Add input output map

doc/inout.dot

@@ -0,0 +1,120 @@
+digraph inout {
+
+   Node [shape="oval"];
+
+   
+   subgraph cluster_fasta {
+ 
+   fasta      [label="fasta\nsequence file",rank=1]
+   fastanuc   [label="nucleic fasta",rank=2];
+   fasta454   [label="nucleic fasta\n454 sequencer",rank=3];
+   fastataxid [label="nucleic fasta\nwith taxid tag",rank=3];
+   fastapep   [label="peptidic fasta",rank=2];
+ 
+ 
+   graph [rankdir=LR]
+   fasta454 -> fastanuc
+   fastataxid -> fastanuc
+   fastapep -> fasta
+   fastanuc -> fasta
+   }
+   
+   ecopcrout  [label="ecoPCR\nresult file"]
+   ecopcrdb   [label="ecoPCR\ndatabase"]
+   
+   ecotagout  [label="ecoTag.py\nresult file"]
+   ecotagabsfile [label="ecoTag.py\nabstract file"]
+   
+   specificityrepport [label="taxonomy\nspecificity report"]
+   taxstatrepport     [label="taxonomy\nstatistic report"]
+   
+   rdataframe  [label="R data frame\ntabular file"]
+   
+   node [shape="rectangle"];
+   edge [arrowhead=open];
+
+   ecopcr2fasta [label="ecopcr2fasta.py"]
+   
+   ecopcrout         -> ecopcr2fasta    [color=red]
+   ecopcr2fasta      -> fastanuc        [color=green]
+
+   ecotag       [label="ecoTag.py"]
+   
+   fastanuc          -> ecotag          [color=red]
+   ecopcrdb          -> ecotag          [color=pink,style=dotted,label="taxonomy"]
+   fastataxid        -> ecotag          [color=pink,style=dotted,label="reference"]
+   ecotag            -> ecotagout       [color=green]
+   
+   ecotagabstract  [label="ecoTagAbstract.py"]
+   
+   ecotagout         -> ecotagabstract  [color=red]
+   ecopcrdb          -> ecotagabstract  [color=pink,style=dotted,label="taxonomy"]
+   ecotagabstract    -> ecotagabsfile   [color=green]
+   
+   ecotagmargeabstract [label="ecoTagMergeAbstract.py"]
+   
+   ecotagabsfile     -> ecotagmargeabstract [color=red]
+   ecotagabsfile     -> ecotagmargeabstract [color=red]
+   ecotagabsfile     -> ecotagmargeabstract [color=red]
+   ecotagmargeabstract -> rdataframe        [color=green]
+   
+   
+   ecotaxspecificity [label="ecoTaxSpecificity.py"]
+   
+   ecopcrout         -> ecotaxspecificity  [color=red]
+   ecopcrdb          -> ecotaxspecificity  [decorate,color=pink,style=dashed,label="taxonomy"]
+   ecotaxspecificity -> specificityrepport [color=green]
+   
+   ecotaxstat [label="ecoTaxStat.py"]
+   
+   ecopcrout         -> ecotaxstat         [color=red]
+   ecopcrdb          -> ecotaxstat         [color=pink,style=dotted,label="taxonomy"]
+   ecotaxstat        -> taxstatrepport     [color=green]
+   
+   
+   fasta454filter [label="fasta454Filter.py"]
+   
+   fasta454          -> fasta454filter     [color=red]
+   fasta454filter    -> fastanuc           [color=green]
+   
+
+   fastacomplement [label="fastaComplement.py"]
+   
+   fastanuc          -> fastacomplement [color=red]
+   fastacomplement   -> fastanuc        [color=green]
+   
+   fastacut [label="fastaCut.py"]
+   
+   fasta             -> fastacut        [color=red]
+   fastacut          -> fasta           [color=green]
+   
+   fastaedittag  [label="fastaEditTag.py"]
+   
+   fasta             -> fastaedittag    [color=red]
+   fastaedittag      -> fasta           [color=green]
+   
+   fastagrep  [label="fastaGrep.py"]
+   
+   fasta             -> fastagrep       [color=red]
+   fastagrep         -> fasta           [color=green]
+   
+   fastalength  [label="fastaLength.py"]
+   
+   fasta               -> fastalength   [color=red]
+   fastalength         -> fasta         [color=green]
+   
+   fastasplit  [label="fastaSplit.py"]
+   
+   fasta               -> fastasplit    [color=red]
+   fastasplit          -> fasta         [color=green]
+   fastasplit          -> fasta         [color=green]
+   fastasplit          -> fasta         [color=green]
+
+   fastauniq  [label="fastaUniq.py"]
+   
+   fasta               -> fastauniq     [color=red]
+   fastauniq           -> fasta         [color=green]
+   
+ 
+
+}