From a4e053989baaa448a3e48cd083c8feafa9619636 Mon Sep 17 00:00:00 2001
From: Eric Coissac <eric.coissac@metabarcoding.org>
Date: Fri, 18 Dec 2015 08:39:48 +0100
Subject: [PATCH] Specify the genetic code during the aragorn call.

Former-commit-id: 6f18008c34dcb33059accc02edef681a26848416
Former-commit-id: a7313f06a23a307a0384b88e3bc8a1d7b9292e07
---
 detectors/trna/bin/go_trna.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/detectors/trna/bin/go_trna.sh b/detectors/trna/bin/go_trna.sh
index 66964d0..abe415a 100755
--- a/detectors/trna/bin/go_trna.sh
+++ b/detectors/trna/bin/go_trna.sh
@@ -32,7 +32,7 @@ pushTmpDir ORG.trna
 
 	TRNA=$(basename ${QUERY})
 	
-	aragorn -i -w -seq ${QUERY} | \
+	aragorn -i -w -seq -gcbact ${QUERY} | \
 		${AwkCmd} -f ${PROG_DIR}/../lib/aragorn_wrapper.awk