From 420cdb877b6a5512f4cc0fa4b0430210dbae52c4 Mon Sep 17 00:00:00 2001 From: Eric Coissac Date: Tue, 27 Mar 2007 16:33:50 +0000 Subject: [PATCH] add a -k option to the ecoPCR binary to substitute superkingdom column by a kingdom column git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@12 60f365c0-8329-0410-b2a4-ec073aeeaa1d --- src/ecopcr.c | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/src/ecopcr.c b/src/ecopcr.c index decdb48..20a9bce 100644 --- a/src/ecopcr.c +++ b/src/ecopcr.c @@ -413,6 +413,7 @@ int main(int argc, char **argv) printf("# direct strand oligo1 : %-32s ; oligo2c : %32s\n", o1->cpat,o2c->cpat); printf("# reverse strand oligo2 : %-32s ; oligo1c : %32s\n", o2->cpat,o1c->cpat); printf("# max error count by oligonucleotide : %d\n",error_max); + printf("# database : %s\n",prefix); if (lmin && lmax) printf("# amplifiat length between [%d,%d] bp\n",lmin,lmax); @@ -420,6 +421,10 @@ int main(int argc, char **argv) printf("# amplifiat length larger than %d bp\n",lmin); else if (lmax) printf("# amplifiat length smaller than %d bp\n",lmax); + if (kingdom_mode) + printf("# output in kingdom mode\n"); + else + printf("# output in superkingdom mode\n"); printf("#\n"); taxonomy = read_taxonomy(prefix);