From d75cb117d30477f3cdbb9a91caa1556554e3c57a Mon Sep 17 00:00:00 2001
From: Eric Coissac <eric.coissac@metabarcoding.org>
Date: Thu, 17 Feb 2022 18:42:55 +0100
Subject: [PATCH] new script for sumarizing features for easiest compairison

Former-commit-id: 348556d9cd376fc017b6b67859e6268083c942d9
Former-commit-id: 034f32f7b2caec70e604c50dd90786a3df0942e0
---
 summarize_annot.sh | 12 ++++++++++++
 1 file changed, 12 insertions(+)
 create mode 100755 summarize_annot.sh

diff --git a/summarize_annot.sh b/summarize_annot.sh
new file mode 100755
index 0000000..ab8101f
--- /dev/null
+++ b/summarize_annot.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+
+egrep "^FT   (CDS|rRNA|tRNA) |/gene=" $1 \
+  | awk '
+        /\/gene=/ && (gene!=1) {
+            print $0; 
+            gene=1
+            } 
+        /^FT   (CDS|rRNA|tRNA)/ {
+            print $0;
+            gene=0
+            }' 
\ No newline at end of file