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Allow usage of iupac dna code in tagMatcher file reader

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This commit is contained in:
Eric Coissac
2008-09-04 15:38:51 +00:00
parent 3106f29954
commit 2665d987a2
1 changed files with 2 additions and 2 deletions
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4
src/obitools/tagmatcher/parser.py
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@ -6,9 +6,9 @@ from obitools.seqdb import nucEntryIterator
from obitools.location.feature import Feature
from obitools.location import locationGenerator
_seqMatcher = re.compile('(?<=TG )[acgtACGT]+')
_seqMatcher = re.compile('(?<=TG )[acgtrymkwsbdhvnACGTRYMKWSBDHVN]+')
_cdMatcher = re.compile('(?<=CD ) *([^:]+?) +: +([0-9]+)')
_loMatcher = re.compile('(?<=LO ) *([ACGT]+) +([^ ]+) +([^ ]+) +\(([0-9]+)\)')
_loMatcher = re.compile('(?<=LO ) *([ACGTRYMKWSBDHVN]+) +([^ ]+) +([^ ]+) +\(([0-9]+)\)')
_dmMatcher = re.compile('(?<=DM )[0-9]+')
_rmMatcher = re.compile('(?<=RM )[0-9]+')