2015-10-07 12:22:15 [OA INFO ] 90184 -- Selecting Viridiplantae genebank entries... 2015-10-07 12:22:24 [OA INFO ] 90184 -- --> 695 entries selected 2015-10-07 12:22:24 [OA INFO ] 90184 -- Done 2015-10-07 12:22:24 [OA INFO ] 90184 -- Extracting Long Single Copies (LSC)... 2015-10-07 12:23:17 [OA INFO ] 90184 -- --> 64 retreived sequences 2015-10-07 12:23:17 [OA INFO ] 90184 -- Done 2015-10-07 12:23:17 [OA INFO ] 90184 -- Building LSC coorientation graph... 2015-10-07 12:23:17 [OA INFO ] 90306 -- Build temporary blast DB... 2015-10-07 12:23:18 [OA INFO ] 90306 -- Done 2015-10-07 12:23:18 [OA INFO ] 90306 -- Running Blast... 2015-10-07 12:24:29 [OA INFO ] 90306 -- Done 2015-10-07 12:24:29 [OA INFO ] 90184 -- --> 6 connected componants 2015-10-07 12:24:29 [OA INFO ] 90184 -- Done 2015-10-07 12:24:29 [OA INFO ] 90184 -- Indexing LCS... 2015-10-07 12:24:30 [OA INFO ] 90184 -- Done 2015-10-07 12:24:30 [OA INFO ] 90184 -- Extracting main connected components for LCS... 2015-10-07 12:24:30 [OA INFO ] 90184 -- --> 40 sequences 2015-10-07 12:24:30 [OA INFO ] 90184 -- Done 2015-10-07 12:24:30 [OA INFO ] 90184 -- Extracting second connected components for LCS... 2015-10-07 12:24:30 [OA INFO ] 90184 -- --> 5 sequences 2015-10-07 12:24:30 [OA INFO ] 90184 -- Done 2015-10-07 12:24:30 [OA INFO ] 90184 -- merging both connected components for LCS... 2015-10-07 12:24:30 [OA INFO ] 90184 -- --> 45 sequences in total 2015-10-07 12:24:30 [OA INFO ] 90184 -- Done 2015-10-07 12:24:30 [OA INFO ] 90184 -- Checking LCS homogeneity... 2015-10-07 12:24:30 [OA INFO ] 90439 -- Build temporary blast DB... 2015-10-07 12:24:30 [OA INFO ] 90439 -- Done 2015-10-07 12:24:30 [OA INFO ] 90439 -- Running Blast... 2015-10-07 12:25:35 [OA INFO ] 90439 -- Done 2015-10-07 12:25:35 [OA INFO ] 90184 -- --> 1 connected componants 2015-10-07 12:25:35 [OA INFO ] 90184 -- Done 2015-10-07 12:25:35 [OA INFO ] 90184 -- Installing LCS reference databases... 2015-10-07 12:25:35 [OA INFO ] 90184 -- Done 2015-10-07 12:25:35 [OA INFO ] 90184 -- Extracting Short Single Copies (SSC)... 2015-10-07 12:26:28 [OA INFO ] 90184 -- --> 76 retreived sequences 2015-10-07 12:26:28 [OA INFO ] 90184 -- Done 2015-10-07 12:26:28 [OA INFO ] 90184 -- Building SSC coorientation graph... 2015-10-07 12:26:28 [OA INFO ] 90517 -- Build temporary blast DB... 2015-10-07 12:26:28 [OA INFO ] 90517 -- Done 2015-10-07 12:26:28 [OA INFO ] 90517 -- Running Blast... 2015-10-07 12:26:49 [OA INFO ] 90517 -- Done 2015-10-07 12:26:49 [OA INFO ] 90184 -- --> 1 connected componants 2015-10-07 12:26:49 [OA INFO ] 90184 -- Done 2015-10-07 12:26:49 [OA INFO ] 90184 -- Indexing SSC... 2015-10-07 12:26:49 [OA INFO ] 90184 -- Done 2015-10-07 12:26:49 [OA INFO ] 90184 -- Extracting main connected components for SSC... 2015-10-07 12:26:49 [OA INFO ] 90184 -- --> 72 sequences 2015-10-07 12:26:49 [OA INFO ] 90184 -- Done 2015-10-07 12:26:49 [OA INFO ] 90184 -- Extracting second connected components for SSC... 2015-10-07 12:26:49 [OA INFO ] 90184 -- --> 0 sequences 2015-10-07 12:26:49 [OA INFO ] 90184 -- Done 2015-10-07 12:26:49 [OA INFO ] 90184 -- merging both connected components for SSC... 2015-10-07 12:26:49 [OA INFO ] 90184 -- --> 72 sequences in total 2015-10-07 12:26:49 [OA INFO ] 90184 -- Done 2015-10-07 12:26:49 [OA INFO ] 90184 -- Checking SSC homogeneity... 2015-10-07 12:26:49 [OA INFO ] 90675 -- Build temporary blast DB... 2015-10-07 12:26:49 [OA INFO ] 90675 -- Done 2015-10-07 12:26:49 [OA INFO ] 90675 -- Running Blast... 2015-10-07 12:27:10 [OA INFO ] 90675 -- Done 2015-10-07 12:27:10 [OA INFO ] 90184 -- --> 1 connected componants 2015-10-07 12:27:10 [OA INFO ] 90184 -- Done 2015-10-07 12:27:10 [OA INFO ] 90184 -- Installing SSC reference databases... 2015-10-07 12:27:10 [OA INFO ] 90184 -- Done 2015-10-07 12:27:10 [OA INFO ] 90184 -- Installing blast version of the SC_RefDB reference databases... 2015-10-07 12:27:10 [OA INFO ] 90184 -- Done