From d83201fd2fea2a7f9f36cf36e9b1b9b431a980ae Mon Sep 17 00:00:00 2001
From: alain viari <alain.viari@inria.fr>
Date: Sat, 14 Nov 2015 15:16:16 +0100
Subject: [PATCH] minor bug in chlorodb

Former-commit-id: 7017655ac86e7b7837c7b581bf8a1abb86c08b30
Former-commit-id: dcedd4e32e3c7ce302eed94abd2b975a4506df97
---
 detectors/cds/tools/chlorodb/go_chlorodb.sh | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/detectors/cds/tools/chlorodb/go_chlorodb.sh b/detectors/cds/tools/chlorodb/go_chlorodb.sh
index fafc04a..49e73d3 100755
--- a/detectors/cds/tools/chlorodb/go_chlorodb.sh
+++ b/detectors/cds/tools/chlorodb/go_chlorodb.sh
@@ -36,7 +36,7 @@ cd $DB_BASE/info
 
 if (! -e $DB_BASE/parameters.sh) then
   Notify "no $DB_BASE/parameters.sh found : creating one for you"
-  @ n = `find $DB_BASE/download -depth 1 -type f -print | wc -l`
+  @ n = `find $DB_BASE/download -maxdepth 1 -type f -print | wc -l`
   @ cor_cutoff = $n / 2
   @ atg_cutoff = $n / 10
   @ dbs_cutoff = $n / 4
@@ -85,7 +85,7 @@ source $DB_BASE/parameters.sh
 # temporarily uncompress
 #
 
-set ff = `find $DB_BASE/download -depth 1 -name \*.gz -print`
+set ff = `find $DB_BASE/download -maxdepth 1 -name \*.gz -print`
 
 if ($#ff != 0) then
   Notify "uncompressing $#ff entries"
@@ -98,7 +98,7 @@ endif
 # convert gbk/embl to fasta
 #
 
-set ff = `find $DB_BASE/download -depth 1 \( -name \*.gbk -or -name \*.embl \) -print`
+set ff = `find $DB_BASE/download -maxdepth 1 \( -name \*.gbk -or -name \*.embl \) -print`
 
 Notify "convert $#ff gbk/embl entries to fasta"
 
@@ -241,7 +241,7 @@ endif
 # recompress entries
 #
 
-set ff = `find $DB_BASE/download -depth 1 -type f -print`
+set ff = `find $DB_BASE/download -maxdepth 1 -type f -print`
 
 if ($#ff != 0) then
   Notify "recompressing $#ff entries"
@@ -252,7 +252,7 @@ endif
 
 # compress fasta
 
-set ff = `find $DB_BASE/fasta -depth 1 -name \*.fst -print`
+set ff = `find $DB_BASE/fasta -maxdepth 1 -name \*.fst -print`
 
 if ($#ff != 0) then
   Notify "compressing $#ff fasta entries"