From 8b27f23a8ef7cfe5581a8a994c77f1c11041df9e Mon Sep 17 00:00:00 2001
From: Eric Coissac <eric.coissac@metabarcoding.org>
Date: Mon, 9 Nov 2015 14:01:21 +0100
Subject: [PATCH] change the call to awk

Former-commit-id: fa0b02e712db163ba6d37407cea46d1d413a7cb5
Former-commit-id: f393558b7962188159ac123d654ae14ee581f5f8
---
 detectors/trna/bin/go_trna.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/detectors/trna/bin/go_trna.sh b/detectors/trna/bin/go_trna.sh
index 0647825..66964d0 100755
--- a/detectors/trna/bin/go_trna.sh
+++ b/detectors/trna/bin/go_trna.sh
@@ -33,7 +33,7 @@ pushTmpDir ORG.trna
 	TRNA=$(basename ${QUERY})
 	
 	aragorn -i -w -seq ${QUERY} | \
-		${CmdAwk} -f ${PROG_DIR}/../lib/aragorn_wrapper.awk
+		${AwkCmd} -f ${PROG_DIR}/../lib/aragorn_wrapper.awk
 	
 
 popTmpDir