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figuring out a bug

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Céline Mercier
2013-09-04 10:11:10 +00:00
parent e3aaa53be1
commit 7e8835295a
1 changed files with 8 additions and 8 deletions
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16
src/obiaddtaxids.py
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@ -130,16 +130,16 @@ def UNITEIterator(f):
idSeq = fields[0][1:] idSeq = fields[0][1:]
seq = allSeq[1] seq = allSeq[1]
s = NucSequence(idSeq, seq) s = NucSequence(idSeq, seq)
if fields[1] != '-' : #if fields[1] != '-' :
s['ISDN_species_name'] = fields[1] s['ISDN_species_name'] = fields[1]
if fields[3] != '-' : #if fields[3] != '-' :
s['UNITE_species_name'] = fields[3] s['UNITE_species_name'] = fields[3]
path1 = fields[2].replace(';', ',') path1 = fields[2].replace(';', ',')
path2 = fields[4].replace(';', ',') path2 = fields[4].replace(';', ',')
if path1 != '-' : #if path1 != '-' :
s['ISDN_path'] = path1 s['ISDN_path'] = path1
if path2 != '-' : #if path2 != '-' :
s['UNITE_path'] = path2 s['UNITE_path'] = path2
yield s yield s