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Change ecotag parser to conform to the new ecotag format

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This commit is contained in:
Eric Coissac
2009-07-21 18:26:12 +00:00
parent 2786acd295
commit 17c21ba875
1 changed files with 2 additions and 1 deletions
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3
src/obitools/ecotag/parser.py
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@ -38,7 +38,7 @@ class EcoTagFileIterator(utils.ColumnFile):
def __init__(self,stream): def __init__(self,stream):
utils.ColumnFile.__init__(self, utils.ColumnFile.__init__(self,
stream, '\t', True, stream, '\t', True,
(str,str, (str,str,str,
EcoTagFileIterator.value, EcoTagFileIterator.value,
EcoTagFileIterator.value, EcoTagFileIterator.value,
EcoTagFileIterator.value, EcoTagFileIterator.value,
@ -59,6 +59,7 @@ class EcoTagFileIterator(utils.ColumnFile):
_colname = ['identification', _colname = ['identification',
'seqid', 'seqid',
'best_match_ac',
'max_identity', 'max_identity',
'min_identity', 'min_identity',
'theorical_min_identity', 'theorical_min_identity',