diff --git a/org-annotate.sh b/org-annotate.sh index ffdcebe..f60f098 100755 --- a/org-annotate.sh +++ b/org-annotate.sh @@ -435,10 +435,11 @@ pushTmpDir ORG.organnot echo "XX" echo "PR Project:${project};" echo "XX" + echo "DE XXX" + else + split80 "${organism} ${defline}." "DE " fi - split80 "${organism} ${defline}." "DE " - echo "DE " echo "XX" loginfo "Done." @@ -482,9 +483,9 @@ pushTmpDir ORG.organnot loginfo "Done." loginfo "Ordering annotations..." - $AwkCmd '(entry && /^.....(misc|repeat|rRNA|tRNA|gene|source)/) { \ + $AwkCmd '(entry && /^.....(misc|repeat|rRNA|tRNA|CDS|source)/) { \ print pos,entry } \ - /^.....(misc|repeat|rRNA|tRNA|gene|source)/ { \ + /^.....(misc|repeat|rRNA|tRNA|CDS|source)/ { \ match($3,"[0-9][0-9]*"); \ pos=substr($3,RSTART,RLENGTH)*1000 + 1; \ entry=$0; \