PKGTAR ?= $(PKG).tgz + +PKGDIR ?= build.$(PORTNAME) + +PRTPATH = $(abspath $(PRTDIR)) +DATADIR = $(CFGDIR)../data +DATAITS = $(DATADIR)/its + +# +# Rules +# + +.PHONY: all clean test portclean pkg pkg.expand pkg.install + +all:: pkg + +pkg.expand:: + test -d $(PKGDIR) || mkdir $(PKGDIR) + $(TAR) zxf $(PKGTAR) -C $(PKGDIR) --strip-components 1 + +pkg.install:: pkg.expand + @mkdir -p $(BINDIR) + @cp $(PKGDIR)/ITSx $(BINDIR) + @mkdir -p $(DATAITS) + @cp -r $(PKGDIR)/ITSx_db $(DATAITS) + @echo "+++++++++++ package $(PKG) done" + +pkg:: pkg.install + +test:: + echo No test available + +clean:: + echo Done + +portclean:: + (! test -d $(PKGDIR)) || \rm -r $(PKGDIR) + + +include $(CFGDIR)targets/help.targ + diff --git a/src/Makefile b/src/Makefile index de5b6fb..b7f9094 100755 --- a/src/Makefile +++ b/src/Makefile @@ -32,7 +32,8 @@ DIRS = aragorn \ gawk \ getopt \ cd-hit \ - tcsh + tcsh \ + ITSx include ../config/targets/propagate.targ diff --git a/src/cd-hit/.gitignore b/src/cd-hit/.gitignore new file mode 100644 index 0000000..3f0916a --- /dev/null +++ b/src/cd-hit/.gitignore @@ -0,0 +1 @@ +/build.i386-darwin/ diff --git a/src/getopt/.gitignore b/src/getopt/.gitignore new file mode 100644 index 0000000..3f0916a --- /dev/null +++ b/src/getopt/.gitignore @@ -0,0 +1 @@ +/build.i386-darwin/