From b5b0ca7e9d2b48c9983724fa2d0e5eda09d02503 Mon Sep 17 00:00:00 2001 From: Eric Coissac Date: Wed, 4 Mar 2009 22:35:06 +0000 Subject: [PATCH] git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@181 60f365c0-8329-0410-b2a4-ec073aeeaa1d --- src/libecoPCR/ecoError.P | 15 -------------- src/libecoPCR/ecoIOUtils.P | 15 -------------- src/libecoPCR/ecoMalloc.P | 15 -------------- src/libecoPCR/ecodna.P | 5 ----- src/libecoPCR/ecofilter.P | 5 ----- src/libecoPCR/econame.P | 15 -------------- src/libecoPCR/ecorank.P | 15 -------------- src/libecoPCR/ecoseq.P | 19 ------------------ src/libecoPCR/ecotax.P | 15 -------------- src/libecoprimer/Makefile | 34 -------------------------------- src/libecoprimer/apat_search.P | 17 ---------------- src/libecoprimer/aproxpattern.P | 17 ---------------- src/libecoprimer/goodtaxon.P | 17 ---------------- src/libecoprimer/hashsequence.P | 17 ---------------- src/libecoprimer/libstki.P | 17 ---------------- src/libecoprimer/merge.P | 17 ---------------- src/libecoprimer/pairs.P | 17 ---------------- src/libecoprimer/queue.P | 17 ---------------- src/libecoprimer/readdnadb.P | 17 ---------------- src/libecoprimer/smothsort.P | 10 ---------- src/libecoprimer/sortmatch.P | 17 ---------------- src/libecoprimer/sortword.P | 17 ---------------- src/libecoprimer/strictprimers.P | 18 ----------------- 23 files changed, 368 deletions(-) delete mode 100644 src/libecoPCR/ecoError.P delete mode 100644 src/libecoPCR/ecoIOUtils.P delete mode 100644 src/libecoPCR/ecoMalloc.P delete mode 100644 src/libecoPCR/ecodna.P delete mode 100644 src/libecoPCR/ecofilter.P delete mode 100644 src/libecoPCR/econame.P delete mode 100644 src/libecoPCR/ecorank.P delete mode 100644 src/libecoPCR/ecoseq.P delete mode 100644 src/libecoPCR/ecotax.P delete mode 100644 src/libecoprimer/Makefile delete mode 100644 src/libecoprimer/apat_search.P delete mode 100644 src/libecoprimer/aproxpattern.P delete mode 100644 src/libecoprimer/goodtaxon.P delete mode 100644 src/libecoprimer/hashsequence.P delete mode 100644 src/libecoprimer/libstki.P delete mode 100644 src/libecoprimer/merge.P delete mode 100644 src/libecoprimer/pairs.P delete mode 100644 src/libecoprimer/queue.P delete mode 100644 src/libecoprimer/readdnadb.P delete mode 100644 src/libecoprimer/smothsort.P delete mode 100644 src/libecoprimer/sortmatch.P delete mode 100644 src/libecoprimer/sortword.P delete mode 100644 src/libecoprimer/strictprimers.P diff --git a/src/libecoPCR/ecoError.P b/src/libecoPCR/ecoError.P deleted file mode 100644 index 7c7ae71..0000000 --- a/src/libecoPCR/ecoError.P +++ /dev/null @@ -1,15 +0,0 @@ -ecoError.o ecoError.P : ecoError.c ecoPCR.h /usr/include/stdio.h \ - /usr/include/_types.h /usr/include/sys/_types.h \ - /usr/include/sys/cdefs.h /usr/include/machine/_types.h \ - /usr/include/i386/_types.h /usr/include/inttypes.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/stdlib.h /usr/include/available.h /usr/include/sys/wait.h \ - /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/signal.h /usr/include/i386/signal.h \ - /usr/include/i386/_structs.h /usr/include/sys/_structs.h \ - /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \ - /usr/include/sys/resource.h /usr/include/machine/endian.h \ - /usr/include/i386/endian.h /usr/include/sys/_endian.h \ - /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h diff --git a/src/libecoPCR/ecoIOUtils.P b/src/libecoPCR/ecoIOUtils.P deleted file mode 100644 index fc34a70..0000000 --- a/src/libecoPCR/ecoIOUtils.P +++ /dev/null @@ -1,15 +0,0 @@ -ecoIOUtils.o ecoIOUtils.P : ecoIOUtils.c ecoPCR.h /usr/include/stdio.h \ - /usr/include/_types.h /usr/include/sys/_types.h \ - /usr/include/sys/cdefs.h /usr/include/machine/_types.h \ - /usr/include/i386/_types.h /usr/include/inttypes.