diff --git a/src/Makefile b/src/Makefile index 9b213b0..a8011c7 100644 --- a/src/Makefile +++ b/src/Makefile @@ -6,7 +6,7 @@ PRIMER_OBJ= $(patsubst %.c,%.o,$(PRIMER_SRC)) SRCS= $(PRIMER_SRC) -LIB= -lecoPCR -lecoprimer -lz -lm +LIB= -lecoprimer -lecoPCR -lz -lm LIBFILE= libecoPCR/libecoPCR.a \ libecoprimer/libecoprimer.a @@ -26,7 +26,7 @@ all: $(EXEC) # executable compilation and link ecoPrimer: $(PRIMER_OBJ) $(LIBFILE) - $(CC) $(LDFLAGS) -O5 -m64 -fast -o $@ $< $(LIBPATH) $(LIB) + $(CC) $(LDFLAGS) -O5 -m64 -o $@ $< $(LIBPATH) $(LIB) ######## @@ -55,4 +55,4 @@ clean: $(MAKE) -C libecoprimer clean - \ No newline at end of file + diff --git a/src/global.mk b/src/global.mk index 94cf61d..85b8672 100644 --- a/src/global.mk +++ b/src/global.mk @@ -3,7 +3,7 @@ LIBPATH= -Llibapat -LlibecoPCR -Llibecoprimer MAKEDEPEND = gcc -D$(MACHINE) -M $(CPPFLAGS) -o $*.d $< CC=gcc -CFLAGS= -W -Wall -O5 -m64 -fast -g +CFLAGS= -W -Wall -O5 -m64 #CFLAGS= -W -Wall -O0 -m64 -g #CFLAGS= -W -Wall -O5 -fast -g @@ -17,4 +17,4 @@ default: all @sed 's/\($*\)\.o[ :]*/\1.o $@ : /g' < $*.d > $@; \ rm -f $*.d; [ -s $@ ] || rm -f $@ -include $(SRCS:.c=.P) \ No newline at end of file +include $(SRCS:.c=.P) diff --git a/src/libecoPCR/ecofilter.c b/src/libecoPCR/ecofilter.c index 8a7dbb1..8c737c6 100644 --- a/src/libecoPCR/ecofilter.c +++ b/src/libecoPCR/ecofilter.c @@ -16,4 +16,5 @@ int eco_is_taxid_included( ecotaxonomy_t *taxonomy, return 1; return 0; -} \ No newline at end of file +} + diff --git a/src/libecoprimer/aproxpattern.c b/src/libecoprimer/aproxpattern.c index 2dc13bf..170f00e 100644 --- a/src/libecoprimer/aproxpattern.c +++ b/src/libecoprimer/aproxpattern.c @@ -39,8 +39,8 @@ ppattern_t buildPatternFromWord(word_t word, uint32_t patlen) } -#ifdef IS_UPPER(c) -#undef IS_UPPER(c) +#ifdef IS_UPPER +#undef IS_UPPER #endif /* -------------------------------------------- */