diff --git a/detectors/cds/lib/toEmbl.awk b/detectors/cds/lib/toEmbl.awk index 624f19c..a75b3df 100644 --- a/detectors/cds/lib/toEmbl.awk +++ b/detectors/cds/lib/toEmbl.awk @@ -181,6 +181,10 @@ function Unk(s) { QQualifier("product", Product) QQualifier("inference", "similar to DNA sequence:" Simil) QQualifier("inference", "org.annot -- detect pass:" PassType ":" PassInfo) + if (match(Translat,/\*/)>0) { + QQualifier("pseudogene","unknown") + QQualifier("note","nonfunctional due to stop codon") + } if (FrameShift==0) QQualifier("translation", Translat)