test a new obitools script for organelle assembling

src/extractreads.py

@@ -140,12 +140,15 @@ if __name__ == '__main__':
     
     writer = sequenceWriterGenerator(options)
 
-    
+    print >>sys.stderr,"Indexing sequences..."
     for seq in sequences:
         indexer.add(seq)
         
+        
+    print >>sys.stderr,"Indexing words..."
     indexer.indexWords(options.length)
     
+    print >>sys.stderr,"Selecting sequences..."
     while len(wordlist)>0:
         w = wordlist.pop()
         worddone.add(w)