Change ecotag parser to conform to the new ecotag format

2009-07-21 18:26:12 +00:00
parent 2786acd295
commit 17c21ba875
1 changed files with 2 additions and 1 deletions
--- a/src/obitools/ecotag/parser.py
+++ b/src/obitools/ecotag/parser.py
@ -38,7 +38,7 @@ class EcoTagFileIterator(utils.ColumnFile):
    def __init__(self,stream):
        utils.ColumnFile.__init__(self,
                                  stream, '\t', True, 
-                                  (str,str,
+                                  (str,str,str,
                                   EcoTagFileIterator.value,
                                   EcoTagFileIterator.value,
                                   EcoTagFileIterator.value,
@ -59,6 +59,7 @@ class EcoTagFileIterator(utils.ColumnFile):

    _colname = ['identification',
                'seqid',
+                'best_match_ac',
                'max_identity',
                'min_identity',
                'theorical_min_identity',