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/stdlib.h /usr/include/available.h /usr/include/sys/wait.h \ - /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/signal.h /usr/include/i386/signal.h \ - /usr/include/i386/_structs.h /usr/include/sys/_structs.h \ - /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \ - /usr/include/sys/resource.h /usr/include/machine/endian.h \ - /usr/include/i386/endian.h /usr/include/sys/_endian.h \ - /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h diff --git a/src/libecoPCR/ecoMalloc.P b/src/libecoPCR/ecoMalloc.P deleted file mode 100644 index ea3767b..0000000 --- a/src/libecoPCR/ecoMalloc.P +++ /dev/null @@ -1,15 +0,0 @@ -ecoMalloc.o ecoMalloc.P : ecoMalloc.c ecoPCR.h /usr/include/stdio.h \ - /usr/include/_types.h /usr/include/sys/_types.h \ - /usr/include/sys/cdefs.h /usr/include/machine/_types.h \ - /usr/include/i386/_types.h /usr/include/inttypes.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/stdlib.h /usr/include/available.h /usr/include/sys/wait.h \ - /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/signal.h /usr/include/i386/signal.h \ - /usr/include/i386/_structs.h /usr/include/sys/_structs.h \ - /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \ - /usr/include/sys/resource.h /usr/include/machine/endian.h \ - /usr/include/i386/endian.h /usr/include/sys/_endian.h \ - /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h diff --git a/src/libecoPCR/ecodna.P b/src/libecoPCR/ecodna.P deleted file mode 100644 index b9a71b9..0000000 --- a/src/libecoPCR/ecodna.P +++ /dev/null @@ -1,5 +0,0 @@ -ecodna.o ecodna.P : ecodna.c /usr/include/string.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/sys/cdefs.h \ - /usr/include/machine/_types.h /usr/include/i386/_types.h ecoPCR.h \ - /usr/include/stdio.h /usr/include/inttypes.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h diff --git a/src/libecoPCR/ecofilter.P b/src/libecoPCR/ecofilter.P deleted file mode 100644 index d46d3e0..0000000 --- a/src/libecoPCR/ecofilter.P +++ /dev/null @@ -1,5 +0,0 @@ -ecofilter.o ecofilter.P : ecofilter.c ecoPCR.h /usr/include/stdio.h \ - /usr/include/_types.h /usr/include/sys/_types.h \ - /usr/include/sys/cdefs.h /usr/include/machine/_types.h \ - /usr/include/i386/_types.h /usr/include/inttypes.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h diff --git a/src/libecoPCR/econame.P b/src/libecoPCR/econame.P deleted file mode 100644 index 4c9946c..0000000 --- a/src/libecoPCR/econame.P +++ /dev/null @@ -1,15 +0,0 @@ -econame.o econame.P : econame.c ecoPCR.h /usr/include/stdio.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/sys/cdefs.h \ - /usr/include/machine/_types.h /usr/include/i386/_types.h \ - /usr/include/inttypes.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/string.h /usr/include/stdlib.h /usr/include/available.h \ - /usr/include/sys/wait.h /usr/include/sys/signal.h \ - /usr/include/sys/appleapiopts.h /usr/include/machine/signal.h \ - /usr/include/i386/signal.h /usr/include/i386/_structs.h \ - /usr/include/sys/_structs.h /usr/include/machine/_structs.h \ - /usr/include/mach/i386/_structs.h /usr/include/sys/resource.h \ - /usr/include/machine/endian.h /usr/include/i386/endian.h \ - /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h diff --git a/src/libecoPCR/ecorank.P b/src/libecoPCR/ecorank.P deleted file mode 100644 index 75e09b9..0000000 --- a/src/libecoPCR/ecorank.P +++ /dev/null @@ -1,15 +0,0 @@ -ecorank.o ecorank.P : ecorank.c ecoPCR.h /usr/include/stdio.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/sys/cdefs.h \ - /usr/include/machine/_types.h /usr/include/i386/_types.h \ - /usr/include/inttypes.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/string.h /usr/include/stdlib.h /usr/include/available.h \ - /usr/include/sys/wait.h /usr/include/sys/signal.h \ - /usr/include/sys/appleapiopts.h /usr/include/machine/signal.h \ - /usr/include/i386/signal.h /usr/include/i386/_structs.h \ - /usr/include/sys/_structs.h /usr/include/machine/_structs.h \ - /usr/include/mach/i386/_structs.h /usr/include/sys/resource.h \ - /usr/include/machine/endian.h /usr/include/i386/endian.h \ - /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h diff --git a/src/libecoPCR/ecoseq.P b/src/libecoPCR/ecoseq.P deleted file mode 100644 index 6222690..0000000 --- a/src/libecoPCR/ecoseq.P +++ /dev/null @@ -1,19 +0,0 @@ -ecoseq.o ecoseq.P : ecoseq.c ecoPCR.h /usr/include/stdio.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/sys/cdefs.h \ - /usr/include/machine/_types.h /usr/include/i386/_types.h \ - /usr/include/inttypes.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/stdlib.h /usr/include/available.h /usr/include/sys/wait.h \ - /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/signal.h /usr/include/i386/signal.h \ - /usr/include/i386/_structs.h /usr/include/sys/_structs.h \ - /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \ - /usr/include/sys/resource.h /usr/include/machine/endian.h \ - /usr/include/i386/endian.h /usr/include/sys/_endian.h \ - /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h \ - /usr/include/string.h /usr/include/zlib.h /usr/include/zconf.h \ - /usr/include/sys/types.h /usr/include/unistd.h \ - /usr/include/sys/unistd.h /usr/include/sys/select.h \ - /usr/include/sys/_select.h diff --git a/src/libecoPCR/ecotax.P b/src/libecoPCR/ecotax.P deleted file mode 100644 index 489fc97..0000000 --- a/src/libecoPCR/ecotax.P +++ /dev/null @@ -1,15 +0,0 @@ -ecotax.o ecotax.P : ecotax.c ecoPCR.h /usr/include/stdio.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/sys/cdefs.h \ - /usr/include/machine/_types.h /usr/include/i386/_types.h \ - /usr/include/inttypes.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/string.h /usr/include/stdlib.h /usr/include/available.h \ - /usr/include/sys/wait.h /usr/include/sys/signal.h \ - /usr/include/sys/appleapiopts.h /usr/include/machine/signal.h \ - /usr/include/i386/signal.h /usr/include/i386/_structs.h \ - /usr/include/sys/_structs.h /usr/include/machine/_structs.h \ - /usr/include/mach/i386/_structs.h /usr/include/sys/resource.h \ - /usr/include/machine/endian.h /usr/include/i386/endian.h \ - /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h diff --git a/src/libecoprimer/Makefile b/src/libecoprimer/Makefile deleted file mode 100644 index d68202b..0000000 --- a/src/libecoprimer/Makefile +++ /dev/null @@ -1,34 +0,0 @@ - -SOURCES = goodtaxon.c \ - readdnadb.c \ - smothsort.c \ - sortword.c \ - hashsequence.c \ - strictprimers.c \ - aproxpattern.c \ - merge.c \ - queue.c \ - libstki.c \ - sortmatch.c \ - pairs.c \ - apat_search.c - -SRCS=$(SOURCES) - -OBJECTS= $(patsubst %.c,%.o,$(SOURCES)) - -LIBFILE= libecoprimer.a -RANLIB= ranlib - - -include ../global.mk - - -all: $(LIBFILE) - -clean: - rm -rf $(OBJECTS) $(LIBFILE) - -$(LIBFILE): $(OBJECTS) - ar -cr $@ $? - $(RANLIB) $@ diff --git a/src/libecoprimer/apat_search.P b/src/libecoprimer/apat_search.P deleted file mode 100644 index bfc181f..0000000 --- a/src/libecoprimer/apat_search.P +++ /dev/null @@ -1,17 +0,0 @@ -apat_search.o apat_search.P : apat_search.c /usr/include/stdio.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/sys/cdefs.h \ - /usr/include/machine/_types.h /usr/include/i386/_types.h \ - /usr/include/stdlib.h /usr/include/available.h /usr/include/sys/wait.h \ - /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/signal.h /usr/include/i386/signal.h \ - /usr/include/i386/_structs.h /usr/include/sys/_structs.h \ - /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \ - /usr/include/sys/resource.h /usr/include/machine/endian.h \ - /usr/include/i386/endian.h /usr/include/sys/_endian.h \ - /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h \ - /usr/include/string.h libstki.h ecotype.h apat.h \ - /usr/include/inttypes.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - ../libecoPCR/ecoPCR.h diff --git a/src/libecoprimer/aproxpattern.P b/src/libecoprimer/aproxpattern.P deleted file mode 100644 index 1b3ebf8..0000000 --- a/src/libecoprimer/aproxpattern.P +++ /dev/null @@ -1,17 +0,0 @@ -aproxpattern.o aproxpattern.P : aproxpattern.c ecoprimer.h /usr/include/inttypes.h \ - /usr/include/sys/cdefs.