From 9648bbb874d0032e0fb9603cb800ccc3a53e91f7 Mon Sep 17 00:00:00 2001 From: Eric Coissac Date: Fri, 5 Nov 2021 09:30:55 +0100 Subject: [PATCH] Makes modification on the sequence header and feature source Former-commit-id: 10e921644ed414771a4d5c5017425c53b83e31c7 Former-commit-id: 5b05b011222f74c784f36f99d111e74b5402ccdd --- org-annotate.sh | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/org-annotate.sh b/org-annotate.sh index ffdcebe..f60f098 100755 --- a/org-annotate.sh +++ b/org-annotate.sh @@ -435,10 +435,11 @@ pushTmpDir ORG.organnot echo "XX" echo "PR Project:${project};" echo "XX" + echo "DE XXX" + else + split80 "${organism} ${defline}." "DE " fi - split80 "${organism} ${defline}." "DE " - echo "DE " echo "XX" loginfo "Done." @@ -482,9 +483,9 @@ pushTmpDir ORG.organnot loginfo "Done." loginfo "Ordering annotations..." - $AwkCmd '(entry && /^.....(misc|repeat|rRNA|tRNA|gene|source)/) { \ + $AwkCmd '(entry && /^.....(misc|repeat|rRNA|tRNA|CDS|source)/) { \ print pos,entry } \ - /^.....(misc|repeat|rRNA|tRNA|gene|source)/ { \ + /^.....(misc|repeat|rRNA|tRNA|CDS|source)/ { \ match($3,"[0-9][0-9]*"); \ pos=substr($3,RSTART,RLENGTH)*1000 + 1; \ entry=$0; \