Add input and output options to solexaPairEnd
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@ -271,9 +271,6 @@ def autoEntriesIterator(options):
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options.outputFormater=formatFastq
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options.outputFormater=formatFastq
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options.outputFormat="fastq"
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options.outputFormat="fastq"
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# if options.addrank:
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# reader = withRankIterator(reader)
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if options.skiperror:
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if options.skiperror:
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reader = skipOnErrorIterator(reader)
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reader = skipOnErrorIterator(reader)
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