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add categories attribute to determine uniqueness

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Eric Coissac
2011-06-16 20:42:38 +00:00
parent 253b76c3d3
commit ea05affb10
1 changed files with 1 additions and 1 deletions
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2
src/obitools/utils/bioseq.py
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@ -51,7 +51,7 @@ def uniqSequence(seqIterator,taxonomy=None,mergedKey=None,mergeIds=False,categor
mergedKey.add('taxid') mergedKey.add('taxid')
for seq in seqIterator: for seq in seqIterator:
s = tuple(seq[x] for x in categories) + (str(seq)) s = tuple(seq[x] for x in categories) + (str(seq),)
if s in uniques: if s in uniques:
s = uniques[s] s = uniques[s]
if 'count' in seq: if 'count' in seq: