From b3b9955140397b66fbb6990fe23e91a42623cf75 Mon Sep 17 00:00:00 2001
From: Eric Coissac <eric.coissac@metabarcoding.org>
Date: Sun, 9 Oct 2016 07:19:00 -0300
Subject: [PATCH] Force source to be the first feature

Former-commit-id: b78cd77b042bf3c7ec4251e5f2e77762b84d5995
Former-commit-id: 1f1ca1afd0359bd8fde039b8be0e80e9472124c7
---
 org-annotate.sh | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/org-annotate.sh b/org-annotate.sh
index 8db8743..d08e4ec 100755
--- a/org-annotate.sh
+++ b/org-annotate.sh
@@ -218,31 +218,31 @@ pushTmpDir ORG.organnot
 			loginfo "Done."
 
 			loginfo "Printing the source feature"
-					echo "FT   source          1..${sl}"                               >> "${RESULTS}.annot"
+					echo "FT   source          1..${sl}"                               
 
 				if [[ "${organism}" != "{organism}" ]] ; then 
-					echo "FT                   /organism=\"${organism}\""              >> "${RESULTS}.annot"
+					echo "FT                   /organism=\"${organism}\""              
 				fi	
 				
 				case "${types}" in 
 					chloro)  
-						echo "FT                   /organelle=\"plastid:chloroplast\"" >> "${RESULTS}.annot"
+						echo "FT                   /organelle=\"plastid:chloroplast\"" 
 					;;
 					mito)    
-						echo "FT                   /organelle=\"mitochondrion\""       >> "${RESULTS}.annot"
+						echo "FT                   /organelle=\"mitochondrion\""       
 					;;
 					*) 
 						loginfo "Nuclear sequence"
 					;;
 				esac
 				
-					echo "FT                   /mol_type=\"genomic DNA\""              >> "${RESULTS}.annot"
+					echo "FT                   /mol_type=\"genomic DNA\""              
 				
 				if [[ "${taxid}" != "no" ]] ; then 
-					echo "FT                   /db_xref=\"taxon:${taxid}\""            >> "${RESULTS}.annot"
+					echo "FT                   /db_xref=\"taxon:${taxid}\""            
 				fi
 				
-				#	echo "FT                   /country=\"Poland: Bialowieza Forest\"" >> "${RESULTS}.annot"
+				#	echo "FT                   /country=\"Poland: Bialowieza Forest\"" 
 			loginfo "Done."
 			
 			loginfo "Ordering annotations..."