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Debuging read indexer

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Eric Coissac
2012-06-26 21:00:57 +00:00
parent 8e193d3206
commit a2ecbace5e
1 changed files with 3 additions and 3 deletions
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6
src/obitools/word/_readindex.pyx
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@ -543,11 +543,11 @@ cdef class ReadIndex:
start1=self._buffer+ i * self._seqsize start1=self._buffer+ i * self._seqsize
start2=start1 + self._seqsize / 2 start2=start1 + self._seqsize / 2
if (GET_SEQUSED(start1[0])==1 or GET_SEQUSED(start2[0])==1) \ if (GET_SEQUSED(start1[0])==1 or GET_SEQUSED(start2[0])==1) \
and not (GET_SEQUSED(start1[0])==1 or GET_SEQUSED(start2[0])==1): and not (GET_SEQUSED(start1[0])==1 and GET_SEQUSED(start2[0])==1):
if GET_SEQUSED(start1[0])==1: if GET_SEQUSED(start1[0])==1:
yield self.getSeqPairAt(start1,False) yield self.getSeqAt(start1,False)
else: else:
yield self.getSeqPairAt(start2,False) yield self.getSeqAt(start2,False)
def iterreads(self,bytes word): def iterreads(self,bytes word):
cdef obinuc nword[1024] cdef obinuc nword[1024]