diff --git a/detectors/trna/lib/aragorn_wrapper.awk b/detectors/trna/lib/aragorn_wrapper.awk index 99fca0b..29fa5cc 100755 --- a/detectors/trna/lib/aragorn_wrapper.awk +++ b/detectors/trna/lib/aragorn_wrapper.awk @@ -65,7 +65,7 @@ function patchtRNA(anticodon,trna,seq) { file=printfasta(trna "_" anticodon,seq,""); command= "sumatra -x -n " file " " trnalib() " 2>> /dev/null"; - while ((command | getline output) > 0) { + while ((command | getline output) > 0) { split(output,field," "); sub("_"," ",field[2]); split(field[2],f2," ");