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test a new obitools script for organelle assembling

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This commit is contained in:
Eric Coissac
2012-06-25 14:25:58 +00:00
parent 1f4485d443
commit cc299de019
1 changed files with 4 additions and 1 deletions
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5
src/extractreads.py
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@ -140,12 +140,15 @@ if __name__ == '__main__':
writer = sequenceWriterGenerator(options) writer = sequenceWriterGenerator(options)
print >>sys.stderr,"Indexing sequences..."
for seq in sequences: for seq in sequences:
indexer.add(seq) indexer.add(seq)
print >>sys.stderr,"Indexing words..."
indexer.indexWords(options.length) indexer.indexWords(options.length)
print >>sys.stderr,"Selecting sequences..."
while len(wordlist)>0: while len(wordlist)>0:
w = wordlist.pop() w = wordlist.pop()
worddone.add(w) worddone.add(w)