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/machine/_types.h \ - /usr/include/i386/_types.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/stdlib.h /usr/include/available.h /usr/include/sys/wait.h \ - /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/signal.h /usr/include/i386/signal.h \ - /usr/include/i386/_structs.h /usr/include/sys/_structs.h \ - /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \ - /usr/include/sys/resource.h /usr/include/machine/endian.h \ - /usr/include/i386/endian.h /usr/include/sys/_endian.h \ - /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h \ - /usr/include/stdio.h ecotype.h ../libecoPCR/ecoPCR.h apat.h libstki.h \ - debug.h /usr/include/math.h /usr/include/architecture/i386/math.h diff --git a/src/libecoprimer/goodtaxon.P b/src/libecoprimer/goodtaxon.P deleted file mode 100644 index a990580..0000000 --- a/src/libecoprimer/goodtaxon.P +++ /dev/null @@ -1,17 +0,0 @@ -goodtaxon.o goodtaxon.P : goodtaxon.c ecoprimer.h /usr/include/inttypes.h \ - /usr/include/sys/cdefs.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/machine/_types.h \ - /usr/include/i386/_types.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/stdlib.h /usr/include/available.h /usr/include/sys/wait.h \ - /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/signal.h /usr/include/i386/signal.h \ - /usr/include/i386/_structs.h /usr/include/sys/_structs.h \ - /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \ - /usr/include/sys/resource.h /usr/include/machine/endian.h \ - /usr/include/i386/endian.h /usr/include/sys/_endian.h \ - /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h \ - /usr/include/stdio.h ecotype.h ../libecoPCR/ecoPCR.h apat.h libstki.h \ - debug.h diff --git a/src/libecoprimer/hashsequence.P b/src/libecoprimer/hashsequence.P deleted file mode 100644 index d4be603..0000000 --- a/src/libecoprimer/hashsequence.P +++ /dev/null @@ -1,17 +0,0 @@ -hashsequence.o hashsequence.P : hashsequence.c ecoprimer.h /usr/include/inttypes.h \ - /usr/include/sys/cdefs.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/machine/_types.h \ - /usr/include/i386/_types.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/stdlib.h /usr/include/available.h /usr/include/sys/wait.h \ - /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/signal.h /usr/include/i386/signal.h \ - /usr/include/i386/_structs.h /usr/include/sys/_structs.h \ - /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \ - /usr/include/sys/resource.h /usr/include/machine/endian.h \ - /usr/include/i386/endian.h /usr/include/sys/_endian.h \ - /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h \ - /usr/include/stdio.h ecotype.h ../libecoPCR/ecoPCR.h apat.h libstki.h \ - debug.h diff --git a/src/libecoprimer/libstki.P b/src/libecoprimer/libstki.P deleted file mode 100644 index 3b125ef..0000000 --- a/src/libecoprimer/libstki.P +++ /dev/null @@ -1,17 +0,0 @@ -libstki.o libstki.P : libstki.c /usr/include/stdio.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/sys/cdefs.h \ - /usr/include/machine/_types.h /usr/include/i386/_types.h \ - /usr/include/stdlib.h /usr/include/available.h /usr/include/sys/wait.h \ - /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/signal.h /usr/include/i386/signal.h \ - /usr/include/i386/_structs.h /usr/include/sys/_structs.h \ - /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \ - /usr/include/sys/resource.h /usr/include/machine/endian.h \ - /usr/include/i386/endian.h /usr/include/sys/_endian.h \ - /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h \ - /usr/include/string.h libstki.h ecotype.h ecoprimer.h \ - /usr/include/inttypes.