[MOD] Erreur de lecture des fichiers (standard, pas les options)

src/obitools/options/_options.pyx

@@ -92,6 +92,15 @@ def allEntryIterator(files,entryIterator,with_progress=False,histo_step=102):
             for line in sys.stdin:
                 yield line
         else:
+            import os, stat
+            
+            mode = os.fstat(0).st_mode
+            if stat.S_ISFIFO(mode):
+                pass
+            elif stat.S_ISREG(mode):
+                pass
+            else:
+                print>>sys.stderr, "No Entry to process"
+                sys.exit()
             for entry in entryIterator(sys.stdin):
                 yield entry
-            

src/obitools/utils/__init__.py

@@ -45,6 +45,7 @@ def universalOpen(file,*options):
     @return: an iterator on text lines.
     '''
     if isinstance(file,str):
+        try:
             if urllib2.urlparse.urlparse(file)[0]=='':
                 rep = open(file,*options)
             else:
@@ -58,6 +59,9 @@ def universalOpen(file,*options):
                 assert len(data)==1,'Only zipped file containning a single file can be open'
                 name = data[0].filename
                 rep = zip.open(name)
+        except Exception as e:
+            print 'Unexpected error: ', e
+            sys.exit();
     else:
         rep = file
     return rep