From e4f3081fa814a45b902c01abe81f4268bff139fe Mon Sep 17 00:00:00 2001 From: Eric Coissac Date: Thu, 6 Oct 2016 12:35:32 -0300 Subject: [PATCH] Switch to the speedup mode because of the slow down imposed by the new exonarate parametters Former-commit-id: 30f2caea735460bcc4dfa61adde72d7da2fb6f2e Former-commit-id: 0537c77f5bc16d766b3cbd668dcd1e1711140937 --- detectors/cds/params/default | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/detectors/cds/params/default b/detectors/cds/params/default index 0e7ac2f..f20a9aa 100644 --- a/detectors/cds/params/default +++ b/detectors/cds/params/default @@ -14,12 +14,14 @@ AssignUndef TMP_CLEANUP 1 # # pass1: exonerate speedup # -AssignUndef PASS1_SPEEDUP 0 +AssignUndef PASS1_SPEEDUP 1 AssignUndef PASS1_SLOWDOWN 0 -AssignUndef PASS1_BLASTX_FILTER_IDMIN 70 -AssignUndef PASS1_BLASTX_FILTER_NBMIN 50 -AssignUndef PASS1_BLASTX_FILTER_NBMAX 200 +AssignUndef PASS1_BLASTX_FILTER_IDMIN 80 +AssignUndef PASS1_BLASTX_FILTER_NBMIN 20 +AssignUndef PASS1_BLASTX_FILTER_NBMAX 50 +AssignUndef PASS1_BLASTX_FILTER_COMIN 0.8 +AssignUndef PASS1_BLASTX_FILTER_GCODE 11 # # pass1: exonerate parameters