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correcting little errors

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Céline Mercier
2011-11-25 16:44:22 +00:00
parent 55cdeb7564
commit 2eace42b84
2 changed files with 5 additions and 5 deletions
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6
src/obitools/barcodecoverage/drawBcTree.py
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@ -88,7 +88,7 @@ def cartoonRankGenerator(rank):
def collapseBcGenerator(Bclimit): def collapseBcGenerator(Bclimit):
def collapse(node): def collapse(node):
return 'Bc' in node and node['Bc']>=Bclimit return 'Bc' in node and node['Bc']<=Bclimit
return collapse return collapse
@ -103,6 +103,6 @@ def main(coverageTree) :
print nexusFormat(coverageTree, print nexusFormat(coverageTree,
label=label, label=label,
blocks=figtree, blocks=figtree,
cartoon=cartoonRankGenerator('family')) cartoon=cartoonRankGenerator('family'),
#collapse=collapseBcGenerator(50)) collapse=collapseBcGenerator(70))

4
src/obitools/barcodecoverage/writeBcTree.py
View File

@ -29,7 +29,7 @@ def main(BcValues,errors,tax) :
Bc = BcValues[taxon], Bc = BcValues[taxon],
forError = forErr, forError = forErr,
revError = revErr, revError = revErr,
totError = totErr, totError = totErr
) )
for taxon in BcValues: for taxon in BcValues:
@ -41,4 +41,4 @@ def main(BcValues,errors,tax) :
tree.addEdge(parent[0], taxon[0]) tree.addEdge(parent[0], taxon[0])
taxon=parent taxon=parent
return tree return tree