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - ../libecoPCR/ecoPCR.h apat.h debug.h diff --git a/src/libecoprimer/merge.P b/src/libecoprimer/merge.P deleted file mode 100644 index fdb5796..0000000 --- a/src/libecoprimer/merge.P +++ /dev/null @@ -1,17 +0,0 @@ -merge.o merge.P : merge.c ecoprimer.h /usr/include/inttypes.h \ - /usr/include/sys/cdefs.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/machine/_types.h \ - /usr/include/i386/_types.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/stdlib.h /usr/include/available.h /usr/include/sys/wait.h \ - /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/signal.h /usr/include/i386/signal.h \ - /usr/include/i386/_structs.h /usr/include/sys/_structs.h \ - /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \ - /usr/include/sys/resource.h /usr/include/machine/endian.h \ - /usr/include/i386/endian.h /usr/include/sys/_endian.h \ - /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h \ - /usr/include/stdio.h ecotype.h ../libecoPCR/ecoPCR.h apat.h libstki.h \ - debug.h diff --git a/src/libecoprimer/pairs.P b/src/libecoprimer/pairs.P deleted file mode 100644 index 61a7976..0000000 --- a/src/libecoprimer/pairs.P +++ /dev/null @@ -1,17 +0,0 @@ -pairs.o pairs.P : pairs.c ecoprimer.h /usr/include/inttypes.h \ - /usr/include/sys/cdefs.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/machine/_types.h \ - /usr/include/i386/_types.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/stdlib.h /usr/include/available.h /usr/include/sys/wait.h \ - /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/signal.h /usr/include/i386/signal.h \ - /usr/include/i386/_structs.h /usr/include/sys/_structs.h \ - /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \ - /usr/include/sys/resource.h /usr/include/machine/endian.h \ - /usr/include/i386/endian.h /usr/include/sys/_endian.h \ - /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h \ - /usr/include/stdio.h ecotype.h ../libecoPCR/ecoPCR.h apat.h libstki.h \ - debug.h /usr/include/string.h diff --git a/src/libecoprimer/queue.P b/src/libecoprimer/queue.P deleted file mode 100644 index e7a6bc9..0000000 --- a/src/libecoprimer/queue.P +++ /dev/null @@ -1,17 +0,0 @@ -queue.o queue.P : queue.c ecoprimer.h /usr/include/inttypes.h \ - /usr/include/sys/cdefs.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/machine/_types.h \ - /usr/include/i386/_types.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/stdlib.h /usr/include/available.h /usr/include/sys/wait.h \ - /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/signal.h /usr/include/i386/signal.h \ - /usr/include/i386/_structs.h /usr/include/sys/_structs.h \ - /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \ - /usr/include/sys/resource.h /usr/include/machine/endian.h \ - /usr/include/i386/endian.h /usr/include/sys/_endian.h \ - /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h \ - /usr/include/stdio.h ecotype.h ../libecoPCR/ecoPCR.h apat.h libstki.h \ - debug.h diff --git a/src/libecoprimer/readdnadb.P b/src/libecoprimer/readdnadb.P deleted file mode 100644 index 9d16e11..0000000 --- a/src/libecoprimer/readdnadb.P +++ /dev/null @@ -1,17 +0,0 @@ -readdnadb.o readdnadb.P : readdnadb.c ecoprimer.h /usr/include/inttypes.h \ - /usr/include/sys/cdefs.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/machine/_types.h \ - /usr/include/i386/_types.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/stdlib.h /usr/include/available.h /usr/include/sys/wait.h \ - /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/signal.h /usr/include/i386/signal.h \ - /usr/include/i386/_structs.h /usr/include/sys/_structs.h \ - /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \ - /usr/include/sys/resource.h /usr/include/machine/endian.h \ - /usr/include/i386/endian.h /usr/include/sys/_endian.h \ - /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h \ - /usr/include/stdio.h ecotype.h ../libecoPCR/ecoPCR.h apat.h libstki.h \ - debug.h diff --git a/src/libecoprimer/smothsort.P b/src/libecoprimer/smothsort.P deleted file mode 100644 index 2441cad..0000000 --- a/src/libecoprimer/smothsort.P +++ /dev/null @@ -1,10 +0,0 @@ -smothsort.o smothsort.P : smothsort.c /usr/include/assert.h /usr/include/sys/cdefs.h \ - /usr/include/stdio.h /usr/include/_types.h /usr/include/sys/_types.h \ - /usr/include/machine/_types.h /usr/include/i386/_types.h \ - /usr/include/sys/types.