From cf99ca56a4f34b8ad3f3753ee23acc2c92c9ebbe Mon Sep 17 00:00:00 2001 From: Eric Coissac Date: Mon, 9 Nov 2015 13:11:54 +0100 Subject: [PATCH] Patches for the cluster luke Former-commit-id: 54cfd925a4cb13d389bd3086164b99bd246319e7 Former-commit-id: d865056147c56bf0c6220e29d7f40e26f140a4ba --- detectors/ir/bin/go_ir.sh | 2 +- detectors/normalize/lib/lookforIR.lib.sh | 2 ++ detectors/trna/bin/go_trna.sh | 2 +- 3 files changed, 4 insertions(+), 2 deletions(-) diff --git a/detectors/ir/bin/go_ir.sh b/detectors/ir/bin/go_ir.sh index e199449..2f7a0bb 100755 --- a/detectors/ir/bin/go_ir.sh +++ b/detectors/ir/bin/go_ir.sh @@ -61,4 +61,4 @@ pushTmpDir ORG.ir popTmpDir -exit 0 \ No newline at end of file +exit 0 diff --git a/detectors/normalize/lib/lookforIR.lib.sh b/detectors/normalize/lib/lookforIR.lib.sh index 1919a21..0070c2d 100644 --- a/detectors/normalize/lib/lookforIR.lib.sh +++ b/detectors/normalize/lib/lookforIR.lib.sh @@ -1,3 +1,5 @@ +#!/bin/bash + source "${THIS_DIR}/../../../scripts/bash_init.sh" SELECTIR="${PROG_DIR}/../../normalize/lib/selectIR.py" diff --git a/detectors/trna/bin/go_trna.sh b/detectors/trna/bin/go_trna.sh index dd6f468..0647825 100755 --- a/detectors/trna/bin/go_trna.sh +++ b/detectors/trna/bin/go_trna.sh @@ -33,7 +33,7 @@ pushTmpDir ORG.trna TRNA=$(basename ${QUERY}) aragorn -i -w -seq ${QUERY} | \ - ${PROG_DIR}/../lib/aragorn_wrapper.awk + ${CmdAwk} -f ${PROG_DIR}/../lib/aragorn_wrapper.awk popTmpDir