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68d84a3795
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2012-03-28 13:49:02 +00:00 |
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62c5268702
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first version of the ngssim script
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2012-03-28 09:47:47 +00:00 |
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7f6c1ccf7a
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introduced patch from sumatra
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2012-03-27 09:11:50 +00:00 |
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dc3e78e586
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2012-03-27 08:44:52 +00:00 |
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81479249a1
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2012-03-27 08:42:17 +00:00 |
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63bf2cfe1a
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2012-03-26 14:35:52 +00:00 |
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a8be7b2f5c
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Add a special case if aligment does not work and alilength==0
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2012-03-07 11:06:56 +00:00 |
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efad784aeb
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bug patch
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2012-03-07 09:21:45 +00:00 |
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e201fb1355
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tag a new version
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2012-03-01 10:22:16 +00:00 |
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5dc7f39fa5
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Edited the doc
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2012-02-27 08:09:40 +00:00 |
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dc55ec421a
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alignment for profiles
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2012-02-08 13:02:57 +00:00 |
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bc573f3f39
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committing the profiles files
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2012-02-08 13:02:04 +00:00 |
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19285da85f
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two bug patches
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2012-02-02 17:10:56 +00:00 |
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f854e73318
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CodonNWS aligner : first commit
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2012-02-01 10:13:06 +00:00 |
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a1f16f43b3
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Edited the doc
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2012-02-01 10:09:36 +00:00 |
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2872552374
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fini de rire
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2012-01-13 14:28:16 +00:00 |
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c93e17d131
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juste pour rire
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2012-01-13 14:27:12 +00:00 |
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12a5adac05
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set progdoc=__doc__ in the getOptionManager call
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2012-01-06 17:03:51 +00:00 |
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537e951efe
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Edited the doc
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2011-12-08 15:12:09 +00:00 |
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dcda77f7b5
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2011-12-01 11:31:49 +00:00 |
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86547c55d1
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fixed some problems with the errors in BcTree.
Now, if error number > ecoPCR threshold, value = -1.
However the tree is still not really easy to read (regarding the errors).
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2011-12-01 11:20:47 +00:00 |
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cf134421c8
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fixed the tree problem (bc = 0.0 and not 0 when no coverage)
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2011-11-28 11:39:04 +00:00 |
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dcce84cd63
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rounded Bc and error values
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2011-11-26 14:42:48 +00:00 |
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acadf345a7
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added the average number of errors for each group
(but tree settings still not working)
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2011-11-26 14:03:33 +00:00 |
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d77635e188
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2011-11-25 16:46:52 +00:00 |
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fcd01b64e2
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2011-11-25 16:45:33 +00:00 |
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2eace42b84
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correcting little errors
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2011-11-25 16:44:22 +00:00 |
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55cdeb7564
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adding the package for computing Bc and drawing the tree
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2011-11-25 16:32:23 +00:00 |
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ea2504e601
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2011-11-25 14:47:48 +00:00 |
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0c02b642d9
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2011-11-25 14:47:17 +00:00 |
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69a7c2c9a4
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Edited the doc
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2011-11-24 14:35:33 +00:00 |
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3374a79c75
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Edited the obicomplement and obiselect doc
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2011-11-24 08:48:20 +00:00 |
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e951ca7fcd
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Edited the obiannotate doc
<TODO> Complete doc in the sphinx section (scripts/obiannotate.rst)
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2011-11-17 10:58:05 +00:00 |
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4c022a4a21
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patch getRoots bug
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2011-11-17 10:41:02 +00:00 |
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fded1e57da
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Set fastaUniq as a DEPRECATED script (and remove it from trunk)
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2011-11-16 12:58:57 +00:00 |
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0c45a72de5
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add progdoc argument
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2011-11-16 12:50:51 +00:00 |
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15a16459fa
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2011-11-16 12:46:46 +00:00 |
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5cbcc4d281
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Doc edition
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2011-11-16 12:34:54 +00:00 |
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d138b38dd3
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2011-11-16 12:32:10 +00:00 |
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74e9746e70
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Add an option in relation with obigraph
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2011-11-12 07:14:15 +00:00 |
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5b87b80059
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new version of ecoTags according to the change in obitools.align.lenlcs function api changes
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2011-11-12 07:12:07 +00:00 |
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edc0e17882
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optimize the len function of BioSequence
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2011-11-12 07:11:02 +00:00 |
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02e67dfd83
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Optimize the progress bar
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2011-11-12 07:10:21 +00:00 |
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3f9da85e6d
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new module to analyze properties of metabarcoding primers
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2011-11-12 07:09:32 +00:00 |
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67266c5510
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Doc edition + some small patches on graph api
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2011-11-12 07:05:47 +00:00 |
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bc4366dabb
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Doc edition
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2011-11-12 07:03:30 +00:00 |
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ff3420b5a1
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2011-11-12 07:00:38 +00:00 |
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60c64fd2ef
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2011-11-12 07:00:19 +00:00 |
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f5f5ba8182
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add in operator on taxonomy
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2011-11-12 06:58:54 +00:00 |
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9741276a94
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compute the length of the alignment corresponding to the LCS. this allows
accurate computation of distances from LCS where mismatches and indels count
for 1 unit of distance each.
|
2011-11-12 06:56:19 +00:00 |
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