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/types.h /usr/include/i386/types.h \ - /usr/include/machine/endian.h /usr/include/i386/endian.h \ - /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/sys/_structs.h \ - /usr/include/inttypes.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h diff --git a/src/libecoprimer/sortmatch.P b/src/libecoprimer/sortmatch.P deleted file mode 100644 index 721cd46..0000000 --- a/src/libecoprimer/sortmatch.P +++ /dev/null @@ -1,17 +0,0 @@ -sortmatch.o sortmatch.P : sortmatch.c ecoprimer.h /usr/include/inttypes.h \ - /usr/include/sys/cdefs.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/machine/_types.h \ - /usr/include/i386/_types.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/stdlib.h /usr/include/available.h /usr/include/sys/wait.h \ - /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/signal.h /usr/include/i386/signal.h \ - /usr/include/i386/_structs.h /usr/include/sys/_structs.h \ - /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \ - /usr/include/sys/resource.h /usr/include/machine/endian.h \ - /usr/include/i386/endian.h /usr/include/sys/_endian.h \ - /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h \ - /usr/include/stdio.h ecotype.h ../libecoPCR/ecoPCR.h apat.h libstki.h \ - debug.h /usr/include/math.h /usr/include/architecture/i386/math.h diff --git a/src/libecoprimer/sortword.P b/src/libecoprimer/sortword.P deleted file mode 100644 index 57df213..0000000 --- a/src/libecoprimer/sortword.P +++ /dev/null @@ -1,17 +0,0 @@ -sortword.o sortword.P : sortword.c ecoprimer.h /usr/include/inttypes.h \ - /usr/include/sys/cdefs.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/machine/_types.h \ - /usr/include/i386/_types.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/stdlib.h /usr/include/available.h /usr/include/sys/wait.h \ - /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/signal.h /usr/include/i386/signal.h \ - /usr/include/i386/_structs.h /usr/include/sys/_structs.h \ - /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \ - /usr/include/sys/resource.h /usr/include/machine/endian.h \ - /usr/include/i386/endian.h /usr/include/sys/_endian.h \ - /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h \ - /usr/include/stdio.h ecotype.h ../libecoPCR/ecoPCR.h apat.h libstki.h \ - debug.h /usr/include/math.h /usr/include/architecture/i386/math.h diff --git a/src/libecoprimer/strictprimers.P b/src/libecoprimer/strictprimers.P deleted file mode 100644 index cd887aa..0000000 --- a/src/libecoprimer/strictprimers.P +++ /dev/null @@ -1,18 +0,0 @@ -strictprimers.o strictprimers.P : strictprimers.c ecoprimer.h /usr/include/inttypes.h \ - /usr/include/sys/cdefs.h /usr/include/_types.h \ - /usr/include/sys/_types.h /usr/include/machine/_types.h \ - /usr/include/i386/_types.h \ - /usr/lib/gcc/i686-apple-darwin9/4.0.1/include/stdint.h \ - /usr/include/stdlib.h /usr/include/available.h /usr/include/sys/wait.h \ - /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \ - /usr/include/machine/signal.h /usr/include/i386/signal.h \ - /usr/include/i386/_structs.h /usr/include/sys/_structs.h \ - /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \ - /usr/include/sys/resource.h /usr/include/machine/endian.h \ - /usr/include/i386/endian.h /usr/include/sys/_endian.h \ - /usr/include/libkern/_OSByteOrder.h \ - /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \ - /usr/include/machine/types.h /usr/include/i386/types.h \ - /usr/include/stdio.h ecotype.h ../libecoPCR/ecoPCR.h apat.h libstki.h \ - debug.h /usr/include/string.h /usr/include/math.h \ - /usr/include/architecture/i386/math.h