From 9e6b924c924ae10a4a41dd3c7171844c76be6038 Mon Sep 17 00:00:00 2001 From: Eric Coissac Date: Mon, 19 Oct 2009 17:27:51 +0000 Subject: [PATCH] Add a new option -E to considere some example sequences as counterexamples git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@236 60f365c0-8329-0410-b2a4-ec073aeeaa1d --- src/ecoprimer.c | 1 + 1 file changed, 1 insertion(+) diff --git a/src/ecoprimer.c b/src/ecoprimer.c index 4f1724d..deb6127 100644 --- a/src/ecoprimer.c +++ b/src/ecoprimer.c @@ -57,6 +57,7 @@ static void PrintHelp() PP "-l : minimum [L]ength : define the minimum amplication length. \n\n"); PP "-L : maximum [L]ength : define the maximum amplicationlength. \n\n"); PP "-r : [R]estricts the search to the given taxonomic id (restrict the example taxon set).\n\n"); + PP "-E : [E]xception taxid allows to indicate than some subclade of example sequences are conterexamples.\n\n"); PP "-c : Consider that the database sequences are [c]ircular\n\n"); PP "-3 : Three prime strict match\n\n"); PP "-q : Strict matching [q]uorum, percentage of the sequences in which strict primers are found. By default it is 70\n\n");