From 4fd532e05c57a712150b102da9348798b16012f7 Mon Sep 17 00:00:00 2001
From: Eric Coissac <eric.coissac@metabarcoding.org>
Date: Mon, 4 Jun 2007 15:33:30 +0000
Subject: [PATCH] git-svn-id:
 https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@25
 60f365c0-8329-0410-b2a4-ec073aeeaa1d

---
 src/Makefile | 91 ++++++++++++++++++++++++++++++++++++++++++++--------
 1 file changed, 77 insertions(+), 14 deletions(-)

diff --git a/src/Makefile b/src/Makefile
index bec8fce..60baeb5 100644
--- a/src/Makefile
+++ b/src/Makefile
@@ -1,21 +1,84 @@
+EXEC=ecoPCR ecofind ecoisundertaxon
 
-CC=gcc
-CFLAGS=-g
-EXEC=ecoPCR
-SRC= ecoPCR.c
-OBJ= $(SRC:.c=.o)
-LIBPATH= -L libapat/ libecoPCR/
-LIB= -lapat -lecoPCR
+PCR_SRC= ecopcr.c
+PCR_OBJ= $(patsubst %.c,%.o,$(PCR_SRC))
 
-MACHINE=MAC_OS_X
+FIND_SRC= ecofind.c
+FIND_OBJ= $(patsubst %.c,%.o,$(FIND_SRC))
 
-all: ecoPCR
+IUT_SRC= ecoisundertaxon.c
+IUT_OBJ= $(patsubst %.c,%.o,$(IUT_SRC))
 
-ecoPCR: ecoPCR.o
-	gcc -o ecoPCR ecoPCR.o -Llibapat/ -LlibecoPCR/ -lapat -lecoPCR
+SRCS= $(PCR_SRC) $(FIND_SRC) $(IUT_SRC)
+
+LIB= -lecoPCR -lapat -lz -lm
+
+LIBFILE= libapat/libapat.a \
+         libecoPCR/libecoPCR.a
+
+
+include global.mk
+
+all: $(EXEC)
+
+
+########
+#
+# ecoPCR compilation
+#
+########
+
+# executable compilation and link
+
+ecoPCR: $(PCR_OBJ) $(LIBFILE) 
+	$(CC) $(LDFLAGS) -o $@ $< $(LIBPATH) $(LIB)
 	
-ecoPCR.o: ecoPCR.c
-	gcc -D$(MACHINE) -o ecoPCR.o -c ecoPCR.c -g
+########
+#
+# ecofind compilation
+#
+########
 	
+# executable compilation and link
+
+ecofind: $(FIND_OBJ) $(LIBFILE)
+	$(CC) $(LDFLAGS) -o $@ $< $(LIBPATH) $(LIB)
+	
+########
+#
+# IsUnderTaxon compilation
+#
+########
+	
+# executable compilation and link
+
+ecoisundertaxon: $(IUT_OBJ) $(LIBFILE)
+	$(CC) $(LDFLAGS) -o $@ $< $(LIBPATH) $(LIB)
+
+########
+#
+# library compilation
+#
+########
+
+libapat/libapat.a:
+	$(MAKE) -C libapat
+	
+libecoPCR/libecoPCR.a:
+	$(MAKE) -C libecoPCR
+	
+	
+########
+#
+# project management
+#
+########
+
 clean:
-	rm -f *.o
\ No newline at end of file
+	rm -f *.o	
+	rm -f $(EXEC)
+	$(MAKE) -C libapat clean
+	$(MAKE) -C libecoPCR clean
+		
+
+		
\ No newline at end of file